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Scientific
Publications - Work Done by Microbiology Reader Bioscreen C
Molecular
Microbiology, 1999, Jul, 33(2), 363-376
A mutation in Saccharomyces cerevisiae adenylate cyclase, Cyr1K1876M, specifically affects glucose- and acidification-induced cAMP signalling and
not the basal cAMP level
|
| Mieke Vanhalewyn
1 , Françoise Dumortier
1 , Gilda Debast
1 , Sonia Colombo
1,
2 , Pingsheng Ma
1 , Joris Winderickx
1 , Patrick Van Dijck
2 & Johan M. Thevelein
1 |
| ABSTRACT
In the yeast Saccharomyces cerevisiae, the addition of glucose to
derepressed cells and intracellular acidification trigger a rapid increase
in the cAMP level within 1 min. We have identified a mutation in the genetic
background of several related 'wild-type' laboratory yeast strains (e.g.
ENY.cat80-7A, CEN.PK2-1C) that largely prevents both cAMP responses, and we
have called it lcr1 (for lack of cAMP responses).
Subsequent analysis showed that lcr1 was allelic to CYR1/CDC35,
encoding adenylate cyclase, and that it contained an A to T substitution at
position 5627. This corresponds to a K1876M substitution near the end of the
catalytic domain in adenylate cyclase. Introduction of the A5627T mutation
into the CYR1 gene of a W303-1A wild-type strain largely eliminated
glucose- and acidification-induced cAMP signalling and also the transient
cAMP increase that occurs in the lag phase of growth. Hence, lysine1876
of adenylate cyclase is essential for cAMP responses in vivo. Lysine1876
is conserved in Schizosaccharomyces pombe adenylate cyclase. Mn2+-dependent
adenylate cyclase activity in isolated plasma membranes of the cyr1
met1876 (lcr1) strain was similar to that in the isogenic
wild-type strain, but GTP/Mg2+-dependent activity was strongly
reduced, consistent with the absence of signalling through adenylate cyclase
in vivo. Glucose-induced activation of trehalase was reduced and
mobilization of trehalose and glycogen and loss of stress resistance were
delayed in the cyr1 met1876 (lcr1) mutant. During
exponential growth on glucose, there was little effect on these protein
kinase A (PKA) targets, indicating that the importance of glucose-induced
cAMP signalling is restricted to the transition from
gluconeogenic/respiratory to fermentative growth. Inhibition of growth by
weak acids was reduced, consistent with prevention of the intracellular
acidification effect on cAMP by the cyr1 met1876 (lcr1)
mutation. The mutation partially suppressed the effect of RAS2
val19 and GPA2 val132 on several PKA targets. These
results demonstrate the usefulness of the cyr1 met1876 (lcr1)
mutation for epistasis studies on the signalling function of the cAMP
pathway. |
| INTRODUCTION
|
| As in other eukaryotes, cAMP is synthesised by the
enzyme adenylate cyclase in the yeast Saccharomyces cerevisiae. It is
encoded by the CYR1/CDC35 gene (Matsumoto et al., 1984). The enzyme is 2026
amino acids long and is composed of an N-terminal inhibitory domain, a
leucine-rich repeat domain and a C-terminal catalytic domain (Kataoka et
al., 1985). It belongs to a family of adenylate and guanylate cyclases with
widespread occurrence (Danchin, 1993). Adenylate cyclase activity in
isolated plasma membranes of S. cerevisiae cells is largely GTP
independent when measured in the presence of Mn2+. When measured
in the presence of Mg2+, the activity is much lower but can be
stimulated severalfold by the addition of GppNHp, reflecting GTP/Mg2+-dependent
activity (Varimo and Londesborough, 1976). Extensive biochemical and
genetic evidence has shown that the yeast Ras1 and Ras2 proteins are
controlling elements of adenylate cyclase and that, in their absence, cAMP
synthesis in vivo is insufficient for viability (Toda et al., 1985;
Field et al., 1988). It has been proposed that the Ras proteins interact
with the N-terminal inhibitory domain of adenylate cyclase to relieve its
inhibition on the catalytic domain (Heideman et al., 1987). Other results
have implicated the C-terminal last 100 amino acid residues of adenylate
cyclase (Yamawaki-Kataoka et al., 1989) and a domain N-terminally adjacent
to the catalytic domain (Uno et al., 1987) as important for interaction with
Ras. The activity of the Ras proteins is controlled by the guanine
nucleotide exchange factor Cdc25 (Camonis et al., 1986) and the GTPase
activating proteins Ira1 (Tanaka et al., 1989) and Ira2 (Tanaka et al.,
1990). cAMP controls the activity of protein kinase A (PKA), of which the
catalytic subunits are encoded by the TPK1, TPK2 and TPK3 genes (Toda et
al., 1987a), and the regulatory subunits by the BCY1 gene (Toda et al.,
1987b).
