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Journal of Bacteriology, March 2004, p . 1430-1437, Vol . 186,
No . 5
TeiR, a
LuxR-Type Transcription Factor Required for Testosterone Degradation in
Comamonas testosteroni
José Luis Pruneda-Paz, Mauricio Linares, Julio E . Cabrera,
and Susana Genti-Raimondi*
Departamento de Bioquímica Clínica, Facultad de Ciencias Químicas,
Universidad Nacional de Córdoba, 5000 Córdoba, Argentina
Received 27 August 2003/ Accepted 17 November 2003
We have identified a new steroid-inducible gene [designatedteiR
[testosterone-inducible regulator]] in Comamonas testosteroni
that is required for testosterone degradation . Nucleotide sequence
analysis of teiR predicts a 391-amino-acid protein which shows
homology between residues 327 and 380 [C-terminal domain] tothe LuxR
helix-turn-helix DNA binding domain and between residues192 and 227
to the PAS sensor domain . This domain distributionresembles that
described for TraR, a specific transcriptionalregulator involved in
quorum sensing in Agrobacterium tumefaciens.Analysis of the
gene expression indicated that teiR is tightlycontrolled at
the transcriptional level by the presence of testosteronein the
culture medium . A teiR-disrupted mutant strain was completely
unable to use testosterone as the sole carbon and energy source.In
addition, the expression of several steroid-inducible geneswas
abolished in this mutant . Northern blot assays revealedthat teiR
is required for full expression of sip48-ß-HSDgene mRNA
[encoding a steroid-inducible protein of 48 kDa and
3ß-17ß-hydroxysteroid dehydrogenase] andalso of other steroid
degradation genes, including those encoding3 -hydroxysteroid
dehydrogenase,
5-3-ketoisomerase,
3-oxo-steroid
1-dehydrogenase,
and 3-oxo-steroid
4-[5 ]-dehydrogenase
enzymes.Moreover, when teiR was provided to the teiR-disrupted
strainin trans, the transcription level of these genes was
restored.These results indicate that TeiR positively regulates the
transcriptionof genes involved in the initial enzymatic steps of
steroiddegradation in C . testosteroni.
Steroids, phenylalkanoic acids, resin acids, and different polycyclic
aromatic hydrocarbons represent a group of molecules that are
widespread in the environment as breakdown products of ligninor
other plant-derived molecules [7, 22,
31] . These compounds[known collectively as
endocrine disruptors] interfere withthe normal endocrine system
physiology of vertebrates, particularlyin the mechanisms governing
reproductive development and function[10], and
constitute an important group of bioactive environmentalpollutants.
Comamonas testosteroni is a gram-negative bacterium able to
use steroids [as well as many other aromatic compounds] as asole
carbon source; it is an attractive model for the studyof the
mechanisms involved in the mineralization of these bioactive
compounds for their removal from the environment [3,
5, 6, 11,
19, 26, 30,
37, 38] . C . testosteroni
metabolizes certain steroidsthrough a complex metabolic pathway
involving many steps catalyzedby steroid-inducible enzymes [11,
26, 38, 42] .
Interestingly,recent works revealed that testosterone simultaneously
inducedboth steroid- and PAH-metabolizing enzymes in this bacterium
[29, 36] . For this reason, the study
of the mechanisms regulatingthe steroid-inducible gene transcription
is concerned with understandingboth catabolic pathways.
While the genes encoding some of the enzymes catalyzing the
oxidoreduction at different positions of the steroid nucleusand the
ring opening of the steroid molecule have been identified[1,
2, 8, 9, 12,
16, 18, 20,
21, 25, 29,
32, 36, 44,
45], onlylimited information is available about
the mechanisms governingsteroid-inducible gene expression . The
following items havebeen reported to date . Horinouchi et al . [20]
suggest that anintermediate compound produced in the course of
testosteronedegradation induces expression of tesB, encoding
a meta-cleavagesteroid-inducible enzyme . The induction of 3 -hydroxysteroid
dehydrogenase-carbonyl reductase [ -HSD],
in contrast, appearsto represent a derepression in which the
steroidal inducer preventsthe binding of two repressor proteins
[RepA and RepB] to the
-HSD
gene promoter and mRNA, respectively [44, 45].
