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Journal of Bacteriology, March 2004, p . 1398-1408, Vol . 186,
No . 5
Relevance of Peptide Uptake Systems to the Physiology and Virulence of
Streptococcus agalactiae
Ulrike Samen,1 Birgit Gottschalk,1 Bernhard J .
Eikmanns,1 and Dieter J . Reinscheid1*
Department of Microbiology and Biotechnology, University of Ulm, D-89069 Ulm,
Germany1
Received 12 September 2003/ Accepted 21 November 2003
Streptococcus agalactiae is a major cause of invasive infections
in human newborns . To satisfy its growth requirements, S . agalactiae
takes up 9 of the 20 proteinogenic amino acids from the environment.
Defined S . agalactiae mutants in one or several of four putative
peptide permease systems were constructed and tested for peptide
uptake, growth in various media, and expression of virulence
traits . Oligopeptide uptake by S . agalactiae was shown to be
mediated by the ABC transporter OppA1-F, which possesses two
substrate-binding proteins [OppA1 and OppA2] with overlapping
substrate specificities . Dipeptides were found to be taken upin
parallel by the oligopeptide permease OppA1-F, by the dipeptideABC
transporter DppA-E, and by the dipeptide symporter DpsA.Reverse
transcription-PCR analysis revealed a polycistronicorganization of
the genes oppA1-F and dppA-E and a monocistronic
organization of dpsA in S . agalactiae . The results of
quantitativereal-time PCR revealed a medium-dependent expression of
theoperons dppA-E and oppA1-F in S .
agalactiae . Growth of S . agalactiaein human amniotic
fluid was shown to require an intact dpsAgene, indicating an
important role of DpsA during the infectionof the amniotic cavity by
S . agalactiae . Deletion of the oppBgene reduced the
adherence of S . agalactiae to epithelial cellsby 26%,
impaired its adherence to fibrinogen and fibronectinby 42 and 33%,
respectively, and caused a 35% reduction in expressionof the fbsA
gene, which encodes a fibrinogen-binding proteinin S . agalactiae .
These data indicate that the oligopeptidepermease is involved in
modulating virulence traits and virulencegene expression in S .
agalactiae.
Streptococcus agalactiae has a limited capacity to synthesize
amino acids and must acquire from the environment 9 of the 20
proteinogenic amino acids for growth [38] . The amino acid
requirementsof S . agalactiae can be satisfied by the uptake
of peptides,which are cleaved in the cytoplasm to their respective
aminoacids [69, 70] . In
microorganisms, two different peptide uptakesystems have been
described [23, 41] . The most common
peptidetransporters are binding-protein-dependent permeases,
consistingof multiple components, belonging to the ATP-binding
cassette[ABC] transporter superfamily [24] . The
process of peptide transportby ABC transporters involves the
extracytoplasmic binding ofthe substrate by a substrate-binding
protein, transfer of thesubstrate to two membrane-integrated
permeases for translocationacross the cytoplasmic membrane, and ATP
hydrolysis by one ortwo proteins located on the cytoplasmic side of
the membrane[24] . In numerous bacteria, the
uptake of di- and oligopeptidesis mediated by these ABC transporters
[41] . In contrast, somemicroorganisms take up di-
and/or tripeptides by single proteinswith similarity to eukaryotic
peptide transport proteins ofthe PRT family [62] .
These bacterial permeases use the protonmotive force across the
cytoplasmic membrane for the uptakeof peptides [23,
37] . They exhibit a broad substrate specificity,
but size recognition is restricted to di- and tripeptides only[16] .
Examples of this kind of peptide symporter are the tripeptide
permeases from Escherichia coli and Salmonella enterica serovar
Typhimurium [17, 60], and the di-
and tripeptide permeases [DtpT]of Lactococcus lactis and
Lactobacillus helveticus [23, 37].
In L . lactis, whose peptide uptake systems have been the focus
of intense research, di- and oligopeptides are taken up by two
distinct ABC transporters, termed DppA-E and OppA-F, respectively[52,
64] . Di- and tripeptide uptake is also mediated in L .
lactisby the proton-driven permease DtpT [23] .
In contrast, in Streptococcuspyogenes, dipeptides are taken
up exclusively by the ABC transportersystem DppA-E [44].
In addition to nutrient uptake, peptide permeases of several
organisms are involved in sensing pertinent environmental signalsin
the form of peptides, culminating in diverse responses suchas
sporulation [51], chemotaxis [1,
32], conjugation [29], development
of competence [4, 5, 26],
or expression of virulence determinants[11,
34, 44, 45] .
Signature-tagged mutagenesis identified theputative dipeptide ABC
transporter DppA-E as a requirement forgrowth and survival of S .
agalactiae in a rat sepsis model [28],
suggesting an important role of peptides as nutrients or signaling
molecules for the virulence of these bacteria.
S . agalactiae is the predominant cause of septicemia, pneumonia,
and meningitis in neonates and poses a significant threat to
parturient women [8, 54] . A common cause of
neonatal infectionis the colonization of the human rectovaginal
tract with S.agalactiae, ascending spread of the bacteria
into the amnioticfluid, and aspiration of contaminated amniotic
fluid by theinfant [8] . Although amniotic fluid
contains only low amountsof free amino acids [35],
it supports growth of S . agalactiaeto high concentrations [14,
66], indicating that S . agalactiae
satisfies its amino acid requirements in amniotic fluid by theuptake
of peptides.
Recently, the genome sequences of the two S . agalactiae strains
NEM316 and 2603 V/R were published, thereby allowing a genome-wide
search for putative peptide permease genes in S . agalactiae.
The present report describes the characterization of four putative
peptide permeases in S . agalactiae . Defined mutants in the putative
peptide uptake systems were constructed and used to define the
role of these permeases in the uptake of di- and oligopeptidesand in
the growth of S . agalactiae in various complex media.The
transcriptional organization of the peptide permease geneswas
analyzed in S . agalactiae, and additionally, the expressionof
these genes was determined during growth in various media.Finally,
we addressed the importance of the peptide permeasesin the binding
of S . agalactiae to host proteins, in the attachmentto
eukaryotic cells, and in the expression of a virulence genein S .
agalactiae.
