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Journal of Bacteriology, January 2004, p . 326-334, Vol . 186,
No . 2
Transcriptional Regulation of the Staphylococcus aureus Thioredoxin and
Thioredoxin Reductase Genes in Response to Oxygen and Disulfide Stress
Orit Uziel,
Ilya Borovok, Rachel Schreiber, Gerald Cohen, and Yair Aharonowitz*
Department of Molecular Microbiology and Biotechnology, George S . Wise
Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Israel
Received 21 July 2003/ Accepted 8 October 2003
In this report we describe the cloning, organization, and promoter
analysis of the Staphylococcus aureus thioredoxin (trxA) and
thioredoxin reductase (trxB) genes and their transcription in
response to changes in oxygen concentration and to oxidative
stress compounds . Northern analysis showed that the S . aureus trxA
and trxB genes were transcribed equally well in aerobic and
anaerobic conditions . Several oxidative stress compounds were found
to rapidly induce transcription of the trxA and trxB
genes . The most pronounced effects were seen with diamide, a
thiol-specific oxidant that promotes disulfide bond formation;
menadione, a redox cycling agent; and
-butyl
hydroperoxide, an organic peroxide . In each case the induction was
independent of the general stress sigma factor
B .
These studies show that the S . aureus trxA and trxB
genes are upregulated following exposure to these oxidative stress
agents, resulting in increased disulfide bond formation . In contrast,
no effect of hydrogen peroxide on induction of the trxA and
trxB genes was seen . We also show that the S . aureus
thioredoxin reductase appears to be essential for growth . This
observation, coupled with structural differences between the
bacterial and mammalian thioredoxin reductases, suggests that it may
serve as a target for the development of new antimicrobials .
Staphylococcus aureus is a major human pathogen causing a wide
variety of diseases, ranging from mild skin infections to life-threatening
septicemia, meningitis, and toxic shock syndrome (28) .
Its abilities to colonize and exploit host functions and to cope with
an often hostile environment make it a highly successful and
opportunistic pathogen that is difficult to eradicate . Several
factors contribute to its pathogenesis . In the first place, S .
aureus determines a broad array of cell wall-associated proteins
that enable it to evade host immune defense systems as well as
numerous extracellular proteins, including hemolysins, toxins, and
proteases, many of which are virulence factors (31) .
Second, S . aureus is able to counteract and eliminate a
variety of reactive oxygen intermediates, such as superoxide anions
and hydrogen peroxide, which pose a threat to its survival . These
species are generated during physiological conditions from the
incomplete reduction of oxygen or from exposure to light, radiation,
redox active agents, or host phagocytes and result in damage to
proteins, lipids, and DNA (47) . Third, outside its
host, S . aureus can withstand numerous environmental stresses,
chief among which are desiccation, osmotic stress, starvation, and
heat shock, which account for its persistence and survival in nature
(6, 7) .
In common with other facultative aerobes, S . aureus can grow
in the absence of oxygen either by fermentation or by using an
alternative terminal electron acceptor such as nitrate . Oxygen
availability or the lack of it may be a key factor in S . aureus
pathogenicity, potentially triggering events such as host cell
adherence and invasiveness that are necessary for colonization on
cell surfaces, tissues, and other environmental niches (9,
26) . Indeed, the ability of S . aureus to adapt
to extreme changes in external oxygen concentration implies the
existence of redox-dependent processes that regulate the expression
of genes in the transition from aerobic to anaerobic growth and vice
versa .
Thiol-specific redox systems play a major role in the protection
of cells against toxic oxygen species as well as in maintaining the
intracellular thiol-disulfide balance and in providing reducing power
to key reductive enzymes such as ribonucleotide reductases . In many
prokaryotes this is achieved by a number of small proteins,
thioredoxin or glutaredoxin, each of which contains a pair of redox
active cysteines . Thioredoxin is maintained in its reduced form by
thioredoxin reductase, while glutaredoxin is kept reduced by
glutathione/glutathione reductase, in both cases at the expense of
NADPH (3, 20) . We have previously shown
that S . aureus and many other gram-positive bacteria lack
glutathione and its cognate enzymes (1,
32, 34) and must therefore employ
thioredoxin and alternative thioredoxin-based systems, such as the
peroxiredoxins and alkyl hydroperoxide reductases, to carry out the
above cellular processes (17, 42) .
In some of these bacteria, in particular the actinomycetes, a novel
low-molecular-weight glycothiol, mycothiol, is made in high
concentrations with properties that suggest it has a role analogous
to that of glutathione in intermediary metabolism (33) .