For this study we report the identification and characterization
of the teiR gene, which is essential for testosterone degradation
in C . testosteroni . teiR encodes a LuxR-type transcription factor
required for the expression of several steroid-inducible genes,
suggesting that a quorum-sensing mechanism is involved in its
regulation.
Bacterial strains, plasmids, and culture conditions. Bacterial
strains and plasmids used in this study are listedin Table
1 . Escherichia coli was grown at 37°C in Luria-Bertani
[LB] medium [34] . C . testosteroni was grown at
30°C in LBmedium or in M9 minimal medium [34]
plus acetate [0.2% [wt/vol]]or testosterone [0.25 mg ml-1]
or both, as indicated in thetext . Overnight cultures were diluted
1/100 in fresh mediumand incubated for 2 h in LB medium or for 12 h
in M9 medium,and cells were washed, diluted 1/50 in fresh medium,
and incubatedas indicated for each experiment.
| TABLE 1 . Bacterial strains, plasmids, and cosmids used
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Growth of C . testosteroni was monitored by measuring optical
density at 600 nm [OD600] . Alternatively, growth in M9 medium
plus testosterone was monitored by counting colonies that appeared
on LB plates [on which appropriately diluted cultures have been
spread] after incubation at 30°C . When needed, antibioticswere added
at the following concentrations [in micrograms permilliliter]:
ampicillin [Ap], 100; chloramphenicol [Cm], 20;gentamicin [Gm], 10;
kanamycin [Km], 20; spectinomycin [Sp],600; and tetracycline [Tc],
10.
DNA manipulations and sequence determinations. Standard
protocols or manufacturers' instructions were followedfor DNA
isolation and recombinant DNA procedures [34] . DNA sequencing
was performed on double-stranded templates derived [using the
dideoxy chain termination method] [35] from pBIISKMut50 and
pBB20H . For TaqDNA polymerase-initiated cycle sequencing reactions
with fluorescently labeled dideoxynucleotide terminators [Applied
Biosystems Inc.], standard protocols of the manufacturer were
used . The sequencing reactions were analyzed using a model 377
automated DNA sequencer [Applied Biosystems Inc.] . Blast softwarewas
used to screen DNA and protein databases for similar proteins[4] .
Multiple sequence alignments were made with ClustalW software
[version 1.7] [40].
Construction of plasmids and allele replacement. Plasmid
pBIISKMut50 was constructed by the ligation of NotIDNA
fragments from C . testosteroni UT2.5Mut50 into pBIISK . After
transformation into E . coli DH5 ,
Tc-resistant [Tcr] strainswere isolated.
For the construction of pBB20H, a pVK102 C . testosteroni cosmid
library was screened using a 0.5-kb PstI/NotI fragment from
pBIISKMut50 as a probe [see Southern blot analysis results]and
a cosmid containing a teiR gene was isolated [pVK102teiR].
Finally, a 20-kb HindIII fragment from pVK102teiR
[containingteiR] was subcloned into the HindIII site
of pBBR1MCS2.
Plasmid pGteiR was constructed by PCR amplification of teiR
coding sequence with the primers teiR-Fw
[5'-ggaagcttgctagcATGTGCCCATATTTCGACAC-3']and teiR-Rv
[5'-cccggggctagcaagcttTCACTTGTTCCCCAGCCA-3'] . Theamplification
product was ligated into the pGEMT easy vector.
Plasmid pBteiR-3'UR
was constructed by insertion of a 2-kb SmaIfragment [obtained
from pHP45:: ]
[33] into the NdeI site locatedin the
teiR 3' untranslated region of pBIISKMut50 . The recombinant
plasmid was transferred [using the mobilizing plasmid pRK2013]into
C . testosteroni UT2.5 by triparental mating . Donor, helper,
and recipient cells were grown overnight in LB medium . Cell
suspensions [0.2 ml each] were mixed, filtered on a 0.4-µm-pore-size
nitrocellulose membrane filter, and incubated at 30°C onan LB agar
plate for 24 h . Cells were suspended in sterile 1%[wt/vol] NaCl and
plated onto LB agar containing Gm [10 µgml-1] and Sp [600
µg ml-1] to select transconjugants.Southern hybridization
was performed to confirm the genomicstructure of the mutant strain [C .
testosteroni UT2.5teiR-3'UR ].