Bacterial strains, eukaryotic cells, and growth conditions. The
S . agalactiae strain O90R [ATCC 12386] is a capsule mutantof
the serotype Ia clinical isolate O90 . Strain O90R was usedfor the
construction of insertion and deletion mutants in genesencoding
putative peptide transporters in S . agalactiae . S.agalactiae
strains belonging to the serotypes Ia, Ib, II, III,IV, and V,
respectively, are clinical isolates that were describedpreviously [53].
S . agalactiae was generally grown in Todd-Hewittbroth
supplemented with 1% yeast extract [THY] . RecombinantS .
agalactiae strains were selected in the presence of erythromycin
[5 µg/ml] . Growth experiments with S . agalactiae were
performed in THY, in fetal calf serum [FCS], and in amnioticfluid .
Amniotic fluid was obtained by amniocentesis from a patientsuffering
from polyhydramnios, and was kindly provided by thechildren's
hospital in Ulm, Germany . Growth of S . agalactiaein THY or
FCS was monitored by determining the optical densityof the culture
at 600 nm [OD600] . Due to the turbid nature ofamniotic
fluid, growth of S . agalactiae in this medium was determined
by measuring the viable cell counts of the culture . In additionto
growth in complex media, S . agalactiae was also grown in
chemically defined medium [CDM] [65] . Depleted CDM [dCDM] was
prepared without the essential amino acid isoleucine but containing
isoleucine-containing di-, tri-, and oligopeptides at a final
concentration of 0.1 mg ml-1 . The isoleucine-carrying peptides
were purchased from Bachem [Bubendorf, Switzerland] . The amino
acid requirements of different S . agalactiae strains were tested
with dCDM lacking, in each case, 1 of the 20 proteinogenic amino
acids . Amino acids in the growth medium were detected as their
o-phthaldialdehyde derivatives via high-pressure liquid chromatography
as described elsewhere [68].
E . coli DH5
was grown in Luria-Bertani medium, and pG+host6-or pTCV-lac-carrying
clones were selected with ampicillin [100µg/ml] or kanamycin [50
µg/ml].
The cell line A549 [ATCC CCL-185] was obtained from the American
Type Culture Collection . A549 is a human lung carcinoma cellline
which has many characteristics of type I alveolar pneumocytes.A549
cells were propagated in RPMI tissue culture medium [GibcoBRL]
supplemented with 10% FCS . Tissue cultures were incubatedin a humid
atmosphere at 37°C with 5% CO2.
Construction of insertion and deletion mutants in S . agalactiae.
Primers used for the construction of insertion or deletion mutantsof
S . agalactiae O90R are listed in Table 1 . Insertional
inactivationof genes in S . agalactiae O90R was performed as
described previously[48] . Briefly, an internal
fragment of the target gene was amplifiedby PCR and cloned into the
thermosensitive plasmid pG+host6.The resulting plasmid
was transformed into S . agalactiae accordingto the method
described by Ricci et al . [49], and transformants
were selected on erythromycin agar at 30°C . Cells carryingthe
plasmid within the chromosome were selected at 37°Cunder
erythromycin pressure as described previously [31] . The
locations of the plasmid insertions were confirmed by Southern
blot hybridization . The disruption of the oppA2 gene in S . agalactiae
was confirmed by ClaI digestion of genomic DNA of the parental
strains and of putative oppA2 integration mutants . Insertional
inactivation of the gbs1577 gene was tested with HpaI-digested
chromosomal DNA of the parental strains and of putative gbs1577
integration mutants . Digoxigenin-labeled probes of the genes
oppA2 and gbs1577 were obtained with the primers
5'-GGATTGGAATGGTTCAAATGGand 5'-AGAGTCCGAATCAGCTGTG and with the
oligonucleotides 5'-TTGAAGAGTCTAAAGGTGGand 5'-ACTTATTCCCTGCGAACTC,
respectively . Integration mutantswere constructed in the S .
agalactiae O90R wild type and inS . agalactiae mutants
that already carried deletions in thegenes oppA1, oppB,
dppB, and/or dpsA . The genes dppA, dppB,
oppA1, oppB, and/or dpsA were deleted from S . agalactiae
accordingto a procedure described by Schubert et al . [53] .
In brief,two DNA fragments flanking the target gene were amplified
byPCR with the primers listed in Table 1 . Due to
21 bases of cDNAin the two primer sets used for the amplification,
the resultingPCR products possessed a stretch of 21 identical base
pairs.This sequence identity was subsequently used to combine the
two PCR products in a crossover PCR . The resultant PCR product
consisted of a single DNA fragment that carried the flankingregions
of the target gene . The crossover PCR product was clonedinto the
plasmid pG+host6, and the construct was used to transform
S . agalactiae with subsequent erythromycin selection at 30°C.
Cells in which the plasmid had integrated into the chromosomewere
selected at 37°C under erythromycin pressure . Six suchintegrant
strains were serially passaged for 6 days in liquidmedium at 30°C
without erythromycin selection to facilitatethe excision of the pG+host6
construct, leaving the desiredtarget gene deletion in the
chromosome . Dilutions of the seriallypassaged cultures were plated
onto agar, and single colonieswere tested for erythromycin
sensitivity to identify pG+host6excisants . Successful
deletion of the genes oppA1, oppB, dppA,and/or
dppB was confirmed by Southern blotting with EcoRI-digested
chromosomal DNA of the S . agalactiae parental strains and of
the putative deletion mutants . A digoxigenin-labeled probe for
the detection of deletions in oppA1 and/or oppB was obtained
by PCR with the primers 5'-GTATCTTGATAACAGACG and 5'-GAATACCTACGATGATGCGC.
