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Journal of Bacteriology, August 2002, p . 4536-4543, Vol . 184, No . 16 Simultaneous Coexpression of Borrelia burgdorferi Erp Proteins Occurs through a Specific, erp Locus-Directed Regulatory MechanismNazira El-Hage and Brian Stevenson* Department of Microbiology, Immunology and Molecular Genetics, University of Kentucky College of Medicine, Lexington, Kentucky 40536-0298 Received 12 March 2002/ Accepted 21 May 2002
Among the B . burgdorferi proteins synthesized during mammalian infection are members of the Erp (OspE/F-related) protein family (3, 32, 42, 46, 48) . A single bacterium can carry multiple erp loci, located on as many as 10 different, but homologous, plasmids (14, 15, 47) . Recent studies strongly suggested that those plasmids, known as cp32s, are prophages (23, 24) . Erp proteins are located on the bacterial outer surface, and those encoded by an individual bacterium may share anywhere between 16 and 100% identical amino acid sequences among themselves (2, 15, 25, 42, 43, 47) . Recently, it was shown that Erp proteins bind complement inhibitory factor H (30, 44), suggesting that they contribute to the ability of B . burgdorferi to infect mammals by blocking host complement-mediated killing . Previous studies have shown that B . burgdorferi regulates synthesis of Erp proteins (1, 6, 29, 43, 45, 48) . Among the factors that influence erp transcription levels is temperature, with significantly higher levels of erp mRNA and Erp proteins being produced by bacteria grown at 34°C than by those grown at 23°C . These temperatures are hypothesized to model those experienced by the bacteria during mammalian and tick infection, respectively . All erp loci contain highly similar promoter regions, suggesting that they are all transcriptionally coregulated (47) . Furthermore, a DNA-binding protein was recently observed to bind specifically to all tested erp promoter DNAs (6) . For those reasons, it has been hypothesized that all Erp proteins are coexpressed and that circumstances affecting transcription of one erp locus will have similar effects on other erp genes (42, 47) . However, some studies have suggested that a bacterium can independently regulate expression of erp genes, transcribing some genes while silencing others (1, 3, 18, 48) . It has also been suggested that erp gene regulation may largely be due to temperature-related differences in plasmid supercoiling (39) . Several other pathogenic bacteria thermoregulate gene expression of proteins coincidental with changes in DNA supercoiling (20, 36, 37, 49) . To test these hypotheses, we investigated the abilities of B . burgdorferi to express individual Erp proteins . We also investigated DNA supercoiling of B . burgdorferi plasmids after they had been grown at different culture temperatures . Furthermore, we analyzed whether the enzyme responsible for controlling negative DNA supercoiling, DNA gyrase, influenced the regulation of erp gene expression . Additionally, if regulation of Erp proteins was due to a global mechanism such as plasmid supercoiling, we would expect similar regulation of other cp32-encoded proteins . With this in mind, we also analyzed the regulation of three additional genes located adjacent to each erp locus .