Biochemical and genetic work has identified several targets of the cAMP
pathway. High activity of the pathway causes low levels of trehalose and
glycogen, low heat resistance and a reduced expression level of
'STRE'-controlled genes, such as CTT1 (catalase) and SSA3
(Hsp70). Low activity of the pathway causes the opposite phenotype (for
reviews, see Broach and Deschenes, 1990; Thevelein, 1992; 1994; Tatchell,
1993; Ruis and Schuller, 1995). This is particularly evident during
exponential growth on glucose, as trehalose and glycogen levels, heat
resistance and the expression of 'STRE'-controlled genes are low in this
condition in wild-type cells. There is considerable evidence that these PKA
targets are also controlled by one or more cAMP-independent pathways
(Belazzi et al., 1991; Hirimburegama et al., 1992; Durnez et al., 1994;
Pernambuco et al., 1996; Crauwels et al., 1997). Whether PKA is directly
involved in this alternative regulation is not clear. Several biochemical
targets of PKA control have been identified in yeast, e.g. trehalase (Uno et
al., 1983), fructose-1,6-bisphosphatase (Müller and Holzer, 1981), glycogen
phosphorylase (Lin et al., 1995) and phosphatidylserine synthase (Kinney and
Carman, 1988).
Only two triggers of the cAMP pathway are well established in yeast
(Thevelein, 1991). The addition of glucose to derepressed yeast cells, but
not to glucose-repressed cells, triggers a transient increase in the cAMP
level within 1 min (van der Plaat, 1974). Intracellular acidification
triggers an equally rapid but more pronounced and longer lasting increase in
the cAMP level (Caspani et al., 1985). Glucose does not act through an
intracellular acidification effect (Thevelein et al., 1987a). Both phenomena
of cAMP signalling are specifically controlled by the low-affinity Pde1
phosphodiesterase, as opposed to the basal cAMP level in the cells, which is
specifically controlled by the high-affinity Pde2 phosphodiesterase (Ma et
al., 1999). Recent work has also identified a transient lag phase-associated
increase in the basal cAMP level (Ma et al., 1997).
Although genetic evidence indicates an involvement of the Ras proteins as
signal transmitters for glucose- and intracellular acidification-induced
cAMP signalling (Mbonyi et al., 1988), recent work has shown that only
intracellular acidification enhances the GTP content on the Ras proteins.
The addition of glucose does not affect the ratio of GTP/GDP bound to the
Ras proteins (Colombo et al., 1998). On the other hand, the G-protein
encoded by the GPA2 gene (Nakafuku et al., 1988) is required for
glucose-induced but not for acidification-induced cAMP signalling (Colombo
et al., 1998). Recent work has also identified a protein, called Gpr1, with
structural and functional homology to G-protein-coupled receptors, of which
the C-terminus binds to Gpa2. Gpr1 is also required for glucose-induced
activation of cAMP synthesis, suggesting that glucose sensing for activation
of the cAMP pathway might be carried out by a G-protein-coupled receptor
system consisting of Gpr1-Gpa2 (Kraakman et al., 1999).