Deletions in the genes dppA and/or dppB were detected with a
digoxigenin-labeled probe that had been obtained by PCR with
the primers 5'-GTGATACACCGCTACTTC and 5'-CCTTGAGCACCTTTCCCAAC.The
successful deletion of the dpsA gene was confirmed by Southern
blot analysis with XbaI-digested chromosomal DNA from S . agalactiae
and a digoxigenin-labeled probe obtained by PCR with the primers
5'-AACTTTTTGACTGCGTGAC and 5'-TAGGTGCTTTGACCGAGATG . Deletion
mutants that had been confirmed by Southern blot analysis were
subsequently used for the construction of double and triplemutants
in genes encoding other putative peptide transporters.
| TABLE 1 . Primers used for targeted deletion or disruption of S .
agalactiae genes encoding putative peptide uptake systems
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RNA preparation, RT-PCR, and LightCycler real-time PCR. S .
agalactiae O90R was grown to mid-log phase in 50 ml of THY,CDM,
dCDM plus dipeptide [Ile-Val], or dCDM plus oligopeptide
[Val-Tyr-Ile-His-Pro-Phe] . Total RNA was prepared from the bacterial
culture with the RNeasy midi extraction kit [Qiagen] and treatedfor
1 h with 150 U of RNase-free DNase [Promega] . RNA sampleswere
checked for DNA contamination by PCR without prior reverse
transcription [RT] . As no amplicons were obtained, DNA contamination
during RNA preparation could be excluded . The transcriptional
organization of the genes dppA-E, oppA1-F, and
dpsA in S . agalactiaewas elucidated by RT-PCR analysis
with the primers listed inTable 2 by using 1-µg
RNA samples prepared from THY-grownculture.
| TABLE 2 . Primers used for RT-PCR and for quantitiative real-time PCR to
analyze transcriptional organization and expression of genes dppA-E,
oppA1-F, and dpsA in S . agalactiae
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Quantitative real-time PCR experiments were performed afterRT of RNA
with random hexanucleotides and the RevertAid first-strandcDNA
synthesis kit [MBI Fermentas] according to the instructionsof the
manufacturer . Expression analysis of the genes dppA,dppB,
dppE, oppA1, oppB, oppF, and dpsA,
respectively, was performedwith the primers listed in Table
2 in a LightCycler as describedpreviously [21] .
The quantity of cDNA for the investigated geneswas normalized to the
quantity of gyrA cDNA in each sample.Each experiment was
performed at least four times with two independentRNA preparations.
Construction of the fbsA-lacZ transcriptional fusion
plasmid pTfbsA. Plasmid pTCV-lac [46]
was used for expression analysis of thefbsA gene in S .
agalactiae . A DNA fragment of 747 bp containingthe fbsA
promoter [unpublished data] was amplified by PCR fromthe genome of
S . agalactiae with the primers 5'-CCGGAATTCAACTATTGCTCCCCTGC
and 5'-GCCGGATCCTTTCCTGATTTCCAAGTTC . The EcoRI and BamHI
sitesused for cloning are underlined . After digestion of the PCR
product and of plasmid pTCV-lac with EcoRI and BamHI,
the fbsApromoter region was ligated into pTCV-lac,
resulting in plasmidpTfbsA . The plasmids pTCV-lac and
pTfbsA were subsequently transformedinto S . agalactiae
by electroporation [49], and recombinantclones
were obtained by erythromycin selection.
Binding of fluorescein isothiocyanate-labeled group B streptococci to
immobilized human proteins. Terasaki microtiter plates were coated with
the human proteinsfibrinogen, fibronectin, and haptoglobin,
respectively, andthe binding of fluorescein isothiocyanate-labeled
S . agalactiaeto the immobilized fibrinogen was measured as
described previously[21] . Results were measured
in triplicate, and each assay wasrepeated at least four times.
Adherence and internalization assays. Adherence of S .
agalactiae to A549 epithelial cells and internalizationinto this
cell line were assayed as described previously [21].
Briefly, A549 cells were transferred to 24-well tissue culture
plates at approximately 4 x 105
cells per well and cultivatedovernight in RPMI tissue culture medium
supplemented with 10%FCS . After replacement of the medium with 1 ml
of fresh medium,the cells were infected with S . agalactiae at
a multiplicityof infection of 10:1 and incubated at 37°C for 2 h .
Theinfected cells were subsequently washed three times with
phosphate-bufferedsaline . The number of cell-adherent bacteria was
determinedby lysis of the eukaryotic cells with distilled water and
subsequentdetermination of CFU by plating appropriate dilutions of
thelysates on THY agar . Intracellular bacteria were determined
after a further incubation of the infected cells for 2 h with
RPMI medium containing penicillin G [10 U] and streptomycin[0.01 mg]
to kill extracellular bacteria . After three washeswith
phosphate-buffered saline, the epithelial cells were lysedwith
distilled water and the amount of intracellular bacteriawas
quantitated by plating serial dilutions of the lysate ontoTHY agar
plates . All samples were tested in triplicate, andexperiments were
repeated at least three times.
Determination of ß-galactosidase activity. Recombinant S .
agalactiae strains harboring the plasmid pTCV-lacor pTfbsA
were grown aerobically in THY broth at 37°C withshaking [100 rpm] .
At different time points, 1-ml samples werewithdrawn to determine
the OD600 and ß-galactosidaseactivity of the culture .
Prior to measuring ß-galactosidaseactivity [36],
cells were permeabilized with a 0.5% toluene-4.5%ethanol mixture as
described previously [46] . Enzymatic activityis
expressed in Miller units, which were calculated as follows:[103
x OD420]/[time of the reaction
[in minutes] x OD600
x dilutionof the cells in the
assay].