ß-Galactosidase assays. The standard procedures described by
Miller [27] were used forquantitative
measurements of ß-galactosidase activity.Samples were collected
after 12 h [LB medium] or 17 h [M9 medium]of incubation . The values
given throughout this paper representthe averages of the results of
three independent experiments,each of which was conducted with
duplicate samples.
Southern blot analysis. Genomic DNAs were prepared
essentially as described by Sambrooket al . [34] .
Southern blot analysis was performed as describedpreviously [8] .
DNA fragments were transferred from agarosegels or from bacterial
colonies to nylon membranes after alkalidenaturation . A 650-bp
EcoRV-HindIII fragment from pSL9 [complementaryto the 3'
end of the gene encoding 3ß-17ß-hydroxysteroiddehydrogenase [ß-HSD]]
and a 540-bp PstI-NotI fragmentfrom pBIISKMut50
[complementary to the teiR 3' untranslatedregion] were
labeled with [ 32P]dATP
[3,000 Ci mmol-1] by a randompriming method [14]
and used as probes as indicated in the text.
Testosterone degradation. Testosterone degradation was
performed as described previously[18] . Briefly,
bacterial cells [grown in LB medium plus testosteroneduring 12 h of
culture] were harvested by centrifugation at4°C . Aliquots of culture
supernatants were extracted threetimes with 5 vol of ethyl ether and
submitted [using benzene-ethanol[95:5 {vol/vol}] as a solvent
system] to thin-layer chromatographyon silica gel GF254 plates . The
pattern of testosterone degradationwas visualized using 254-nm UV
light . Testosterone, 4-androstene-3,17-dione,and
1,4-androstadiene-3,17-dione were used as standards.
RNA isolation and Northern blot analysis. C . testosteroni
was grown in LB medium or M9 medium plus acetateduring the indicated
periods of culture growth in the absenceor presence of testosterone .
Total RNA was extracted as describedpreviously [8] .
RNA samples [20 µg per lane] were electrophoresedon a 1.2% [wt/vol]
agarose gel containing 18% [vol/vol] formaldehydeand transferred to
nitrocellulose membranes [8] . Equal levelsof
loading and transfer were assessed by methylene blue stainingof
membranes . Prehybridization and hybridization reactions were
performed as described previously [8] . A 600-bp HincII-PstI
restriction fragment from pSL9 [complementary to the sip48 gene],
a 650-bp EcoV-HindIII restriction fragment from pSL9
[complementaryto the ß-HSD gene], a 1,400-bp PstI restriction
fragmentfrom pAK1370 [complementary to the
-HSD
and
5-KSI
genes], a2,200-bp KpnI restriction fragment from pTEK21
[complementaryto the 3-oxo-steroid
1-dehydrogenase
[ 1-DH]
and 3-oxo-steroid
4-[5 ]-dehydrogenase
[ 4-DH]
genes], and a 1,200-bp EcoRI restrictionfragment from pGteiR
[complementary to teiR] were labeled with[ 32P]dATP
[3,000 Ci mmol-1] by a random priming method [14]
and used as probes as indicated in the text.
Genetic complementation of teiR mutant. The complete
coding sequence of teiR was obtained as a 1.2-kbEcoRI
fragment from pGteiR and then subcloned into the EcoRI
site of pBBR1MCS2 to generate pBBteiR . Plasmids pBBR1MCS2 [negative
control] and pBBteiR were mobilized [using the mobilizing plasmid
pRK2013] from E . coli to C . testosteroni UT2.5Mut50 by
triparentalmating . Donor, helper, and recipient cells were grown
overnightin LB medium . Cell suspensions [0.2 ml each] were mixed,
filteredon a 0.4-µm-pore-size nitrocellulose membrane filter,
and incubated on an LB agar plate for 8 h at 30°C . Cellswere
suspended in sterile 1% NaCl, and transformants were selectedon LB
agar plates containing Gm [10 µg ml-1] and Km [500µg ml-1].