In this paper we analyze the expression of the S . aureus thioredoxin
(trxA) and thioredoxin reductase (trxB) genes in growth and
in response to changes in oxygen concentration and to compounds
that cause oxidative stress . We further show that the thioredoxin
system is essential for growth .
Strains, media, and culture conditions. The bacterial strains
and plasmids used in this study are described in Table
1 . S . aureus strains were grown at 30°C or 37°C in
tryptone soy broth (TSB; Difco) supplemented with erythromycin (12 µg
ml-1) where appropriate . Transformants were selected on
TSB agar plates containing antibiotics . Escherichia coli was
grown in Luria-Bertani medium with the addition of ampicillin (100 µg
ml-1) or kanamycin (50 µg ml-1) as needed .
| TABLE 1 . Bacterial strains and plasmids used in this study
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S . aureus liquid cultures were grown aerobically at 37°C in an
air orbital shaker at 250 rpm . For limiting oxygen conditions, the
standard anaerobic growth conditions used for growth of cultures were
agitation at 100 rpm in an orbital shaker at 37°C in TSB medium
supplemented with cysteine (5.7 mM) to scavenge traces of oxygen and
0.001% resazurin as a redox indicator (29) .
Wheaton serum bottles (100-ml capacity) containing 60 ml of the
above-described medium were purged with nitrogen gas for 4 min at a
pressure of 0.75 atm prior to being autoclaved . Aerobic cultures were
subcultured (0.5 ml) in 60 ml of the above-described medium and grown
for 16 to 20 h to stationary phase (optical density at 600 nm [OD600],
2),
and 2 ml was used to inoculate 60 ml of the same medium .
DNA manipulations. For E . coli, preparation of
plasmids, DNA manipulations, and transformation of competent cells
were performed as previously described (44) . For
S . aureus, genomic DNA was prepared as described previously (35) .
Standard procedures were employed for restriction enzyme digestion,
ligation, Southern blotting, and radiolabeling of
oligodeoxynucleotides (44) unless otherwise stated . The
nucleotide sequences of the DNA regions containing the S . aureus
Oxford trxA and trxB genes were determined from both
strands by the dideoxy procedure with the ABI Prism 377 automatic
sequencer (Perkin-Elmer Biosystems) and the Prism dye terminator
cycle sequencing kit (Applied Biosystems) .
Construction of trxB insertion mutants. To create a
disruption of the S . aureus trxB gene, an internal fragment ( 0.7
kbp) of the Oxford trxB gene (nucleotides 1400 to 2076 of
GenBank
AJ223781) was amplified by PCR with the forward primer (with an
added EcoRI restriction site) 5' CCCCGAATTCACAGAAGAAGTAGAG-3'
and the reverse primer (with an added BamHI restriction site)
5'-CCCCGGATCCCTGGTACTGATGTTGTC-3' and ligated into the
corresponding sites of the E . coli-S . aureus
temperature-sensitive shuttle vector pAUL-A (42)
to give pOI7 . S . aureus RN4220 was electroporated with pOI7,
and transformants were selected for growth at 30°C (the permissive
temperature) and at 40°C (the nonpermissive temperature) in the
presence of erythromycin . Integration of pOI7 into the chromosome by
a single reciprocal recombination event is expected to result in
disruption of the chromosomal trxB gene .
Control plasmid pOI8 contains a
0.7-kbp
internal DNA fragment of the glnA gene (nucleotides 1893 to
2592 of GenBank
X76490) inserted in the HindIII polylinker site of pAUL-A;
the DNA fragment was obtained from PCR amplification of S . aureus
Oxford genomic DNA with 5'-GGGGAAGCTTTAGAGGATATGGGCTTCG-3' as
the forward primer (with an added HindIII restriction site)
and 5'-GGGGAAGCTTTTTTAATAACTTCATTTTCACGC-3' as the reverse
primer (with an added HindIII restriction site) . Control
plasmid pOI15 contains internal DNA fragments of the trxB and
glnA genes . It was obtained by inserting the HindIII
glnA fragment into the corresponding site in the polylinker of
pOI7 . The structures of the pAUL-A disruption vectors were confirmed
by restriction analysis and nucleotide sequencing .
RNA extraction. Total RNA was isolated from cultures of
exponentially grown S . aureus cells in TSB medium at 37°C as
described (13) with modifications (29) .
Cells (50 mg wet weight) were lysed in 0.3 ml of TES buffer
containing 150 mM NaCl, 78 mM EDTA,100 mM Tris-HCl, pH 7.5, and 100
µg of lysostaphin (Sigma) ml-1, and RNA was extracted with
1.5 ml of RNazol B (Tel-test) . RNA concentrations were determined by
A260 measurements, and RNA integrity was analyzed
by agarose-formaldehyde gel electrophoresis (44) .