Nucleotide sequence accession number. The genomic DNA
sequence of S . agalactiae NEM316 can be accessedin the EMBL
database under accession number
AL732656 . In theSwissProt TREMBL database, the polypeptides
described in thisreport possess the following accession numbers: DppA,
Q8E7H0;
DppB,
Q8E7G9; DppC,
Q8E7G8; DppD,
Q8E7G7; DppE,
Q8G7G6;
OppA1,
Q8E7L0;
OppA2,
Q8E5L7; OppB,
Q8E7K9; OppC,
Q8E7K8; OppD,
Q8E7K7;
OppF,
Q8E7K6; DpsA,
Q8E489.
The genome of S . agalactiae possesses several putative peptide
permease genes. The annotated genome sequence of the S . agalactiae
strains NEM316[http://genolist.pasteur.fr/SagaList/index.html] and 2603 V/R [http://www.pnas.org/cgi/data/182380799/DC1/1]
indicated the presence of three ABC transporters and one proton-driven
symporter that are possibly involved in the import of peptides
into the cell . In the genome of S . agalactiae NEM316, the putative
ABC peptide transporters are encoded by the genes gbs0144 to
gbs0148, gbs0184 to gbs0188, and gbs1573 to
gbs1577 . Accordingto the functional analysis of these genes [see
below], the S.agalactiae genes gbs0144 to gbs0148
were termed oppA1-F andthe genes gbs0184 to
gbs0188 were named dppA-E [Fig . 1] . As
the S . agalactiae genome carries two oppA homologs [63],
onecarried by gbs0144 and the other carried by gbs0966,
the twogenes were termed oppA1 and oppA2,
respectively . The putativefunction of each of the gene products of
the ABC transporterswas inferred based on homology to functionally
characterizedABC transporters [24] . Thus, the
proteins DppA, OppA1, OppA2,and Gbs1577 represent putative
substrate-binding proteins, thepolypeptides DppB,C, OppB,C, and
Gbs1575,1576 represent hydrophobicintegral membrane proteins, and
DppD,E, OppD,F, and Gbs1573,1574represent putative ATPases that
couple ATP hydrolysis to substratetransport across the membrane.
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FIG . 1 . Restriction maps of genomic regions in S . agalactiae
encoding putative peptide permeases . According to the functional
analysis of these regions, the genes dppA to dppE were
shown to encode a dipeptide permease, the genes oppA1 to oppF
code for di- and oligopeptide permeases, the dpsA gene encodes a
dipeptide symporter, and the oppA2 gene represents a homolog of
the oppA1 gene . The gene designations of the other open reading
frames were adapted from the genome sequence of S . agalactiae
NEM316 . The arrow labeled "start rDNA" indicates the start of a
ribosomal DNA operon in S . agalactiae . T indicates
transcriptional terminators, as identified by RT-PCR analysis.
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The genome of S . agalactiae also contains a gene, gbs1513, whose
derived polypeptide sequence reveals 49% identity to the di-
and tripeptide permease DtpT from L . lactis [23] .
Functionalanalysis of gbs1513 in S . agalactiae
indicated that it encodesa dipeptide symporter [see below], and
therefore, gbs1513 wastermed dpsA.
Amino acid auxotrophies of S . agalactiae isolates.
Studying peptide uptake in S . agalactiae requires knowledge
regarding amino acid auxotrophies of the strains in use . Ina 1943
report, S . agalactiae strains were shown to be auxotrophicfor
the amino acids valine, leucine, isoleucine, phenylalanine,glutamic
acid, arginine, lysine, histidine, and tryptophan [38].
We tested 12 different S . agalactiae strains, belonging to six
different serotypes, for growth in CDM lacking, in each case,
one of the 20 proteinogenic amino acids . All of the S . agalactiae
isolates investigated, including strain O90R, were auxotrophic
for the amino acids valine, leucine, isoleucine, phenylalanine,
tyrosine, arginine, lysine, histidine, and tryptophan . The tested
S . agalactiae isolates therefore differ from the previously
described strains [38] in that they require tyrosine but not
glutamic acid for growth . Analysis of metabolic pathways that
can be predicted from the genome sequence [http://www.genome.ad.jp/kegg/metabolism.html]
of the S . agalactiae strains NEM316 and 2603 R/V confirmed for
these strains the amino auxotrophies identified by the growth
experiments . Peptide uptake was further investigated in S . agalactiae
strain O90R by making use of its isoleucine auxotrophy.
Identification of the oligopeptide uptake system in S . agalactiae.
Oligopeptide import in S . agalactiae was studied by deleting
the genes oppA1 and oppB and by insertionally inactivating the
oppA2 gene in the genome of S . agalactiae O90R, resulting in
the mutant strains
oppA1
oppB
and oppA2-int, respectively . Furthermore,a double mutant of
the genes oppA1 and oppA2 was constructedand named
oppA1
oppA2-int . In THY complex medium, S . agalactiaeO90R and
its isogenic mutants revealed identical growth ratesand final ODs
[data not shown], suggesting that the genes oppA1,oppA2,
and oppB are dispensable for growth in this medium . Therole
of these genes for the uptake of peptides was studied bygrowing
strain O90R and its isogenic mutants in various formulationsof CDM .
All strains grew in complete CDM [Fig . 2] and, as determined
by monitoring the OD of the cultures during growth, showed approximately
identical growth rates and final ODs [data not shown] . WhenCDM
was depleted of the essential amino acid isoleucine [dCDM],there was
no apparent growth of the strains [Fig . 2], confirming
the isoleucine auxotrophy of S . agalactiae O90R . Addition of
the isoleucine-containing dipeptide Ile-Val to dCDM restored
growth of all the strains tested [Fig . 2], suggesting that the
isoleucine auxotrophy can be supplemented by an isoleucine-containing
dipeptide . This finding also indicates that the genes oppA1,
oppA2, and oppB are not essential for the uptake of
dipeptides.Also demonstrated in Fig . 2, S .
agalactiae O90R revealed growthin dCDM with
isoleucine-containing tri-, tetra-, and hexapeptides.However, no
growth of the mutant
oppB
was observed in thesemedia [Fig . 2 and Table
3], indicating an essential functionof oppB
for the uptake of oligopeptides by S . agalactiae . Interestingly,
the mutant strain
oppA1
and oppA2-int exhibited growth in dCDMwith different tri-,
tetra-, and hexapeptides while the doublemutant
oppA1
oppA2-int did not grow on isoleucine-containingoligopeptides
[Fig . 2] . These data suggest that the substrate-binding
proteins OppA1 and OppA2 are both involved in oligopeptide uptake
and that they can substitute for each other functionally.