For temperature shift assays, bacteria were grown at 23°C to mid-logarithmic phase (5 x 107 cells per ml) and were then diluted 1:100 into fresh medium and grown at 34°C (45) . For pH effect studies, bacteria were grown to mid-logarithmic phase at a constant 34°C in BSK-II medium buffered with 25 mM HEPES that was adjusted to a pH of either 7.0 or 8.0 (13) . Recombinant proteins. Recombinant Erp proteins have been previously described (25, 42) . Recombinant BppA, BppB, and BppC proteins were constructed using the cre-lox Echo cloning system (Invitrogen, Carlsbad, Calif.) . Each recombinant plasmid was sequenced to confirm that the DNA insert was in frame and that no incorrect nucleotide was incorporated during PCR amplification . Polyhistidine-tagged fusion proteins were purified using His-Bind Resin Column Chromatography kits (Novagen, Madison, Wis.) . Each protein was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and visualized by staining with Coomassie brilliant blue in order to verify the size and purity of each protein . Antibodies. Monoclonal antibodies (MAb) B11 and B5, directed against the B31 ErpA/I/N and OspC proteins, respectively, were produced by hybridomas derived from mice infected with this strain by tick bite (25, 27, 34) . Tom Schwan (Rocky Mountain Laboratories, Hamilton, Mont.) provided MAb H9724, specific for the flagellar FlaB subunit of Borrelia spp . (8) . Polyclonal antiserum directed against each Erp protein was previously described (25) . Polyclonal antibodies directed against recombinant BppA, BppB, and BppC proteins were each generated by vaccinating rabbits with approximately 30 µg of one purified recombinant protein in complete Freund's adjuvant, followed by booster vaccinations 2 and 4 weeks later with the same dose of protein in incomplete Freund's adjuvant . All rabbits were bled out 2 to 4 weeks after the final boost (Animal Pharm Services, Healdsburg, Calif.) . Some Erp-directed antisera contained antibodies that cross-reacted with other Erp proteins due to their similar amino acid sequences (25) . In such an event, cross-reactive antibodies were removed by preadsorption with recombinant Erp proteins and Escherichia coli lysates for 1 h at 37°C (25) . Specificities of preadsorbed antisera were then assessed by immunoblot analysis with B . burgdorferi B31 lysates . Each Bpp polyclonal antibody was preadsorbed with an E . coli lysate, and the specificity of each antiserum was assessed by immunoblot with the corresponding recombinant protein . BALB/c mice were infected by subcutaneous inoculation of 103 culture-grown clonal B . burgdorferi B31 organisms . Three and a half months after infection, sera from 11 mice were collected and used in immunoblot analyses of recombinant BppA, BppB, and BppC proteins . Indirect immunofluorescence double labeling. Spirochetes grown at 34°C to mid-logarithmic phase were placed on a 12-mm-diameter circular glass slide, fixed with 100% methanol, and air dried . Slides were washed three times in phosphate-buffered saline (PBS)-0.2% bovine serum albumin plus 0.02% goat serum (Sigma) . Each slide was then incubated for 1 h at room temperature with MAb B11, which is specific for ErpA/I/N, immediately followed by incubation for 1 h with a polyclonal antibody specific for ErpB/J/O, ErpG, ErpK, ErpL, ErpM, ErpP, ErpX, or ErpY . After extensive washes, slides were incubated for 1 h at room temperature with a 1:1,000 dilution of Alexa Fluor 488-labeled goat anti-mouse immunglobulin G (IgG), followed by incubation of a 1:1,000 dilution of Alexa Fluor 568-labeled goat anti-rabbit IgG (Molecular Probes, Eugene, Oreg.) (10, 16, 25, 29) . Slides were washed three times in PBS and visualized with a Spot Digital Camera and an Axiophote epifluorescence microscope (Zeiss, Hallbergmoos, Germany) . Each experiment was repeated three times, and as control experiments, bacteria were treated as described above without the incubation of the secondary antibody or with the secondary antibody in the absence of the primary antibody . Chloroquine agarose gel electrophoresis and Southern blot analysis. DNA from B . burgdorferi grown at either 23°C or at 23 shifted to 34°C was purified as previously described (39) . Three hundred nanograms of each DNA was heated to 60°C in 1% N-lauroylsarcosine, 10 mM EDTA, 3% Ficoll 400, 0.05 mg of bromphenol blue/ml, and 0.05 mg of xylene cyanol/ml for 2 min; cooled briefly (39); and separated by electrophoresis in a 0.35% agarose gel containing a chloroquine concentration of either 0, 3, 9, or 12 µg/ml (4) . Electrophoresis was performed in 0.5x Tris-borate-EDTA buffer (1x Tris-borate-EDTA has 0.089 M Tris [pH 8.0], 0.089 M boric acid, and 0.002 M EDTA) containing the same chloroquine concentration . DNA from each gel was transferred to a Biotrans nylon membrane (ICN, Irvine, Calif.) . The experiment was repeated twice, and filter contents were incubated overnight at 55°C with a radiolabeled probe in 6x SSC (1x SSC is 0.15 M NaCl plus 0.015 M sodium citrate) (pH 7.0)-0.1% SDS-5 g of nonfat dried milk per liter (26) . The membranes were washed once for 20 min and four times for 10 min with 0.2x SSC-0.1% SDS at 55°C . Labeled DNA was visualized using a STORM 860 Phosphor Imager (Molecular Dynamics, Sunnyvale, Calif.)