During our studies of the glucose-induced cAMP signal in glucose
repression mutants (Argüelles et al., 1990) and in hexokinase and
glucokinase deletion mutants in the same genetic background, we have
discovered that, in this background, a mutation was present that nearly
abolished both glucose- and acidification-induced cAMP signalling. These
strains were kindly provided by K. D. Entian (Frankfurt, Germany). The
corresponding wild-type strains containing this mutation had been used for
many years as wild-type laboratory strains, and one of these was used to
construct the CEN.PK series of wild-type strains (Randez-Gil et al., 1997).
In the present work, we have identified this mutation as a K1876M
substitution in adenylate cyclase. We show that the mutation does not reduce
the maximal Mn2+-dependent activity of the enzyme in vitro,
but rather affects its GTP/Mg2+-dependent activation. In vivo,
the K1876M mutation in adenylate cyclase affects all PKA targets
investigated, mainly during the transition from gluconeogenic/respirative to
fermentative growth.
FIGURES
Table 1 . Saccharomyces cerevisiae
strains used in this work (Thomas and Rothstein (1989)).
Fig. 1 . Intracellular
cAMP level as a function of time after the addition of 100 mM glucose (A and
C...
Fig. 2 . Intracellular
cAMP level after the addition of 2,4-dinitrophenol to cells of an lcr1
strain...
Fig. 3 . Intracellular
cAMP level as a function of time after the addition of 100 mM glucose (A) or
2...
Fig. 4 . Adenylate
cyclase activity measured in isolated plasma membranes of the wild-type
strain (W...
Fig. 5 .
Glucose-induced mobilization of trehalose (A) and glycogen (B) and
glucose-induced loss of ...
Fig. 6 . Growth and
glucose level in the medium (A), trehalose (B) and glycogen (C) content and
heat...
Fig. 7 . Growth on YPD
in the presence of acetic acid. Wild-type strain W303-1A (filled symbols),
is...
Fig. 8 . Suppression by
the cyr1 met1876 (lcr1) mutation of the effect of
Ras2val19 and Gpa2val132 on...
RESULTS
|
|
Discovery and segregation of the mutation
The addition of glucose to derepressed yeast cells triggers a rapid,
transient increase in the cAMP level within a few minutes (van der Plaat,
1974), while intracellular acidification, for instance by the addition of
protonophores, causes a much higher and longer lasting cAMP increase
(Caspani et al., 1985). For our studies of the mechanisms underlying these
agonist-induced cAMP increases, several mutant strains have kindly been
provided by K. D. Entian (Frankfurt, Germany). Remarkably, all strains
derived from a common genetic origin, including the 'wild-type' derivatives,
lacked the cAMP increase induced by both glucose and the protonophore
2,4-dinitrophenol. This is shown in Fig. 1A and B for the 'wild-type'
derivative ENY.cat80-7A. In the same figure, the glucose- and
acidification-induced cAMP responses in the wild-type strain SP1 are shown
for comparison. The mutation is apparently also present in a new standard
laboratory strain, CEN.PK2-1C, that has been derived from this background
(Randez-Gil et al., 1997). This strain also lacks glucose- and
acidification-induced cAMP responses (results not shown).
Two strains lacking the cAMP responses, ENY.cat80-7A and ENY.cat80-8A
were crossed with the SP1 wild-type strain. The diploid strains all showed
normal cAMP responses, indicating that the mutation(s) involved were
recessive (results not shown). Tetrad analysis of one of the diploid strains
showed, for four asci, a two-to-two segregation of the mutant and wild-type
phenotype, indicating that only one mutation was involved (results not
shown). The glucose- and acidification-induced cAMP responses co-segregated.