Nucleotide sequence accession number. The nucleotide
sequences reported in this paper have been depositedin the GenBank
database under accession number
AY363220 . The3.1-kb HindIII fragment of pSL9 bearing
stdC, sip48, and theß-HSD gene has the following
accession number:
U41265.
Identification of a gene required for sip48-ß-HSDgene
steroid-inducible expression. Previously, we characterizedtwo
steroid-inducible genes encoding a protein of unknown function
[Sip48] and ß-HSD [which are transcribed as a polycistronicmessage] .
We localized the promoter activity responsible forsip48-ß-HSD
gene steroid-inducible transcription inthe sip48 5'
untranslated region [unpublished data] . A lacZtranscriptional
fusion containing the promoter region insertedinto the chromosome of
C . testosteroni [C . testosteroni UT2.5][Fig.
1] allowed us to measure promoter activity by quantifying
the ß-galactosidase activity produced by this strainin
different experimental conditions . High levels of ß-galactosidase
activity [3,000 to 4,000 Miller units] were found when C . testosteroni
UT2.5 was grown in presence of testosterone irrespective of
whether LB medium or M9 medium was used [Fig . 2] . In addition,
this strain showed the same growth rate as wild-type C . testosteroni
cells in LB medium and M9 minimal medium supplemented with acetate
or testosterone [data not shown].
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FIG . 1 . Restriction map of the 3.2-kb HindIII fragment cloned
into pSL9 plasmid . The regions carrying stdC and sip48 and
the ß-HSD gene are indicated by boxes . H, HindIII; Hc, HincII;
P, PstI; Ev, EcoRV . A schematic representation of pUT2.5
carrying the transcriptional fusion of the ß-HSD gene upstream region
[thick line] to a promoterless lacZ gene [open box] is shown . The
black box and arrow indicate the sip48-ß-HSD gene
steroid-inducible promoter.
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FIG . 2 . Activity of sip48-ß-HSD gene promoter in C .
testosteroni UT2.5 and UT2.5Mut50 strains . The levels of
ß-galactosidase activity of a sip48-ß-HSD gene promoter-lacZ
transcriptional fusion in C . testosteroni UT2.5 and UT2.5Mut50
strains growing in LB medium and M9 minimal medium supplemented with
acetate [M9] in the presence [black bars] and the absence [white bars]
of testosterone are shown . ß-Galactosidase activities were measured with
permeabilized cells as described in Materials and Methods . Each value is
the average of the results from three independent experiments [error
bars indicate standard deviations].
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To characterize genes involved in the regulation of sip48-ß-HSD
gene steroid-inducible expression, a mini-Tn5 insertional
mutagenesisprocedure was carried out by the transference of a Tc
minitransposonelement [pUTminiTn5] into C . testosteroni
UT2.5 . A number ofmutant strains that exhibited resistance to Tc
were isolated.Screening of the resulting transconjugants revealed
the presenceof white-colored colonies grown on induction medium
containingX-Gal [5-bromo-4-chloro-3-indolyl-ß-D-galactopyranoside]
and testosterone . One of these colonies [designated UT2.5Mut50]
was isolated and further characterized . The effect of the minitransposon
insertion on sip48-ß-HSD gene promoter activity inthis
mutant bacterium was confirmed by comparing the ß-galactosidase
activity produced by this strain to that produced by C . testosteroni
UT2.5 when the strains were grown in LB medium and M9 minimal
medium supplemented with acetate in the presence and the absenceof
testosterone [Fig . 2] . The results clearly demonstrate that
the testosterone-inducible expression of the reporter gene controlled
by the sip48-ß-HSD gene promoter is absent from the
C . testosteroni UT2.5Mut50 mutant strain . To assess whetherthe
ß-galactosidase levels determined for the UT2.5Mut50strain reflected
the transcriptional state of the correspondingsip48-ß-HSD
gene transcript, their mRNA levels wereanalyzed by Northern blot
analysis using sip48 and ß-HSDgene probes as described in
Materials and Methods . Strong signalswere revealed in the lanes
corresponding to mRNAs from C . testosteroniwild-type and
UT2.5 strains growing in the presence of testosterone.In contrast,
no sip48-ß-HSD gene transcript was observedwith mRNAs from
C . testosteroni UT2.5Mut50 grown under the sameexperimental
conditions [data not shown], thus confirming theresults obtained
with the ß-galactosidase reporterfusion.