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FIG . 2 . Growth of the S . agalactiae wild-type strain O90R and of
different oligopeptide permease mutants in CDM or dCDM lacking the amino
acid isoleucine . dCDM was supplemented with different
isoleucine-containing peptides whose sequences are depicted in single
letter code . Growth of the different strains was visually inspected.
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| TABLE 3 . Growth characteristics of different S . agalactiae
strains in complete CDM or dCDMa lacking the amino
acid isoleucine
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Identification of dipeptide import systems in S . agalactiae.
Dipeptide uptake was studied by deleting the genes dppA, dppB,
and dpsA and insertionally disrupting the gene gbs1577 in
thechromosome of S . agalactiae O90R, resulting in the mutant
strains
dppA,
dppB,
dpsA,
and gbs1577-int . In THY complex medium, themutants revealed
no difference in growth rate and final OD comparedto S .
agalactiae O90R [data not shown] . All of the mutants,however,
exhibited growth in dCDM that contained isoleucine-carrying
dipeptides [Table 3], indicating that the import of dipeptides
in S . agalactiae is mediated by different uptake systems with
overlapping substrate specificities . This hypothesis was tested
by constructing S . agalactiae double and triple mutants with
different combinations of defects in the genes dppB, oppB,
gbs1577,and dpsA . All double mutants revealed growth in
dCDM with isoleucine-containingdipeptides [Table 3],
suggesting that more than two uptake systemsare involved in the
import of dipeptides in S . agalactiae . Finally,a triple
mutant with deletions in the genes dppB, oppB, and
dpsA did not grow in dCDM with the isoleucine-carrying dipeptides
Ile-Val, Ile-Glu, and Ile-Pro, respectively . This finding showsthat
dipeptide uptake is mediated by the oligopeptide permeaseOppA1-F,
the dipeptide permease DppA-E, and the dipeptide symporterDpsA .
Additionally, it shows that any of these permeases issufficient for
growth of S . agalactiae with dipeptides as anamino acid
source . Our data also indicate that the putativeABC transporter
genes gbs1573 to gbs1577 are not required fordipeptide
import . However, the triple mutant
dppB
oppB
dpsA
was still capable of growth on the dipeptide Ile-Phe, suggesting
the presence of at least one more dipeptide uptake system in
S . agalactiae . High-pressure liquid chromatography analysis
did not detect free isoleucine during growth of S . agalactiae
in Ile-Phe-containing dCDM [data not shown], indicating thatthis
dipeptide is not externally hydrolyzed by S . agalactiae.
Transcriptional organization and expression control of dppA-E,
oppA1-F, and dpsA. The transcriptional
organization of the genes dppA-E, oppA1-F,
and dpsA was investigated by RT-PCR with total RNA from S .
agalactiaeO90R . As shown in Fig . 3A, RT-PCR
amplified the regions dppAto dppC and dppB to
dppE from S . agalactiae RNA, suggestingthat the genes
dppA-E comprise an operon . No amplification products
were obtained with primer pairs specific to the genes gbs0183
to dppA and dppD to gbs0189, indicating transcriptional
initiationupstream of dppA and transcriptional termination
downstreamof dppE, respectively . Similarly, RT-PCR amplified
the regionsoppA1 to oppB, oppB to oppC,
and oppC to oppF from O90R RNA[Fig . 3A],
suggesting transcriptional coupling of the genesoppA1-F .
Here again, no amplification products were obtainedwith primer pairs
specific to the genes gbs0143 to oppA1 andoppD
to rDNA, indicating a promoter in front of oppA1 and a
transcriptional terminator downstream of oppF . Analysis of the
transcriptional organization of dpsA by RT-PCR revealed a dpsA-specific
amplicon with dpsA-specific primers [Fig . 3A] . No
amplificationproducts were obtained by RT-PCR with primers specific
to theregions gbs1512 to dpsA and dpsA to
gbs1514, indicating a monocistronicorganization of the dpsA
gene in S . agalactiae . All of the primerpairs used for RT-PCR
analysis amplified products of the expectedsize from chromosomal
S . agalactiae DNA [Fig . 3B] . As no PCRproduct
was amplified from total S . agalactiae RNA [data notshown],
DNA contaminations in the RNA preparation could be excluded.
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FIG . 3 . Transcriptional organization of the genes dppA-E,
oppA1-F, and dpsA in S . agalactiae . The gene names on
top indicate the genes to which the primer pairs annealed during RT-PCR
with total RNA [A] or during PCR with chromosomal DNA [B] from S .
agalactiae O90R.
|
|
In several organisms, transcriptional attenuation behind dppA
or oppA results in an increased amount of dppA- or oppA-specific
mRNA compared to the polycistronic mRNA [2,
10, 44] . Therefore,
quantitative real-time PCR was performed in a LightCycler to
determine the ratio of expression between dppA and the downstream
genes, dppB and dppE, and between oppA1 and the
downstream genes,oppB and oppF . The impact of medium
components on the expressionof dppA, dppB, dppE,
oppA1, oppB, oppF, and dpsA was also studied
by quantitative real-time PCR . Expression analysis was performed
with total RNA from S . agalactiae O90R after growth in THY,
CDM, or dCDM supplemented with the dipeptide Ile-Val or the
oligopeptide Val-Tyr-Ile-His-Pro-Phe . Under different growth
conditions, the expression of the dppA gene was similar to that
of dppE and even weaker than that of dppB [Fig.
4A] . Similarly,the amount of oppA1 mRNA
was, under different growth conditions,nearly identical to the
amount of transcript from the genesoppB and oppF [Fig.