The mutation causing absence of the cAMP responses was called lcr1,
for 'lack of cAMP responses'. |
|
Genomic mapping of the mutation
Further analysis of the phenotype of the lcr1 strains revealed
that they displayed a reduced rate of 2,4-dinitrophenol-induced trehalose
mobilization (results not shown). However, using this phenotype in a
microtitre plate-based screen, we were unable to isolate a complementing
clone from a yeast genomic library. Therefore, we decided to map the
mutation in order to associate it with a known gene or to use chromosome
walking in case of an unknown gene. An lcr1 mutant strain was crossed
with a set of mapping strains obtained from the Yeast Genetic Stock Center
(see Experimental procedures). Measurement of the
2,4-dinitrophenol-induced cAMP response in the segregants indicated a clear
two-to-two segregation in all cases. Moreover, in all crosses in which a
centromere-linked marker gene (ade1, trp1, leu1,
leu2, pet8) was involved, the number of tetratype tetrads was
reduced, indicating centromere linkage of the lcr1 mutation. In
addition, the results of a cross with an ilv3-containing strain
indicated linkage between lcr1 and ilv3 (10 cM). The ILV3
gene is located on chromosome X, and the CYR1 gene, encoding
adenylate cyclase, is located close to the centromere of chromosome X.
Therefore, we investigated whether lcr1 could be allelic with CYR1. |
|
The lcr1 mutation is allelic with CYR1
We crossed an lcr1 strain with a strain containing the
temperature-sensitive cdc35-10 allele and examined the progeny for
absence of cAMP signalling (presence of lcr1) and for thermosensitive
growth (presence of cdc35-10). All 10 tetrads investigated were
parental ditype, indicating allelism or very close linkage. Further support
that lcr1 and CYR1 were allelic was obtained by
complementation of an lcr1 mutant (strain MV7117C) with a plasmid
containing the wild-type CYR1 gene. With both an episomal plasmid
(pYACE1) (results not shown) and a centromeric plasmid (YCplac33YACE1) (Fig.
1C and D) containing the wild-type CYR1 gene, the glucose- and
acidification-induced cAMP responses were restored. Subsequently, we
measured the cAMP responses in a diploid lcr1/cdc35-10 strain
(MV7143) at the permissive (24°C) and restrictive (37°C) temperatures for
the cdc35-10 mutation. At 37°C, cAMP signalling was largely absent
compared with 24°C, indicating that lcr1 was allelic with CYR1
(results not shown). |
|
A Ty element in the promoter of the lcr1
allele is not responsible for the absence of the cAMP responses
Southern blot analysis with EcoRI-digested DNA of the four strains
in a tetrad (strains MV7117A-D) showed that the lcr1 descendants had
a different restriction pattern compared with the CYR1 descendants.
Instead of a single 3.5 kb band in the wild-type strains, two bands of 3 kb
and 8 kb were observed (using a 2.6 kb SphI-EcoRI probe,
covering part of the promoter and a 405 bp-long initial part of the
wild-type CYR1 gene). Southern blot analysis of the parental strains
(SP1, ENY.cat80-7A and ENY.cat80-8A) and the descendants of another tetrad
(strains MV7106A-D) confirmed that this aberrant restriction pattern was
linked with the lcr1 mutation (results not shown). Based on this
result and on additional results obtained with other restriction enzymes and
other probes (not shown), we concluded that an insertion of unknown length
was present 5' upstream of the PvuII site (position
142)
in the promoter of the lcr1 mutant allele. We cloned the promoter
with the unknown insert from an lcr1 mutant strain using plasmid
eviction (see Experimental procedures). Sequence analysis showed that
the insertion was a Ty transposable element (Boeke and Sandmeyer, 1991) and
that it ended at position 555 in the promoter of the lcr1 mutant allele
(results not shown). Two previous reports have dealt with the insertion of a
Ty element into the promoter and into the regions 4 to +82 and +124 to +268
of the CYR1 gene (Iida, 1988; Lenzen et al., 1987, respectively). In the
latter case, it caused a strong reduction in adenylate cyclase activity,
slow growth and a multistress-resistant phenotype.