Characterization of the identified gene. Chromosomal DNA of
the C . testosteroni UT2.5Mut50 strain wasisolated and
digested with a NotI enzyme, which does not cutwithin the
minitransposon . The digested mixture was ligatedinto the NotI
site of pBIISK plasmid, and transformants ableto grow on Tc were
selected . The resulting plasmid [pBIISKMut50]was found to contain a
2.5-kb insert [including the 1.8-kb Tcr fragment] . Complete analysis
of the 0.7-kb fragment sequencelocated downstream of the Tcr
gene revealed an incomplete openreading frame [3' end] . To obtain
the 5' coding sequence ofthe interrupted gene, a DNA pVK102 C .
testosteroni cosmid librarywas screened with a probe
complementary to the 3' end of thedisrupted gene . A positive-testing
clone was isolated and characterizedby Southern blot analysis . A
20-kb HindIII fragment was subclonedinto pBBR1MCS2 [pBB20H]
and partially sequenced, and the completesequence of the disrupted
open reading frame was obtained . Thededuced amino acid sequence of
this gene predicts a 391-amino-acidprotein with a molecular mass of
43 kDa . Computer analysis showedthat this amino acid sequence shows
high-level similarity [93.1%]between residues 327 and 380
[C-terminal domain] to that ofthe LuxR helix-turn-helix DNA binding
domain [smart00421] [Fig.3A] . In addition, the
sequence between residues 192 and 227shows mild similarity [53.7%]
to that of the PAS sensor domain[smart00091] [Fig . 3B] .
This novel gene [called teiR [testosterone-inducible
regulator]] encodes a protein with 28% identity [44% similarity]over
an aligned length of 384 amino acid residues with a putativeprotein
of Novosphingobium aromaticivorans [accession number
ZP 00092325.1] . Other related proteins are putative transcription
regulator proteins of Mesorhizobium loti [accession number
NP 103400.1],Bradyrhizobium japonicum [accession number
NP 770508.1],Ralstonia solanacearum [accession number
NP 523029.1], and aDNA-binding protein of Vibrio vulnificus
[accession number
NP 761512.1].A 60-amino-acid region in the C-terminal domain
[wherea potential helix-turn-helix DNA binding motif is located
alongwith several highly conserved amino acids such as those found
in CsgD [COG2771], GerE [pfam00196], and LuxR [smart00421] regulatory
proteins] is typically present in these proteins.
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FIG . 3 . [A] Alignment of the helix-turn-helix DNA binding domains of
three transcriptional regulators [CsgD [COG2771], LuxR [smart00421], and
GerE [pfam00196]] and amino acids 327 to 380 of the TeiR protein
[accession number
AY363220] . [B] Alignment of the PAS sensor domain [smart00091] and
amino acids 192 to 227 of the TeiR protein . For residues that were
identical in all the aligned proteins, the characters representing the
residues appear on a dark-gray background . For residues that were
identical in 60% of the aligned proteins, the characters representing
the residues appear on a light-gray background.
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teiR gene expression was investigated in C . testosteroni UT2.5
and UT2.5Mut50 strains growing on LB medium with or without
testosterone . Total RNA was extracted at different culture times
under each set of experimental conditions, and Northern blotassays
were performed . The teiR probe recognized strong signals
corresponding to a 1,150-nucleotide transcript when C . testosteroni
UT2.5 bacteria were grown in the presence of testosterone, indicating
that this is a steroid-inducible gene . In contrast, no teiR
expression was found when the UT2.5Mut50 RNA was probed, thus
indicating the absence of teiR expression in the UT2.5Mut50
strain [Fig . 4].
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FIG . 4 . Expression of teiR in C . testosteroni UT2.5 and
UT2.5Mut50 strains in response to the presence of testosterone . Total
RNA samples [20 µg per lane] were prepared from bacteria grown on LB
medium in the absence [LB] or presence [LB+T] of testosterone during 9,
12, and 24 h of culture growth . [A] The membrane was hybridized with a
DNA fragment complementary to the teiR gene . [B] The samples were
analyzed by electrophoresis on formaldehyde-agarose gels, transferred to
a nylon membrane, and stained with methylene blue.