Probes were produced by PCR using oligonucleotides listed in Table 1, and as template a plasmid containing the appropriate regions of DNA was used . Probe 1 was derived from the ORFC-ORF3 region of cp32-1 and is specific for that plasmid (15) . Probe 2 was derived from the promoter region of the erpK gene, a region of DNA that is very well conserved in every erp locus, and thus recognizes all cp32 plasmids (26) . Probe 3 was derived from the ospC promoter region encoded on cp26 and is specific for that plasmid (6) . PCR conditions for probe production consisted of 25 cycles at 94°C for 1 min, 50°C for 30 s, and 72°C for 1 min . The reaction product was diluted 100-fold in water, subjected to a second round of PCR, and purified in a Centricon-100 (Amicon, Beverly, Mass.) . PCR products were examined by agarose gel electrophoresis to ensure that amplification yielded only the appropriate single product (26) . Probes were then labeled with [
Effects of coumermycin A1 on protein expression. Coumermycin A1 (Sigma) was added to cultures of B . burgdorferi grown at 34°C to the following final concentration: 0, 0.001, 0.003, 0.01, 0.03 or 0.1 µg/ml (39) . After either 30 min, 4 h, or 4 days of incubation at 34°C, cells were harvested by centrifugation, washed twice in PBS, resuspended in sample buffer, and lysed by boiling for 3 min . Aliquots (5 µg/ml) of each lysate were analyzed by SDS-PAGE and were immunoblotted with MAb B11 (anti-ErpA/I/N), MAb B5 (anti-OspC), and anti-FlaB MAb . Bacterial fractionation with Triton X-114. Bacteria were grown to a final concentration of approximately 108 organisms per ml . Bacterial extraction and phase partition were performed using the mild nonionic detergent Triton X-114 (9) . Methanol-chloroform precipitation was used to remove detergent contaminants prior to SDS-PAGE (35) . The experiment was repeated twice, and control membrane filters were incubated with MAb B11, directed against the outer membrane ErpA/I/N protein, and MAb H9724, directed against the periplasmic flagella (8, 25) . In situ protease analysis. Protease sensitivity assays were performed as previously described (10, 25) . Briefly, B . burgdorferi was pelleted by centrifugation, followed by resuspension in PBS . Bacteria were then incubated at room temperature in PBS containing either 40 µg of proteinase K (Sigma)/ml or 0.05 µg of pronase (Boehringer Mannheim, Indianapolis, Ind.)/ml for 30 min or 1 or 2 h . The activity of either protease was inhibited after each time point by addition of 10 µl of inhibitor cocktail, which consisted of 0.8 mM PefaBloc SC (Boehringer Mannheim), 10 mM phenylmethylsulfonyl fluoride (Sigma), and 0.5 mM EDTA . Cells were harvested by centrifugation, washed twice in PBS, resuspended in sample buffer, and lysed by boiling for 3 min . Aliquots (15 µg/ml) of each lysate were analyzed by SDS-PAGE and immunoblotted with polyclonal antiserum directed against BppC . The experiment was repeated twice, and control aliquots of bacteria were incubated in buffer for 2 h at room temperatures, without added protease, followed by the addition of inhibitors, sample buffer, and boiling as for protease-treated bacteria . Induction of cp32-encoded bacteriophage. This procedure was performed as previously described (24) . Briefly, bacteria were grown to mid-logarithmic phase, pelleted, and then resuspended to the original culture volume in fresh medium . The culture was divided into two equal aliquots . To one aliquot, N-methyl-N'-nitro-N-nitrosoguanidine (MNNG) was added to a concentration of 10 µg/ml . Both the treated and untreated cultures were incubated at 34°C for 2 h . The cultures were centrifuged and resuspended in an equal volume of fresh BSK-II medium, followed by incubation for 60 h at 34°C . After the cells had recovered, bacteria were harvested by centrifugation, washed twice in PBS, and lysed by boiling . Lysates of both untreated and treated cells were separated by SDS-PAGE . One gel was stained with Coomassie brilliant blue to ensure equal loading of total proteins . The other gel was immunoblotted with either MAb B11 or a polyclonal antiserum directed against either BppA or BppC .