To check whether the presence of the Ty element in the promoter was
responsible for the absence of the cAMP responses, for instance by reducing
the transcription of the CYR1 gene, we inserted an integrating
plasmid of the YIplac series (see Experimental procedures) at
different positions upstream of the start codon. Insertion at positions
1790,
1590,
840
and
526
(results not shown) did not affect the acidification-induced cAMP increase.
As the Ty transposon ended at position
555,
this made it unlikely that it was responsible for the absence of the cAMP
responses. |
|
Construction of chimeric genes indicates that a
mutation located in the 3'-third of the lcr1 allele is responsible
for the phenotype
To investigate which part of the lcr1 mutant allele was
responsible for the absence of the cAMP responses, we constructed chimeric
genes consisting of three different fragments derived from the wild-type
CYR1 gene (designated W for wild type) or the lcr1 mutant allele
(designated M for mutant). The fragments (positions in brackets) were SphI
(in MCS of pUC19*)-Asp718 (120), Asp718 (120)-NcoI
(4823) and NcoI (4823)-BamHI (6534). The first fragment
contained about 1.3 kb of the promoter, including part of the Ty transposon
in the case of the lcr1 mutant gene. The last fragment contained
about 0.45 kb of the terminator. (For the construction of these plasmids,
Experimental procedures.) The eight possible combinations of chimeric
genes were introduced on a centromeric plasmid (designated pWWW, pMMM, pWWM,
pWMW, pMWW, pWMM, pMWM, pMMW) into an lcr1 strain (MV7117C).
Measurement of the 2,4-dinitrophenol-induced cAMP increase in these
transformants clearly indicated that the mutation responsible for the
absence of the cAMP responses was located in the C-terminal part of the
protein (Fig. 2). Moreover, the presence of the 5' lcr1 fragment,
which contained part of the Ty transposon, also resulted in normal cAMP
responses when a wild-type 3'-terminal fragment was present. This confirmed
that the Ty transposon was not responsible for the absence of the cAMP
responses. |
|
Identification of the mutation as a A5627T
substitution
Sequencing of the 3'-terminal fragment revealed a substitution of adenine
for thymine at position 5627. Sequencing of the other two fragments
confirmed that there was no mutation present. The A5627T mutation was
confirmed in all lcr1 derivatives and the wild-type adenine
nucleotide in all wild-type derivatives of the following tetrads: 7117A-D,
7103A-D and 7106A-D. DNA sequence analysis of the area around nucleotide
5627 in four of the chimeric constructs showed that the WWW construct
contained an adenine at position 5627, whereas the MMM, WWM and WMM
constructs contained a thymine at this position.
The A5627T mutation causes a substitution in adenylate cyclase of lysine
at position 1876 for methionine. This amino acid is located near the end of
the catalytic domain (Kataoka et al., 1985) and could therefore have
an important influence on the activity of the enzyme. Interestingly,
however, the mutation does not affect Mn2+-dependent adenylate
cyclase activity but strongly reduces GTP/Mg2+-dependent
activity. |
|
Introduction of the A5627T mutation into a
wild-type strain, cAMP responses in vivo and adenylate cyclase
activity in vitro
We have introduced the A5627T mutation in the CYR1 gene of the
wild-type strain W303-1A by replacement of the C-terminal third of the
wild-type gene by the corresponding part of the cyr1 met1876
(lcr1) allele (see Experimental procedures). The presence of
only the A5627T mutation in the CYR1 gene of the W303-1A strain was
confirmed by sequencing. The resulting strain GD1 lacked both the glucose-
and acidification-induced cAMP responses, although a small increase was
still observed with glucose (Fig. 3A and B). During the investigation of
cAMP responses in the original and tetrad-derived lcr1 strains,
similar small increases in the cAMP level after the addition of glucose were
occasionally observed in some strains (results not shown). These results
indicated that the K1876M mutation in adenylate cyclase is able to largely
eliminate the cAMP responses by itself. Given the previous results that
linked this phenotype to the C-terminal third of adenylate cyclase, it shows
that the K1876M mutation alone is responsible for the elimination of the
cAMP responses in the lcr1 mutant strains.