Northern hybridization. Northern blot analysis was used to
quantify the amounts of trxA and trxB mRNA and to
determine the sizes of transcripts in total RNA from S . aureus
Oxford cultures grown under aerobic and anaerobic conditions as
previously described (29) . Internal fragments of
the genes trxA (nucleotides 2333 to 2649 of GenBank
AJ223480) and trxB (nucleotides 1424 to 2069 of GenBank
AJ223781) were amplified by PCR and labeled with the DIG PCR
probe synthesis kit (Roche Molecular Biochemicals) . The effect of
oxidative stress compounds on trxA and trxB
transcription was determined for S . aureus 8325-4 and SH1000 .
Cultures of cells grown to the mid-exponential phase (OD600
1.0)
were incubated for 5 to 15 min with diamide, menadione, hydrogen
peroxide, and
-butyl
hydroperoxide at the concentrations indicated in Results, and
total RNA was isolated and analyzed as described above . The
concentrations correspond to those described elsewhere (27,
36) .
Primer extension. Primer extension was carried out with
avian myeloblastosis virus reverse transcriptase (Promega)
essentially as described (29) . The reverse primers
used in reactions were trxA, 5-TTACATGGACCACACCATGTTGCCCAAAAA-3',
complementary to nucleotides 2402 to 2431 of GenBank
AJ223480, and trxB, 5'-GTAATCATTTCGAAACC-3', complementary
to nucleotides 1424 to 1440 of GenBank
AJ223781 .
Sequence analysis, database search, and deduced protein analysis.
Sequence entry, primary analysis, and open reading frame (ORF)
searches were performed with the National Center for Biotechnology
Information server ORF Finder (http://www.ncbi.nim.nih.gov/gorf/.html)
and the Clone Manager 7 program (Scientific & Educational
Software, Durham, N.C.) . Primary sequences of S . aureus trxA
and trxB were identified in databases of the University of Oklahoma
Advanced Center for Genome Technology (http://www.genome.ou.edu/staph.html/)
(strain NCTC 8323), the Institute for Genomic Research (TIGR [http://www.tigr.org/])
(strain COL), and the Staphylococcus aureus Sequencing Group
at the Sanger Centre [http://www.sanger.ac.uk/Projects/S_aureus/)
(EMRSA-16 strain 252 and methicillin-susceptible strain 476)
with BLAST algorithms BLASTn and tBLASTn (2) . Pairwise and
multiple sequence alignments were performed with the ClustalW
program, version 1.84 (15), with the EMBL ClustalW
server (http://www2.ebi.ac.uk/clustalw/?),
and the Network Protein Sequence Analysis server (http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=/NPSA/npsa_clustalw.html) .
Other methods. Signals from Northern blots were scanned and
intensities were measured with the ImageMaster software system
(Pharmacia) .
Nucleotide sequence accession numbers. The nucleotide
sequences of the DNA regions containing the S . aureus Oxford
trxA and trxB genes have been deposited in the GenBank
database with accession nos.
AJ223480 and
AJ223781, respectively .
Organization of the S . aureus trxA and trxB genes and
sequences of the promoter regions. The starting point for this study
was the isolation and sequencing of the S . aureus Oxford
trxA and trxB genes and identification of their promoter
regions . The S . aureus trxA and trxB genes (GenBank
accession no.
AJ223480 and
AJ223781, respectively) were originally isolated with information
derived from the known sequences of related genes . Figures
1A and 2A depict the DNA regions
containing the trxA and trxB genes . Primer extension
analysis identified two trxA transcription start points, each
beginning with an adenine nucleotide (Fig . 1B) . The nucleotide
sequence of the 5' upstream regulatory region of the S . aureus
trxA gene is shown in Fig . 1C . The 5' end of the
major transcript maps 31 nucleotides upstream of the ATG translation
start codon, and the 5' end of the minor transcript occurs at 131
nucleotides from the ATG codon . The two start sites are separated by
99 nucleotides . The -10 sequences but not the -35 sequences upstream
of the major and minor transcription start points closely matched
the corresponding consensus motif in the promoters of gram-positive
bacteria recognized by RNA polymerase containing the vegetative
sigma factor
A
(14) . Two 22-bp imperfect direct repeats were
located in the region containing the trxA promoters, one just
downstream of the minor promoter and the other spanning and
overlapping the major promoter .
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FIG . 1 . Chromosomal organization, primer extension analysis, and
sequence of the S . aureus Oxford trxA gene . (A) The gene
organization is identical to that found in all of the S . aureus
strains referred to in this work; the numbering of nucleotides in
intergenic regions is for S . aureus Mu50, accession no..