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Expression analysis of other steroid-inducible genes in C .
testosteroni UT2.5Mut50. To establish whether the teiR gene
is required for the transcriptionof other steroid-inducible genes,
Northern blot assays wereperformed . Total RNAs from C .
testosteroni UT 2.5 and UT2.5Mut50strains grown on LB medium
with or without testosterone wereisolated . DNA fragment probes
complementary to the sequencesof the steroid-inducible genes
encoding
-HSD-KSI
and
1-DH- 4-DH
recognized the corresponding strong signals in the RNA samples
obtained from C . testosteroni UT 2.5 [the control strain] grown
in the presence of testosterone . In contrast, no steroid-inducible
gene expression was observed in C . testosteroni UT2.5Mut50 strain
[Fig . 5] . These results demonstrate that in addition to
sip48-ß-HSDgene transcription, the expression of other
testosterone-induciblegenes such as the
-HSD-KSI
and
1-DH- 4-DH
genes is impaired byteiR gene disruption.
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FIG . 5 . Expression of steroid-inducible genes in C . testosteroni
UT2.5 and UT2.5Mut50 strains . Total RNA samples [20 µg per lane] were
prepared from bacteria grown on LB medium in the presence or absence of
testosterone during 6, 9, 12, and 24 h of culture growth . [A and B] The
membrane was hybridized with a DNA fragment complementary to
-HSD
and
5-KSI
[ hsd/ksi]
[A] and to
1-DH
and
4-DH
[ 1dh/ 4-dh]
[B] steroid-inducible genes . [C] The samples were analyzed by
electrophoresis on formaldehyde-agarose gels, transferred to a nylon
membrane, and stained with methylene blue.
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Altered phenotypes in C . testosteroni UT2.5Mut50. Having
obtained evidence that teiR disruption abolishes notonly
sip48-ß-HSD gene testosterone-inducible expressionbut also the
transcription of other steroid-inducible genes,we analyzed the
growth of C . testosteroni UT2.5Mut50 in M9 minimalmedium
supplemented with testosterone as the sole carbon andenergy source .
The results [shown in Fig . 6] indicate that the
mutant strain is completely unable to use testosterone as thesole
carbon source . Moreover, measurement of testosterone degradationin
C . testosteroni UT2.5Mut50 indicates that this strain cannot
transform testosterone into androstenedione [data not shown].
Nevertheless, the mutant and wild-type strains showed identical
duplication times [70 min] when they were grown in LB mediumor M9
minimal medium supplemented with acetate [Fig . 6] . These
results demonstrate that teiR disruption abolishes testosterone
metabolism and [as a consequence] C . testosteroni growth in
medium containing this steroid as the sole carbon source.
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FIG . 6 . Growth of C . testosteroni UT2.5 [white shading] and
UT2.5Mut50 [grey shading] strains in LB medium [circle], M9 medium plus
acetate [square], and M9 medium plus testosterone [triangle] . Growth of
bacteria in LB medium or M9 plus acetate was monitored by measuring OD600 .
Growth of bacteria in M9 medium plus testosterone was monitored by
counting colonies [in CFU per milliliter] that appeared on LB plates [on
which appropriately diluted cultures have been spread] after incubation
at 30°C.
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Insertional transcription inactivation downstream of the teiR
coding sequence. To investigate whether the phenotype observed in the
C . testosteroniUT2.5Mut50 strain was due to a polar mutation
caused by teiRdisruption, we inserted a Sp cassette after the
coding sequenceof this gene . A new C . testosteroni UT2.5
mutant strain wasconstructed by insertion of the Sp interposon into
the NdeIrestriction site located 50 bp downstream of a
teiR stop codon.Southern blot analysis of the selected mutant
strain [C . testosteroniUT2.5teiR-3'UR ]
allowed us to confirm that the wild-type sequencewas completely
replaced by the interposon-disrupted construct[data not shown] . The
UT2.5teiR-3'UR
mutant strain grew on LBmedium or M9 minimal medium plus acetate at
the same growthrate [70 min] as C . testosteroni UT2.5 .