4B] . These findings suggest that in theoperons
dppA-E and oppA1-F in S . agalactiae,
transcriptionalattenuation does not take place behind the genes
dppA and oppA1.
|
FIG . 4 . Expression analysis of the genes dppA, dppB,
dppE, and dpsA [A] and of oppA1, oppB, and
oppF [B] during growth of S . agalactiae O90R in THY complex
medium, CDM, or dCDM containing the dipeptide Ile-Val or the hexapeptide
Val-Tyr-Ile-His-Pro-Phe . The amount of mRNA of the different genes was
measured by quantitative real-time PCR in a LightCycler and normalized
to the expression of the gyrA gene . The expression of the
different genes is presented as the transcript copy number per 1.7
x 106 copies of gyrA
transcript . The dotted line indicates distinct transcription of the
genes dppA, dppB, dppE, and dpsA . Note the
different scales for the transcript copy number in panels A and B.
|
|
As depicted in Fig . 4, the expression of the oppA1-F
operonsignificantly exceeded the expression of the dppA-E
operon andthat of the dpsA gene [note the different scale of
the transcriptcopy number between the graphs], indicating that the
oligopeptidepermease might be required in higher amounts by the
cell . Growthof S . agalactiae under different culture
conditions revealeda moderately increased transcription of the genes
dppA, dppB,and dppE in THY complex medium . In
contrast, expression of thedpsA gene remained constant under
the growth conditions tested[Fig . 4A] .
Interestingly, the transcription of the genes oppA1,oppB,
and oppE was about fivefold induced in dCDM containingthe
hexapeptide Val-Tyr-Ile-His-Pro-Phe [Fig . 4B] . However,
growth of S . agalactiae in dipeptide-containing dCDM had no
effect on the expression of either of the peptide permease-encoding
genes . These findings indicate complex regulatory mechanisms
that control the expression of peptide permease-encoding genesin
S . agalactiae.
The dpsA gene plays an important role during growth in
amniotic fluid. S . agalactiae is known to infect the placenta
and grow in amnioticfluid to high cell densities [15,
50, 66] . The importance of
peptide uptake for growth of S . agalactiae in amniotic fluid
was studied with the strain O90R and the triple mutant
dppB
oppB
dpsA .
As shown in Fig . 5, the mutant
dppB
oppB
dpsA
grewto significantly lower cell numbers in amniotic fluid than S.
agalactiae O90R, suggesting an important role of dipeptide and/or
oligopeptide uptake during growth of S . agalactiae in amniotic
fluid . To investigate this effect in more detail, growth in
amniotic fluid was monitored for the S . agalactiae single mutants
dppB,
oppB,
and
dpsA
[Fig . 5] . Interestingly, the mutant
dpsA
revealed the same growth defect in amniotic fluid as observed
for the triple mutant
dppB
oppB
dpsA,
suggesting that the dpsAdeficiency caused the growth
impairment in amniotic fluid . Thedifferent peptide permease mutants
and strain O90R were alsotested for growth in various complex media .
However, the testedstrains did not reveal differences in growth
rates and finalODs in either THY or FCS [data not shown] . These
findings suggestthat S . agalactiae specifically requires the
dipeptide permeaseDpsA to successfully proliferate in human amniotic
fluid.
|
FIG . 5 . Growth of S . agalactiae O90R and isogenic peptide
permease mutants in human amniotic fluid . The growth of the strains was
monitored by plating serial dilutions onto THY agar plates and counting
the CFU.
|
|
The oligopeptide permease is important for the binding of S .
agalactiae to host proteins. In Streptococcus gordonii and
Streptococcus pneumoniae, therespective oligopeptide
permeases control the interaction ofthe bacteria with host proteins
[11, 27, 34] .
Therefore, theimportance of the three peptide uptake systems for the
bindingof S . agalactiae to different host proteins was
investigated.S . agalactiae strain O90R revealed significant
binding to immobilizedfibrinogen, fibronectin, and haptoglobin
[Table 4] . However,the fibrinogen binding of the
S . agalactiae mutants
oppB
and
dppB
oppB
dpsA
was reduced by 42% . Similarly, both mutants revealeda 33% reduction
in binding to human fibronectin . None of thetested mutants was
impaired in its interaction with human haptoglobin.These findings
indicate that the oligopeptide permease in S.agalactiae plays
a role in the binding of the bacteria to humanfibrinogen and
fibronectin.
| TABLE 4 . Binding of S . agalactiae O90R and isogenic peptide
permease mutants to immobilized fibrinogen, fibronectin, and haptoglobina
|
|
The influence of peptide permeases on the bacterial adherence to and
invasion of eukaryotic cells. In S . pneumoniae, the oligopeptide
permease was shown to berequired for efficient adherence of the
bacteria to human cells[11] . The S . agalactiae
wild-type strain O90R and the peptidepermease mutants
dppB,
oppB,
dppB
dpsA,
and
dppB
oppB
dpsA
weretherefore tested for their ability to adhere to and invade cells
of the human lung epithelial cell line A549 . Among the tested
strains, the mutants
oppB
and
dppB
oppB
dpsA
revealed a 26%reduced adherence to host cells . However, none of the
mutantsexhibited altered invasion into host cells [data not shown],
indicating that a deficiency in the oligopeptide permease only
moderately reduces adherence of S . agalactiae to human cells.
The oligopeptide permease controls expression of the fbsA
gene. In S . agalactiae, the FbsA protein represents the major
fibrinogen-bindingprotein [53], which also plays
an important role in the adherenceof the bacteria to host cells
[unpublished data] . As the previousresult demonstrated an influence
of the oligopeptide permeaseon fibrinogen binding and adherence of
S . agalactiae to humancells, the expression of the fbsA
gene was analyzed in S . agalactiaeO90R and its isogenic
mutant
oppB .