NC_002758 . The
5.3-kbp
DNA region containing trxA and flanking genes is shown . Gene
designations: mutS2 encodes a mismatch repair ATPase; trxA
encodes thioredoxin; uvrC encodes a subunit of the endonuclease
nucleotide excision repair system . (B) Total RNA was isolated from
aerobic cultures of S . aureus Oxford . Primer extension was
carried out as described in Materials and Methods, and the products were
separated by electrophoresis under denaturing conditions alongside
sequencing reactions with the same primers . Arrows point to the A
nucleotides of the two trxA transcription start sites . (C)
Nucleotide sequence of the trxA promoter (numbering according to
GenBank
AJ223480) . Transcription start points are shown by bent arrows above
the underlined boldface A nucleotides . The trxA ATG translational
start codon (underlined) and its ribosome-binding site are shown in
boldface italic letters . Putative -10 and -35 hexamer sequences are
shown as boxed boldface italic letters . Two direct repeats are shown by
grey arrows above the nucleotide sequences . The TAA stop codons of the
mutS2 and trxA genes are marked by an asterisk . A putative
rho-independent transcriptional terminator is indicated by two solid
inverted arrows below the nucleotide sequence.
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FIG . 2 . Chromosomal organization, primer extension analysis, and
sequence of the S . aureus Oxford trxB gene . (A) The
organization is identical to that found in all of the S . aureus
strains referred to in this work; the numbering of nucleotides in
intergenic regions is for S . aureus Mu50, accession no.
NC_002758 . The
11.4-kbp
DNA region containing trxB and flanking genes is shown . Gene
designations: uvrA and uvrB encode subunits of the
endonuclease nucleotide excision repair system; hprK encodes a
bifunctional kinase-phosphatase; lgt encodes a prelipoprotein
diacylglyceroltransferase; yvoF encodes a putative
acetyltransferase; yvcD encodes a hypothetical protein
(designations according to reference 8); trxB
encodes thioredoxin reductase . The directions of ORFs are indicated by
arrows . Boxes indicate two intergenic regions that contain STAR tandem
direct repeats . (B) Total RNA was isolated from aerobic cultures of
S . aureus Oxford . Primer extension was carried as described in
Materials and Methods, and the products were separated by
electrophoresis under denaturing conditions alongside sequencing
reactions with the same primers . An arrow points to the A nucleotide of
the trxB transcription start point . (C) Nucleotide sequence of
the trxB promoter (numbering according to GenBank
AJ223781) . The transcription start point is shown by a bent arrow
above the underlined boldface A nucleotide . The trxB ATG
translational start codon (underlined) and its ribosome-binding site are
shown in boldface italic letters . Putative -10 and -35 hexamer sequences
are shown as boxed boldface italic letters . The TAG and TAA
translational stop codons of the yvcD and trxB genes,
respectively, are marked by asterisks . Four pairs of inverted repeats
located downstream of trxB are shown by arrows below the
nucleotide sequence . Three long imperfect STAR direct repeats containing
an ApaI endonuclease restriction site (GGGCCC) are indicated in
bold letters.
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Primer extension analysis identified a single trxB transcription
start point (Fig . 2B) . The 5' end of the transcript
begins with an adenine nucleotide and maps 29 nucleotides upstream of
the ATG start codon . Figure 2C shows the nucleotide
sequence of the 5' upstream regulatory region of the trxB
gene . The -10 sequence but not the -35 sequence upstream of the
trxB transcription start site closely matched the corresponding
consensus motif of
A-dependent
promoters . Two 11-bp direct repeats containing one mismatch
overlapped the -10 and -35 sequences of the trxB promoter .
Comparison of the trxA promoter regions of the Oxford strain
from this work with that of the genomes of seven other S . aureus
strains, NCTC8325, COL, EMRSA-16 strain 252, methicillin-susceptible
strain 476, N315, Mu50, and MW2 (4, 25),
revealed a very high degree of conservation . We noted just one
difference in the Oxford trxA minor promoter region, a single
nucleotide change located between the -10 and -35 RNA polymerase
recognition motifs . Comparison of seven S . aureus trxB
promoters showed them to be identical .