Moreover, the C . testosteroniUT2.5teiR-3'UR
strain was able to grow on M9 minimal mediumsupplemented with
testosterone as the sole carbon source [Fig.7A],
indicating that no genes required for growth on testosteroneare 3'
of teiR and cotranscribed with teiR . In addition, the
level of sip48-ß-HSD gene promoter activity [measuredas the
level of ß-galactosidase activity in C . testosteroni
UT2.5teiR-3'UR
grown in testosterone-containing medium] wasequal to that of the
control strain [UT2.5] [Fig . 7B] . Thus,no genes
required for testosterone-inducible gene expressionare located
downstream of teiR coding sequence and cotranscribedwith it.
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FIG . 7 . Growth and sip48-ß-HSD gene promoter activity in C .
testosteroni UT2.5, UT2.5Mut50, and UT2.5teiR-3'UR
strains and in the UT2.5Mut50 strain complemented with teiR . [A]
Growth of C . testosteroni UT2.5 [black circle], UT2.5teiR-3'UR
[black square], and UT2.5Mut50 [black triangle] strains and of the
UT2.5Mut50 strain complemented with pBBteiR [white triangle] .
Growth of bacteria in LB medium or M9 plus acetate was monitored by
measuring OD600 . Growth of bacteria in M9 minimal medium plus
testosterone was monitored by counting colonies [in CFU per milliliter]
that appeared on LB plates [on which appropriately diluted cultures have
been spread] after incubation at 30°C . [B] ß-Galactosidase activity
levels of sip48-ß-HSD gene promoter-lacZ transcriptional
fusion in C . testosteroni strains UT2.5, UT2.5Mut50, UT2.5teiR-3'UR ,
and UT2.5Mut50 complemented with pBBteiR [UT2.5Mut50 + pBBteiR]
growing in LB medium and in M9 minimal medium supplemented with acetate
[M9] in the presence [black bars] and the absence [white bars] of
testosterone . ß-Galactosidase activities were measured with
permeabilized cells as described in Materials and Methods . Each value is
the average of the results from three independent experiments [error
bars indicate standard deviations].
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Genetic complementation of teiR mutant. To demonstrate
that teiR encodes a protein involved in the testosterone-inducible
expression of sip48-ß-HSD genes and to confirm thatthis
gene is essential for growth on testosterone as the solecarbon
source, we performed a complementation assay . The aimof this
experiment was to analyze the expression of the reporterlacZ
fusion in C . testosteroni UT2.5Mut50 after trans-complementation
with teiR and to ascertain whether the complemented strain regains
the growing phenotype of the C . testosteroni UT2.5 parental
strain . The complementation procedure was performed with pBBteiR
plasmid containing the teiR gene . As expected, the
testosterone-induciblesip48-ß-HSD gene promoter activity was
restored inthe complemented UT2.5Mut50 strain . The ß-galactosidase
levels determined when the cells were growing in the presence
of testosterone were similar to those of the isogenic UT2.5strain
[Fig . 7B] . In addition, the complemented bacterium was
able to grow when testosterone was used as the sole carbon source
[Fig . 7A] . In both experiments, the behavior of a
complementedstrain carrying pBBR1MSC2 without an insert was
indistinguishablefrom that of C . testosteroni UT2.5Mut50
[data not shown] . Northernblot assays performed with the
complemented strain also demonstratedsteroid-inducible expression of
the sip48-ß-HSD gene,the
-HSD-KSI
gene, and the
1-DH- 4-DH
genes [data not shown].Altogether, these data confirm that teiR
is essential for thesteroid-inducible transcription of different
steroid-induciblegenes and for steroid metabolism in C .
testosteroni.
In this work, we report the identification and characterizationof
teiR, a novel steroid-inducible gene that is necessary for
testosterone degradation in C . testosteroni strains . The C-terminal
domain of TeiR has a high level of similarity to the LuxR DNA
binding domain [belonging to the family of LuxR-type transcription
regulators] . It has been established by genetic analyses thatLuxR is
composed of two functional modules or domains: an amino-terminal
domain with an autoinductor binding region and a carboxy-terminal
transcription regulatory domain [28] . LuxR-like proteins bind
autoinducers that have achieved a critical threshold concentration,
after which the LuxR-autoinducer complexes generally activate
gene transcription . Two interesting features among LuxR-type
transcriptional regulators are the high level of homology inthe DNA
binding domain and the variability in the sensor domain[17] .