Determination of adenylate cyclase activity in isolated plasma membranes
of the W303-1A wild-type strain and the isogenic cyr1 met1876
(lcr1) mutant strain GD1 showed that, in the latter strain, Mn2+-dependent
activity was similar to that in the wild-type strain, but Gpp(NH)p/Mg2+-
and Mg2+-dependent activity were strongly reduced (Fig. 4). This
was true for the three different growth conditions used. This indicates that
the absence of the agonist-induced cAMP responses is not caused by a general
reduction in adenylate cyclase activity, but by a specific change in
responsiveness of the adenylate cyclase to agonist stimulation. Gpp(NH)p/Mg2+-
and Mg2+-dependent activity are a measure, respectively, of
maximal and basal stimulation of adenylate cyclase by GTP-dependent
G-proteins. |
|
Phenotype of a strain lacking the glucose- and
acidification-induced cAMP responses
Two isogenic strains, W303-1A and GD1, were now available that allowed us
to investigate (without side-effects possibly caused by mixed genetic
backgrounds, the presence of suppressor mutations or multicopy suppressor
genes) the physiological relevance of agonist-induced cAMP signalling.
Glucose- and intracellular acidification-triggered activation of trehalase
are considered to be mediated by the cAMP increases caused by these agonists
(Thevelein, 1991). In both cases, the extent of trehalase activation was
reduced in the cyr1 met1876 (lcr1) mutant (Fig. 3C
and D). It was not abolished, indicating the involvement of additional
factors or the presence of undetected local cAMP increases. Recently, we
have shown that the lag phase of growth in yeast is associated with a
transient increase in the basal cAMP level. Also, this transient cAMP
increase was abolished in the cyr1 met1876 (lcr1)
mutant (Fig. 3E). This might be the reason for the slightly longer lag phase
of the mutant. In addition to the rapid mobilization of trehalose, triggered
by the activation of trehalase, mobilization of glycogen and rapid loss of
stress resistance are also important characteristics of the adaptation from
gluconeogenic/respirative growth to fermentative growth. These effects are
also thought to be mediated by a cAMP-triggered protein phosphorylation
cascade that occurs after the addition of glucose (Thevelein, 1988). We now
show that, for each of these three characteristics, a significant delay
occurs in the cyr1 met1876 (lcr1) mutant (Fig. 5). This is consistent with a
role for glucose-induced cAMP signalling in the stimulation of the
transition to fermentative growth.
Growth of the isogenic strains W303-1A and GD1 on different carbon
sources showed a slightly, but reproducibly longer lag phase and higher
final cell density on rapidly fermented sugars for the cyr1
met1876 (lcr1) mutant (glucose: Fig. 6A; fructose: results not
shown) and a slightly shorter lag phase and lower final cell density on
non-fermentable carbon sources (glycerol, ethanol: results not shown). On
galactose, there was no difference between the two strains. These results
would be consistent with a stimulatory role for glucose-induced cAMP
signalling in the initiation of fermentative growth. Although the difference
under our growth conditions was small (e.g. Fig. 6A), it cannot be excluded
that, under certain conditions in the natural environment, this difference
would be more pronounced and of selective advantage. The slightly longer lag
phase of the cyr1 met1876 (lcr1) mutant correlated
with a slightly slower consumption of glucose in the medium (Fig. 6A).
It is also well known that, during diauxic growth of yeast cells on
glucose, a general fluctuation occurs in PKA-controlled properties. The
trehalose and glycogen content and heat resistance drop during the
initiation of fermentative growth to reach a minimum during mid-exponential
phase, after which they increase again to reach a maximum during growth on
ethanol and the subsequent stationary phase (for reviews, see Broach and
Deschenes, 1990; Thevelein, 1992; 1994). Figure 6B-D shows that the initial
and final levels of trehalose, glycogen and heat resistance were elevated in
the cyr1 met1876 (lcr1) mutant, while the
difference between the two strains was small at early/mid-exponential phase.