Inspection of the DNA region downstream of the S . aureus Oxford
trxB gene revealed the presence of several STAR direct repeats
that were noted previously (8), each containing an
ApaI restriction site, and closely related to those present in
each of the S . aureus strains referred to above . Similar
repeats were also noted in the region upstream of trxB between
the uvrA and hprK genes . Examination of the trxA
upstream and downstream regions revealed the presence of additional
STAR direct repeats, but these mapped
70
and
13
kb away . While the trxA and trxB genes mapped to quite
different sites in the chromosome, they are both linked to genes
involved in excision repair of DNA damage after UV irradiation . Thus,
trxA is located in a cluster of conserved genes,
mutS2-trxA-uvrC, and trxB is located in a gene cluster
just downstream of the uvrAB genes . A similar organization of
trx genes occurs in Staphylococcus epidermidis and
Staphylococcus xylosus (21) .
Transcription analysis of the trxA and trxB genes in
aerobic and anaerobic growth conditions. Northern analysis was used to
quantify transcription of the S . aureus trxA and trxB
genes in aerobic and anaerobic growth . Figure 3
shows the growth profiles and amount of trxA and trxB
transcripts present in total RNA from aerobic and anaerobic cultures
of S . aureus Oxford at different stages of growth . In aerobic
conditions (Fig . 3A) a single trxB transcript was
detected with the expected size of
1.1
kb . The amount of the trxB transcript was approximately
constant in the early and mid-exponential phases of growth, increased
two- to threefold at the late stage of exponential growth, and
dropped gradually to the initial level in the stationary phase of
growth . Two trxA transcripts were detected . Their sizes,
0.4
kb and
0.5
kb, corresponded to those predicted from the positions of the
two trxA transcription start points . The amounts of the two
transcripts were about the same, and their levels followed a profile
similar to that of the trxB transcript . In anaerobic
conditions (Fig . 3B), the sizes of the transcripts were
identical to those found in aerobic growth, demonstrating that the
same promoters are used for expression of the trxA and trxB
genes under aerobic and anaerobic conditions . The relative amounts
of trxA and trxB transcripts made under aerobic and
anaerobic conditions were about the same, establishing that
expression of the thioredoxin and thioredoxin reductase genes is not
modulated by oxygen .
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FIG . 3 . Northern hybridization analysis of S . aureus Oxford
trxA and trxB transcripts in aerobic and anaerobic cultures .
Total RNA was obtained from aerobic (A) and anaerobic (B) cultures at
the early and mid-exponential phases and stationary phase,
electrophoresed, blotted, and hybridized to trxA and trxB
probes (see Materials and Methods) . Sizes of transcripts are in
kilobases; arrows indicate the positions of transcripts . (C) Growth
profiles of S . aureus Oxford in aerobic and anaerobic conditions .
The OD600 was used to follow the growth of cultures in TSB
medium at 37°C . The arrows in panel C indicate the samples in panels A
and B.
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Transcriptional regulation of S . aureus trxA and trxB in
response to disulfide and oxidative stress agents. The effects of
different disulfide and oxidative stress compounds on transcription
of the S . aureus trxA and trxB genes are shown in Fig.
4 and 5 . These experiments were carried out
with isogenic strains 8325-4 and SH1000 in order to determine whether
the general
B
stress sigma factor plays a role in the transcriptional response .
SH1000 possesses a functional
B
stress factor, and 8325-4 lacks a functional
B
stress factor . Figure 4 shows representative
Northern analyses of the trxA and trxB genes following treatment
of mid-exponential-phase cultures with diamide, a thiol-specific
oxidizing agent . Figure 5 shows results for treatment
with menadione, a redox cycling agent;
-butyl
hydroperoxide, an organic peroxide; and hydrogen peroxide .
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FIG . 4 . Northern hybridization analysis of S . aureus 8325-4 and
SH1000 trxA and trxB transcripts: effect of diamide .
Cultures of 8325-4 and SH1000 were grown aerobically to the
mid-exponential phase of growth and treated with 0.5 and 2.0 mM diamide
for 15 min . Total RNA obtained from cultures at an OD600 of
1.0
was electrophoresed, blotted, and hybridized to trxA and trxB
probes (see Materials and Methods) . Arrows indicate the positions of
transcripts.
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FIG . 5 . Northern hybridization analysis of S . aureus 8325-4 and
SH1000 trxA and trxB transcripts: effect of oxidative
stress agents . Cultures of 8325-4 and SH1000 were grown aerobically to
the mid-exponential phase of growth and treated with (A) menadione, (B)
-butyl
hydroperoxide, and (C) hydrogen peroxide at the concentrations and for
the times shown . Total RNA obtained from cultures at an OD600
of
1.0
was electrophoresed, blotted, and hybridized to trxA and trxB
probes (see Materials and Methods) . Arrows indicate the positions of
transcripts.