Both strains were transformedwith the vector pTCV-lac and
with the plasmid pTfbsA, whichcarries the fbsA
promoter in front of the promoterless lacZgene . In pTfbsA-carrying
strains, fbsA expression can be monitoredby measuring the
ß-galactosidase activity . Strainsthat harbored the vector pTCV-lac
did not possess ß-galactosidaseactivity during growth [data not
shown] . However, both pTfbsA-carryingstrains revealed a
growth-phase-dependent expression of fbsA,peaking in the
middle of the exponential growth phase with amoderate decline during
late logarithmic and stationary growth[Fig . 6] .
The obtained results are identical to the expressionanalysis of
fbsA in the S . agalactiae strain 6313-fbsA-luc [21],
which carries in its chromosome a promoterless luciferase gene
fused to the fbsA gene . This result indicates that plasmid-mediated
expression of fbsA does not influence its growth-phase-dependent
regulation . Growth experiments revealed identical growth ofthe
S . agalactiae strains O90R[pTfbsA] and
oppB[pTfbsA]
[Fig.6] . However, in strain
oppB[pTfbsA],
the fbsA expression wasapproximately 35% reduced compared to
the wild-type strain O90R[pTfbsA],indicating that the
oligopeptide permease stimulates the expressionof the fbsA
gene in S . agalactiae.
|
FIG . 6 . Growth and expression profiles of an fbsA-lacZ
transcriptional fusion in the S . agalactiae strains O90R and
oppB .
The bacteria were grown aerobically in THY liquid medium, and at various
time points, samples were withdrawn for the determination of
ß-galactosidase activity [A] and OD600 [B] of the culture .
ß-Galactosidase activity was expressed in Miller units.
|
|
S . agalactiae is a fastidious organism that requires 9 of the
20 proteinogenic amino acids for growth [reference 38 and the
present report] . To meet its amino acid requirements, S . agalactiae
takes up amino acids in their free or peptide-bound form . Peptides
are imported by the cell with the aid of specific peptide permeases
and are subsequently cleaved by intracellular peptidases to
their single amino acids [41] . Four putative peptide
permeaseswith homology to known peptide transport systems have been
notedin the genomes of the two sequenced S . agalactiae
strains [18,63] . However, none
of these putative peptide permeases had beentested for
functionality . In the present report, defined mutantsin the four
putative peptide permease systems were constructedand used to define
the roles of these uptake systems in theoverall process of peptide
utilization and the expression ofvirulence traits in S .
agalactiae.
Feeding experiments with defined S . agalactiae mutants demonstrated
that peptide uptake in these bacteria is mediated by two ABC
transporters and one putative proton-driven permease, as isalso the
case for L . lactis and E . coli [23,
41, 52, 60,
64].The ABC transporter Gbs1573-1577, however,
appears not to berequired for the uptake of peptides in S .
agalactiae . As Gbs1573-1577reveals similarity to peptide
transporters but also to Ni2+ permeases [18], it
is possibly involved in the uptake of Ni2+.Like other
microorganisms [41], S . agalactiae requires an ABC
transporter system [OppA1-F] for the import of oligopeptidesof
two to six residues . In the genome of S . agalactiae, two
oppA homologs, termed by us oppA1 and oppA2, have been noted.
The presence of two oppA genes readily explains the apparent
dispensability of either for the transport of oligopeptidesby
the oligopeptide permease system . Indeed, the two proteinsappear to
have overlapping specificities for oligopeptides,as only the
simultaneous inactivation of oppA1 and oppA2 abolished
transport of oligopeptides . The presence of several oligopeptide
binding proteins that serve the same membrane complex is rather
common in microorganisms . S . pneumoniae, S . gordonii, and E.
coli each possess three genes that encode oligopeptide binding
proteins [3, 26, 40] .
In Borrelia burgdorferi, five oppA homologshave been
identified [9] . Finally, Enterococcus faecalis produces
two peptide binding proteins with different affinities for the
peptide sex pheromone cCf10, which is required for conjugative
transfer of certain plasmids [29] . It has been suggested
that,as OppA1 and OppA2 from S . agalactiae are closely
related toeach other on the amino acid level, they presumably
evolvedfrom a common ancestor following gene duplication [63].
Dipeptide import by S . agalactiae appears to be a complex process,
involving the two ABC transporters DppA-E and OppA1-F and the
putative proton-driven symporter DpsA . DpsA and DppA-E homologsof
several microorganisms have been shown to transport bothdipeptides
and tripeptides [6, 22, 37,
41, 67] . The tripeptide
Val-Trp-Ile was not transported in oligopeptide permease mutantsof
S . agalactiae, demonstrating that the dipeptide permeases
DppA-E and DpsA are not involved in the transport of this tripeptide.
However, this finding does not rule out other tripeptides as
substrates for either of the two dipeptide permeases.
Unexpectedly, feeding experiments with S . agalactiae peptide
permease mutants demonstrated the uptake of the dipeptide Ile-Phe
even in the absence of functional DppA-E, OppA1-F, and DpsA
permeases . Cleavage of the dipeptide Ile-Phe by extracellular
peptidases is unlikely, as isoleucine was not detectable in
Ile-Phe-containing dCDM and other isoleucine-containing dipeptides
also were not cleaved by S . agalactiae . Our findings therefore
indicate the presence of a further dipeptide permease that mediates
the uptake of the dipeptide Ile-Phe in S . agalactiae . Interestingly,
L . lactis triple mutants in the two ABC peptide transporters
and the proton-driven peptide symporter also still grow on different
dipeptides [52] . The presence of four different
dipeptide permeasesis therefore discussed for L . lactis as
well.
The presence of different dipeptide uptake systems in S . agalactiae
indicates their involvement in the import of different typesof
dipeptides . However, the S . agalactiae mutants
dppB,
oppB,
and
dpsA
exhibited unaltered growth in dCDM with different isoleucine-containing
dipeptides, suggesting overlapping substrate specificities of
the three dipeptide uptake systems . In contrast, mutant
dpsA
was significantly impaired for growth in human amniotic fluid,
whereas the mutants
dppB
and
oppB
exhibited identical growthcompared to the parental strain O90R .