Supercoiling state of DNA from cultures grown at 23 and 34°C. It has been suggested that the differences in erp expression levels at different temperatures are due to plasmid supercoiling (39) . For that purpose, DNA from bacteria grown at 23°C and from those grown at 34°C was purified and analyzed by electrophoresis in chloroquine-agarose gels followed by Southern blotting . Different concentrations of chloroquine, a DNA intercalator, were added to each gel, as this unwinds the double helix and slows down the migration of negatively supercoiled circular DNA (4, 20, 31, 37, 39) . Neither the cp32-1-specific probe 1 nor the generic cp32-labeling probe 2 detected any differences in the migration pattern of supercoiled plasmid DNA extracted from cultures grown at 23°C or from cultures shifted from 23 to 34°C (Fig . 2) .
Effects of coumermycin A1 on protein expression. Previous studies have shown that the antibiotic coumermycin A1 induces relaxation of DNA supercoiling in B . burgdorferi via inhibition of DNA gyrase (21, 39) . With this in mind, we further investigated the effect of this drug on erp expression . However, we observed constant expression levels of ErpA/I/N, regardless of the concentration of the antibiotic used (Fig . 3) . In addition, bacteria did not exhibit alteration in expression of the circular plasmid-encoded OspC protein either .
Prior to these studies, nothing was known about these three proteins . Our interest in learning more about them increased greatly as a consequence of the differences in expression regulation detected between them and the Erp proteins . Recent studies have shown that the cp32 plasmids may be packaged into bacteriophage-like particles (23, 24) . These plasmids also encode proteins that exhibit holin-like functions (17) . In addition, BLAST-P analysis suggested that a domain of BppC is homologous to that of bacteriophage integrases (data not shown) . With this mind, we added the bacteriophage-inducing agent MNNG (23, 24) to growing spirochetes . However, immunoblot analyses did not reveal any detectable differences in Erp, BppA, or BppC protein expression levels as results of this treatment (Fig . 5), suggesting that neither protein is involved with production of bacteriophage particles . We further examined the BppA, BppB, and BppC proteins by determining their cellular localization within B . burgdorferi. After Triton X-114 extraction, BppA and BppB were found in the aqueous phase (Fig . 6), suggesting that they are periplasmic proteins . BppC was found in the Triton X-114 detergent phase, suggesting that it is located in a bacterial membrane . Control experiments with MAbs directed against FlaB and ErpA/I/N indicated that these proteins are located with the insoluble pellet protoplasmic cylinder and detergent (membrane) fraction, respectively, as expected .
As a final step in characterizing BppA, BppB, and BppC, we examined whether they are produced by B . burgdorferi during mammalian infection . Sera collected from mice infected with B . burgdorferi contained antibodies directed against all three proteins: 54% recognized BppA recombinant protein, 20% recognized BppB, and 64% recognized BppC (data not shown) . Similarly, all Erp proteins are also produced during mammalian infection (47) .