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Diamide at 0.5 and 2.0 mM increased trxB transcription in both
SH1000 and 8325-4 by three- to fivefold at 15 min after treatment and
had a similar effect on trxA transcription . Only the smaller
of the trxA transcripts was induced . Menadione at 0.1 mM increased
trxB transcription in 8325-4 by three- to fourfold at 7.5 and
15 min but had little effect on trxB transcription in SH1000 .
The effects on trxA transcription in 8325-4 and SH1000 were
approximately three- to fourfold and two- to threefold, respectively .
As with diamide, the effect on trxA induction was confined to
the smaller transcript . At higher concentrations, above 0.5 mM,
menadione had an inhibitory effect on growth and on induction of
trxA and trxB transcription . Paraquat, another redox cycling
agent, had no significant effect on transcription of either
trxA or trxB at up to 2 mM (results not shown) .
Treatment with hydrogen peroxide and
-butyl
hydroperoxide gave quite different responses . Hydrogen peroxide at
low (0.05 mM) and high (1 mM) concentrations had little or no effect
after 15 to 30 min on transcription of trxA or trxB . In
contrast,
-butyl
hydroperoxide at 0.1 to 2 mM increased trxB transcription in
8325-4 and SH1000 by about three- to fivefold at 7 to 14 min after
treatment . The above concentrations of
-butyl
hydroperoxide had a similar effect on induction of trxA
transcription in both strains . As before, only the smaller of the two
trxA transcripts was induced . The results show that each of
the oxidative stress compounds diamide, menadione, and
-butyl
hydroperoxide induced transcription of the S . aureus trxA and
trxB genes and that the response was not dependent on the
B
alternative sigma factor .
S . aureus trxB gene is essential for growth. To
establish whether the trxB gene is essential for growth,
plasmid pOI7, which contains an internal
0.7-kbp
fragment of the trxB gene lacking essential N- and C-terminal
regions, was introduced by electroporation into S . aureus
RN4220, and transformants were selected on plates containing
erythromycin . Plasmid pOI7 is a derivative of the shuttle vector
pAUL-A, which is temperature sensitive for replication at 40°C and
carries an erythromycin resistance gene . A single homologous
recombination event between the plasmid and the host chromosome is
expected to result in disruption of the trxB gene .
One transformant out of several hundred that grew at the permissive
temperature, 30°C, was able to grow at the nonpermissive
temperature, 40°C . PCR analysis showed that it contained the
wild-type trxB locus . Repeated attempts to isolate a trxB
disruptant in this way were unsuccessful . Control experiments
carried out with plasmid pOI8, which contains an internal
0.7-kbp
fragment of the glutamine synthetase glnA gene, showed that
all of the transformants that were isolated at 30°C grew at
40°C and that the latter contained an insertion of the plasmid at the
expected glnA chromosomal site .
A second control plasmid, pOI15, was constructed to contain both
the
0.7-kbp
trxB and 0.7-kbp glnA internal DNA fragments inserted
next to one another in the pAUL-A vector . Following electroporation,
24 of the transformants that grew at 30°C were tested for growth at
40°C . All of the transformants grew at 40°C . PCR analysis of several
of them showed that they contained a wild-type trxB locus and
an integrated copy of the plasmid at the glnA locus .
Originally, thioredoxin was identified in E . coli as the hydrogen
donor system for ribonucleotide reductase (41) . Soon
after, E . coli was found to possess an alternative thiol redox
system that utilizes glutathione and glutaredoxin and can effectively
substitute for thioredoxin (19) . E . coli mutants
that fail to make a functional thioredoxin or thioredoxin reductase
are able to grow because they use the glutathione-glutaredoxin
system . In contrast, in the studies described here, we were unable to
isolate an S . aureus trxB mutant, implying that the S . aureus
thioredoxin system is essential for growth . We presume, therefore,
that S . aureus lacks an alternative thiol redox system to replace
the thioredoxin redox system . Similar conclusions were reached
in studies with Bacillus subtilis (46) and
Streptomyces coelicolor (unpublished results), where attempts to
isolate insertional trxA and trxB mutants,
respectively, were unsuccessful . These findings are compatible with
our previous observations which demonstrated that certain
gram-positive bacteria, including S . aureus, B . subtilis
and S . coelicolor do not synthesize glutathione (1,
34) .
Two other studies have shown that a functional thioredoxin trxA
gene is essential for the phototrophic and heterotrophic growth
of the cyanobacterium Synechocystis and for aerobic and anaerobic
respiration of the facultative photosynthetic bacterium Rhodobacter
sphaeroides (39) . However, both of these
gram-negative bacteria synthesize glutathione (34),
and it is possible that some essential thioredoxin-mediated process
in these organisms cannot be replaced by the glutathione-glutaredoxin
system .