Amniotic fluid has a lowconcentration of free amino acids [55]
but contains significantamounts of proteins and peptides [47,
56] . It is therefore temptingto speculate that
during growth of S . agalactiae in human amnioticfluid, the
permease DpsA plays an essential role in the importof specific
dipeptides to satisfy the bacterial amino acid requirements.
Similarly, L . lactis also depends on the DpsA ortholog DtpT
for growth in a mixture of caseins [59] . A frequent cause of
S . agalactiae infection is aspiration of infected amniotic fluid
by the fetus . Amniotic fluid only has low titers of antibody
against S . agalactiae [20] and supports growth of
S . agalactiaeto high cell densities [14,
66] . As the present study demonstratesan
important role of DpsA for growth of S . agalactiae in amniotic
fluid, DpsA represents an interesting target for the preventionor
treatment of in utero S . agalactiae infections.
In several organisms, the expression of genes encoding peptide
permeases is induced by the presence of peptides [7,
25, 44]or repressed in the
absence of substrate [39, 57] . As shown
by quantitative real-time PCR, the transcription of the S . agalactiae
genes dppA to dppE was not affected in di- or
hexapeptide-containingdCDM . However, the expression of the dppA-E
operon increasedabout twofold during growth of the bacteria in THY
medium, whichis a complex mixture of free amino acids, dipeptides,
and oligopeptides.This indicates that components in THY medium,
putatively peptides,cause an induction of dppA-E gene
expression in S . agalactiae.In contrast, the expression of
the dppA gene in E . coli is repressedduring growth of
the bacteria in a peptide-rich complex medium[39] .
In S . pyogenes as well, the transcription of the dppA-E
operon is down-regulated during growth of the bacteria in THY
medium [44] . This suggests different regulatory mechanisms in
expression control of the dppA-E operon among these
microorganisms.As demonstrated by our studies, the expression of the
oppA1-Foperon was induced about eightfold in dCDM
containing the hexapeptideVal-Tyr-Ile-His-Pro-Phe . However, no
induction of oppA1-F expressionwas observed during
growth of S . agalactiae in THY complex medium,which also
contains dipeptides and free amino acids in additionto
oligopeptides . It can therefore be speculated that in S.
agalactiae the transcription of the oppA1-F operon is
repressedby the presence of free amino acids and/or dipeptides in
themedium . In L . lactis, the expression of the oppA
gene is alsosignificantly repressed during growth of the bacteria in
a complexmedium that is rich in free amino acids and peptides [13],
indicatinga similar transcription control of the oppA-F
operons in thesebacteria . In our studies, the expression of the
dpsA gene wasnot altered during growth of the bacteria in
different media,whereas in L . lactis, transcription of the
dpsA ortholog dtpTis regulated by the peptide content of
the medium [22] . Takentogether, our findings
suggest that the transcriptional regulationof genes encoding peptide
permeases in S . agalactiae is complexand partially distinct
from the regulatory mechanisms of peptidepermease-encoding genes in
other microorganisms.
In several gram-positive bacteria, peptide uptake systems arenot
only essential for nutrient accumulation but they are alsoinvolved
in determining other cellular functions, includingvirulence
mechanisms . In pneumococci and S . pyogenes, the oligopeptide
permease modulates the adherence of the bacteria to human hostcells
[11, 12] . As revealed by our studies, the
oligopeptidepermease from S . agalactiae also stimulates the
adherence ofthe bacteria to human epithelial cells and modulates
their bindingto fibrinogen and fibronectin . In addition, the
oligopeptidepermease was shown to control the expression of the
fbsA gene,which encodes a fibrinogen-binding adhesin . Similarly,
the oligopeptidepermease from S . gordonii modulates the
expression of the cshAgene, encoding a 259-kDa protein that
mediates the binding ofthe bacteria to immobilized fibronectin and
to other microorganisms[33, 34] .
In S . pyogenes, the oligopeptide and the dipeptidepermease
both control the transcription of the speB gene, encodinga
cysteine protease which is important for the virulence ofthe
bacteria [30, 44, 45] .
Furthermore, in Bacillus cereus andBacillus thuringiensis,
the oligopeptide permease controls theexpression of the plcR
regulon, which is essential for the virulenceof these bacteria [19,
58] . As demonstrated by these examples,
oligopeptide permeases are involved in the expression controlof
virulence genes in various organisms . At present, the molecularbasis
for the oligopeptide permease-dependent regulation offbsA
expression in S . agalactiae remains unknown . However, a
putative quorum-sensing system was recently identified in S.
agalactiae O90R [61] . Interestingly, the inactivation of
thisquorum-sensing system also changed the fibrinogen-binding
propertiesof the resultant mutant . As quorum sensing in
gram-positivebacteria is mediated by small peptides, it is tempting
to speculatethat in S . agalactiae the oligopeptide permease
is involvedin the quorum-sensing-dependent regulation of fbsA
expression.In fact, in several gram-positive bacteria, oligopeptide
permeasesare involved in quorum-sensing-dependent gene regulation
andcontrol cellular properties like sporulation in Bacillus
subtilis[43, 51],
development of competence in B . subtilis and S . pneumoniae
[5, 42], and conjugation in E .
faecalis [29] . All these studiespoint to an
involvement of peptide permeases in the transportof signaling
molecules that in turn modulate gene expressionby interacting with
transcriptional regulators . The precisemechanism of oligopeptide
permease-dependent gene regulationin S . agalactiae and the
full complement of molecules that participatein this signaling
process remain to be identified . Studies aretherefore under way to
unravel peptides with signaling functionin S . agalactiae and
to identify further genes revealing anoligopeptide
permease-dependent expression.
* Corresponding author . Mailing address: Dept . of Microbiology
and Biotechnology, University of Ulm, Albert-Einstein-Allee 11, D-89069 Ulm,
Germany . Phone: 49-731-5024853 . Fax: 49-731-5022719 . E-mail:
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