In this regard, the TeiR C-terminal domain shows high-levelhomology
to the helix-turn-helix DNA binding motif present inLuxR and other
related transcriptional regulators . In additionto the LuxR
helix-turn-helix DNA binding domain [residues 327to 380], a PAS
sensor domain located between amino acids 192and 227 was observed .
This domain distribution resembles thatdescribed for different
LuxR-type proteins; it is particularlysimilar to that of TraR, a
specific transcriptional regulatorinvolved in quorum sensing in
Agrobacterium tumefaciens [whosethree-dimensional structure has
been recently described] [41].
It has been suggested that quorum sensing is an integral component
of gene regulatory networks in gram-negative bacteria [43].
Particularly, C . testosteroni teiR-disrupted strains are unable
to induce the expression of several steroid-inducible genes,
such as those encoding a steroid-inducible protein of 48 kDa,ß-HSD,
-HSD,
5-KSI,
1-DH,
and
4-DH
enzymes . The absenceof these proteins probably determines the
complete impairmentof the C . testosteroni teiR mutant strain
with respect to theuse of different steroid compounds as a sole
carbon and energysource . The results of the complementation assay
and the transcriptionalinterruption downstream of the teiR
coding sequence clearlydemonstrate the importance of this gene for
the observed phenotypes.Taken together, these results suggest that
TeiR is a globalregulator of the steroid catabolic pathway in C .
testosteroni.
One or more regulatory proteins often control the expressionof
bacterial catabolic pathways for aromatic compounds, andthe
effectors of these regulatory proteins are usually eitherthe initial
substrates or catabolic intermediates of the pathways[39] .
It has been reported in particular that the regulationof
-HSD
gene expression appears to be a derepression mechanismin which the
steroidal inducer [testosterone] prevents the bindingof two
repressor proteins [RepA and RepB] to the
-HSD
gene promoterand mRNA, respectively [45] . The
complete lack of activationof
-HSD
gene steroid-inducible transcription when the teiR-disrupted
mutant was grown in the presence of testosterone indicates thatthis
steroid is not the true inducer of this pathway, suggestingthat the
mechanisms regulating
-HSD
gene expression might bemore complex than previously reported . In
agreement with ourresults, the data obtained by Horinouchi et al . [20]
suggestthat expression of tesB [encoding a meta-cleavage
steroid-inducibleenzyme] in C . testosteroni TA441 is induced
by an intermediatecompound produced in the course of testosterone
degradation.
In conclusion, mutation of teiR is sufficient to block the ability
of C . testosteroni to use testosterone as a sole carbon source,
indicating that TeiR is an integral part of the degradation
portion of the steroid catabolic pathway . Furthermore, teiR
encoding a LuxR-type transcription factor is required for the
expression of several steroid-inducible genes, suggesting thata
quorum-sensing mechanism might be involved in its regulation.
We are grateful to Victor de Lorenzo for kindly providing pUTminiTn5
[Tcr], to Athan Kuliopolus for providing the pAK1370 plasmid
encoding the C-terminal sequences of the 3 -HSD
and
5--KSI
genes,and to Patrick Plessiat for providing the pTEK21 plasmid
encoding
1-DH
and the N end of
4-DH .
We are grateful to Luis Patrito,Alfredo Flury, and Graciela
Panzetta-Dutari for discussionsand critical reading of the
manuscript.
This work was supported by grants from the Consejo Nacionalde
Ciencia y Tecnología [CONICET] and the Secretaríade Ciencia y
Tecnología de Universidad Nacional de Córdoba[SECyT] . J.L.P.-P . was
supported by a fellowship from the SECyT.
* Corresponding author . Mailing address: Universidad Nacional
de Córdoba, Departamento de Bioquímica Clínica, Facultad de Ciencias Químicas,
Haya de la Torre y Medina Allende, 5000 Córdoba, Argentina . Phone: 54 351
4334164 . Fax: 54 351 4333048 . E-mail:
sgenti@fcq.unc.edu.ar .
Present address: Developmental Genetics Section, Laboratoryof
Molecular Biology, National Cancer Institute, National Institutesof
Health, Bethesda, MD 20892.
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