Transcriptional analysis showed that the S . aureus Oxford trxA
and trxB genes were equally well expressed in aerobic and anaerobic
conditions, demonstrating that the trx genes are not significantly
modulated by the level of oxygen (Fig . 3) . Since the
thioredoxin system appears to be essential for aerobic growth, this
result suggests that it is also likely to be needed for anaerobic
growth . In aerobic conditions, an essential role for the S . aureus
thioredoxin system is to transfer reducing equivalents from NADPH to
the class Ib ribonucleotide reductase for the synthesis of
deoxyribonucleotides from ribonucleotides . However, this does not
appear to be the case for anaerobic growth because the nrdDG
genes that encode the class III ribonucleotide reductase are
expressed exclusively in the absence of oxygen (29),
and the anaerobic ribonucleotide reductase derives its reducing power
from formate (30) . Clearly, the thioredoxin system
must play a critical role in some other essential aspect of anaerobic
cellular metabolism . It is therefore of interest that in
Rhodobacter sphaeroides, expression of the trxA gene was
found to be governed by oxygen tension (38) .
Several oxidative stress compounds were found to cause rapid
induction of transcription of the S . aureus trxA and trxB genes .
The most pronounced effects were seen with diamide, menadione,
and
-butyl
hydroperoxide . Diamide is a thiol-specific oxidant that reacts with
free thiols in a stoichiometric manner to promote disulfide bond
formation (23) . In E . coli a functional thioredoxin
or glutaredoxin system was found to be necessary to cope with
diamide stress (43); similarly, in S . coelicolor
inactivation of the
R
factor that is responsible for modulating thioredoxin expression
resulted in sensitivity to diamide (36, 37) .
The increased expression of the S . aureus trxA and trxB
genes following diamide treatment therefore appears to be a response
to combat increased disulfide bond formation . These results are in
accordance with a recent study in B . subtilis which identified
trxA and trxB among the genes that were strongly
induced by exposure to diamide (27) .
Menadione had an effect similar to that of diamide on induction of
thioredoxin transcription . Menadione and other redox cycling agents
are reduced in the cell by NADPH and oxidoreductases to produce
superoxide anions . In E . coli thioredoxin can reduce menadione
(18) . If the S . aureus thioredoxin is able to reduce
menadione, then its effect will be to withdraw electrons from
the thioredoxin pathway . Consequently, the level of disulfides will
increase, and increased trxA and trxB expression will,
as with diamide, trigger a cellular response to overcome thiol
oxidation .
The induction of trxA and trxB genes in response to
-butyl
hydroperoxide can be explained in the same way . Organic peroxides are
often highly toxic compounds that oxidize thiols to disulfides and
generate reactive free radicals that damage DNA and lipids .
Peroxiredoxins that detoxify organic peroxides are well characterized
in numerous bacteria . Alkylhydroperoxide reductases comprise two
subunits; the larger protein, AhpF, is highly homologous to
thioredoxin reductase and can use NADPH as the direct electron donor .
Thus, exposure of S . aureus to alkylhydroperoxides will, it is
expected, effectively drain away electrons from the thioredoxin
pathway and lead to increased formation of disulfides and result in
induction of trxAB expression . Unexpectedly, we were unable to
detect any marked effects of hydrogen peroxide on induction of the
trxA and trxB genes . Two recent reports of studies in
B . subtilis and Oenococcus oeni showed that hydrogen peroxide
caused a severalfold induction of the trxA gene (22,
46) . We presume that the presence of a potent
catalase in S . aureus effectively eliminates hydrogen peroxide
(6) .
A variety of studies have shown that the S . aureus
B
factor positively controls the transcription of a family of genes in
response to environmental stresses, including recovery from
heat shock and biofilm expression, and also that it influences
expression of some virulence-associated genes but is not required for
resistance to ethanol or osmotic shock or for starvation survival (5,
11, 40) . Most of the 27 genes belonging to
the S . aureus
B
regulon were shown to be homologous to B . subtilis genes,
several of which are known to be regulated in response to stress by
B
(11) . In B . subtilis,
B
was found to mediate increased transcription of trxA in
response to heat and salt stress and ethanol treatment (46) .
Transcription of the trxA gene occurs at two promoters, one
utilizing the general stress factor
B
and the other the vegetative
A
factor . Both promoters were induced in response to ethanol and heat,
whereas the
A-dependent
promoter was induced with hydrogen peroxide .