However, there were occasions when it appeared that a small percentage of the bacteria in a population was not expressing both tested Erp proteins . Similar results were reported previously (29), leading to a suggestion that synthesis of some Erp proteins may be regulated by additional factors . However, our studies indicate that inability to detect an Erp protein by IFA can be a result of differences in concentrations of the antisera used . MAb B11, directed against ErpA/I/N, appeared to contain a higher titer of antibodies than did the polyclonal antisera . As would be expected, serial dilution of MAb B11 significantly weakened its signal to the point at which an IFA signal was undetectable . Furthermore, as the signal from MAb B11 weakened, the signal from the polyclonal antiserum increased . Use of diluted MAb B11 resulted in double-labeling IFA of all tested bacteria . These results indicate that (i) dilute antibody preparations exhibit weak IFA signals and that (ii) antibody preparations with a high titer can mask IFA signals from antisera with a weak titer . We conclude that incomplete double labeling was due to antibody titers, not to the inability of the bacteria to simultaneously coexpress all Erp proteins . It has also been suggested that the temperature-mediated effects on circular plasmid-encoded genes are due to changes in DNA supercoiling (39) . DNA supercoiling is used as a sensor for environmental changes for many pathogenic and nonpathogenic organisms (4, 20, 28, 31, 37) . Raising the culture's temperature can induce a reduction in DNA twists, while changing to a lower temperature may increase the number of DNA twists (28, 37) . However, our studies detected no differences in supercoiled DNA migration pattern from cultures grown at 23 or 34°C . The similarities in supercoiling were perhaps to be expected, since bacteria were cultured for 2 or 3 days following temperature shift, ample time for the bacteria to adjust any immediate supercoiling changes (41, 45) . In addition, if the temperature-related differences in erp gene regulation are caused by changes in supercoiling, inhibition of DNA gyrase activity with coumermycin A1 should alter the expression levels of Erp proteins and of other circular plasmid-encoded proteins . Yet our studies demonstrated that inhibiting this enzyme did not cause any detectable differences in protein expression levels . Thus, we conclude that the effect of temperature on Erp expression is not significantly due to changes in DNA supercoiling . While size of the plasmids, chloroquine concentrations used, or other factors may have influenced the results described above, we expected that other cp32-encoded proteins would be regulated similarly if expression of such genes is regulated through DNA supercoiling . For this reason, we examined the expression patterns of three proteins encoded by genes adjacent to the erp loci, BppA, BppB, and BppC . Expression of these proteins appears to be regulated by mechanisms independent of those controlling Erp synthesis, since the expression levels of all four protein types were influenced differently by environmental factors . The unique expression pattern of BppA, BppB, and BppC led us to characterize these proteins further . Immunoblot analyses of Triton X-114 fractions indicated that both BppA and BppB are soluble proteins . BppC was found in the bacterial outer membrane, while the protease sensitivity assay suggested that BppC is not surface exposed . Previous studies (13) observed that the pH of the culture medium caused differential expression of many membrane proteins . One unidentified protein with an apparent molecular mass of 34 kDa showed increased expression in alkaline conditions (13) . Based on the size, predicted pI, and expression profile, this protein could be the 32-kDa membrane protein BppC . Additionally, the BppA, BppB, and BppC proteins are all produced by B . burgdorferi during mammalian infection, as sera from infected mice contained antibodies directed against each protein . Continued characterization of these proteins will shed additional light on the function of these proteins and their roles in B . burgdorferi biology . Several mechanisms appear to be involved in the regulation of Erp protein expression by B . burgdorferi, including responses to temperature and undetermined soluble chemicals in the environment (1, 6, 45) . Results of the present studies expanded on these earlier conclusions . All Erp proteins were demonstrated to be simultaneously expressed by individual bacteria . Culture temperature change did not detectably change the topology of the plasmid DNA, and inhibition of DNA gyrase did not influence Erp expression . Additionally, we found that mechanisms altering expression of the Erp proteins were locus specific and did not influence proteins encoded by nearby loci . These data strengthen the hypothesis that all erp genes are similarly regulated and produced by B . burgdorferi at the same point(s) in the spirochete's vertebrate-tick infectious cycle . As most, if not all, Erp proteins bind host complement regulatory factor H (30, 44), such coexpression is to be expected for the survival of these bacteria in nature . Further studies of the Erp and other cp32 phage-encoded proteins will continue to increase understanding of the regulatory mechanisms controlling protein synthesis and function in B . burgdorferi .
We thank Don Cohen for technical assistance with epifluorescence microscopy; Karl Drlica, Waimun Huang, and Scott Samuels for constructive comments concerning DNA supercoiling techniques; Tom Schwan for providing MAb H9724; and Kelly Babb, Melissa Hines, Natalie Mickelsen, Jennifer Miller, and Julie Stewart for technical assistance, helpful comments on experimental procedures, and comments on the manuscript .
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