In this study we were unable to find any marked effect of the
alternative
B
factor on the transcription of the S . aureus trxA and trxB
genes in response to exposure to disulfide and oxidative stress
compounds . The S . aureus trxA gene is transcribed from two
promoters, albeit at different levels; in the Oxford strain, the two
trxA transcripts were made in similar amounts, and in 8325-4
and SH1000 the smaller transcript was the dominant one . However, in
contrast to the situation in B . subtilis, both were
A
dependent, and in both their transcription in response to oxidative
stress was independent of a functional
B
factor . Possibly, the existence of multiple promoters in these
bacteria serves to ensure sufficient levels of thioredoxin to protect
cells in response to both specific oxidative stresses and general
nonspecific stresses .
Thiol redox processes play a central role in a broad range of
cellular processes . In addition to its role in maintaining the
cellular redox homeostasis, for protection against reactive oxygen
species, and in provision of electrons to reductive enzymes, it has
been shown, for example, to be implicated in mammalian cells in
controlling cell proliferation and development and in apoptosis (10) .
One aspect of particular interest focuses on the possibility that the
thioredoxin system may provide a new target for the development of
compounds directed against gram-positive bacteria . This idea is
premised on the fact that the bacterial and mammalian thioredoxin
systems differ in some important ways . Thus, while the S . aureus
thioredoxin and thioredoxin reductase proteins are very similar to
those of other gram-positive bacteria and have the same active-site
motifs, CGPC and CAV/TC, respectively, the redox active site of the
human thioredoxin reductase is a hexapeptide, CVNVGC, which is
identical to that present in the active site of the human glutathione
reductase (16) . Also, the NADPH and flavin adenine
dinucleotide nucleotide binding domains of the human thioredoxin
reductase are more similar to those of the human glutathione
reductase than to their prokaryotic counterpart . Furthermore, the
human thioredoxin reductase, like the glutathione reductase, is a
much larger molecule than the bacterial enzyme due to the presence of
a dimer interface domain .
Figure 6 shows the molecular phylogeny of bacterial and
human glutathione and thioredoxin reductases and clearly
distinguishes between the bacterial and human thioredoxin reductases
The bacterial species shown are those of selected pathogenic
organisms . Because S . aureus contains a thioredoxin system
that appears to be essential for growth, lacks an alternative
glutathione based system, and differs from the human enzyme in key
structural and mechanistic respects, it may prove to be an attractive
target for the development of a new class of antistaphylococcal
compounds .
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FIG . 6 . Phylogeny of bacterial and human thioredoxin and glutathione
reductases (TR and GR, respectively) . The deduced amino acid sequences
of thioredoxin reductase were determined for the proteins from
Brucella suis (GenBank
AE014445), Chlamydia pneumoniae (SwissProt Q9Z8M4),
Clostridium tetani (SwissProt Q890T3), Coxiella burnetii
(GenBank
X75627), Escherichia coli (SwissProt P09625), Haemophilus
influenzae (SwissProt P43788), Helicobacter pylori (SwissProt
P56431), Homo sapiens 1 (SwissProt Q16881), H . sapiens 2
(GenBank
AF171055), H . sapiens 3 (GenBank
AF171054), Listeria monocytogenes (SwissProt O32823),
Mycobacterium leprae (SwissProt P46843), Mycobacterium
tuberculosis (SwissProt P52214), Mycoplasma genitalium
(SwissProt P47348), Neisseria meningitides (GenBank
AL162756), Pseudomonas aeruginosa (SwissProt Q9I0M2),
Rickettsia prowazekii (SwissProt Q9ZD33), Staphylococcus aureus
(SwissProt O54079), Streptococcus pyogenes (SwissProt Q878I8),
Treponema pallidum (SwissProt O83790), Vibrio cholerae
(SwissProt Q9KSS4), and Yersinia pestis (Swiss Prot: Q8ZGC9) .
Deduced amino acid sequences of glutathione reductases used were from
Escherichia coli (SwissProt P06715), Haemophilus influenzae
(SwissProt P43783), Homo sapiens (SwissProt P00390), and
Streptococcus pyogenes (GenBank
AE014147).
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This work was supported in part by the Israel Science Foundation
(787/01) . We are grateful to the University of Oklahaoma Advanced
Center for Genome Technology, TIGR, and the Sanger Center for the use
of preliminary S . aureus genomic sequence data .
We thank Simon Foster and Steven Projan for providing strains and
plasmids .
* Corresponding author . Mailing address: Department of
Molecular Microbiology and Biotechnology, George S . Wise Faculty of Life
Sciences, Tel Aviv University, Ramat Aviv 69978, Israel . Phone: 972-3-6409411 .
Fax: 972-3-6422245 . E-mail:
yaira@post.tau.ac.il .
Present address: Felsenstein Medical Research Center, Rabin Medical
Center, Beilinson Campus, Petah Tikva, Israel .
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