More important, however, is the observation that, in the strain lacking
glucose-induced cAMP signalling, the general fluctuation pattern in the
three parameters during diauxic growth was not fundamentally affected. It
was even more pronounced in the mutant than in the wild type. This indicates
that glucose-induced cAMP signalling is not responsible for this general
fluctuation in PKA-controlled properties.
The physiological function of the strong stimulating effect of
intracellular acidification on the cAMP level is not clear. We found that
growth inhibition by the weak acid preservative sorbic acid (results not
shown) and by acetic acid (Fig. 7) is significantly reduced in the cyr1
met1876 (lcr1) mutant. The mutant showed better growth in
the presence of these inhibitors than the wild-type strain. This suggests
that at least part of the inhibition results from overstimulation of cAMP
accumulation by the intracellular acidification effect. As recent evidence
has suggested that sorbic acid might not act as a classic weak acid
preservative (Stratford and Anslow, 1998), we also tested acetic acid.
However, the results obtained with sorbic acid and acetic acid were very
similar, except that sorbic acid was effective at about 60 times lower
concentrations. |
|
Suppression of Ras2val19 and Gpa2val132
by the cyr1met1876 (lcr1) mutation
Ras2val19 causes strong constitutive activation of the cAMP
pathway (Toda et al., 1985), and recent work has shown that the
dominant alleles Gpa2ala273 (Xue et al., 1998) and Gpa2val132
(Kraakman et al., 1999) also cause constitutively low stress
resistance, a well-known PKA-controlled property. We show that the cyr1
met1876 (lcr1) mutation partially suppresses the effect of
both Ras2val19 and Gpa2val132 for trehalose content,
glycogen content and heat resistance. This suppression was more pronounced
in cells grown in minimal medium (Fig. 8) compared with cells grown in rich
medium (results not shown). As opposed to the results for cells in rich
medium (Fig. 6), when the cells were grown in minimal medium to stationary
phase, the cyr1 met1876 (lcr1) mutant did not show
a higher final trehalose content and heat resistance than the wild-type
strain. Only the glycogen content was higher (Fig. 8). When the wild-type
strain was transformed with the RAS2 val19- or GPA2
val132-containing plasmid, a strong drop in trehalose and
glycogen content and in heat resistance was observed compared with the
wild-type strain with the empty plasmid (Fig. 8). On the other hand, in the
cyr1 met1876 (lcr1) mutant, the two alleles were
unable to lower trehalose and glycogen content or heat resistance (Fig. 8).
This indicates that the cyr1 met1876 (lcr1) allele
effectively counteracts the overactivating effect of RAS2 val19
or GPA2 val132. This result also supports the theory that
Gpa2 acts upstream of adenylate cyclase for cAMP signalling through the cAMP
pathway. Although direct activation of adenylate cyclase by Gpa2 is its most
likely mechanism of action based on the analogy with G-protein control of
mammalian adenylate cyclase, it has been difficult to establish this in
yeast because of the lethality caused by adenylate cyclase deletion and the
essential requirement of the Ras proteins for adenylate cyclase activity. |
|
DISCUSSION
|
|
The K1876M mutation in adenylate cyclase largely
abolishes agonist-induced cAMP signalling
Our results show that a K1876M mutation in adenylate cyclase largely
abolishes the cAMP responses in vivo upon addition of glucose or
intracellular acidification, without significantly reducing the basal cAMP
level measured in vivo. Also, the Mn2+-dependent activity
of adenylate cyclase in vitro is not significantly affected, whereas
GTP/Mg2+-dependent activity is strongly reduced. Hence, both
in vivo and in vitro data indicate that the cyr1
met1876 (lcr1) mutation does not cause a general non-specific
drop in the catalytic activity of adenylate cyclase, but rather that agonist
stimulation of adenylate cyclase is specifically absent in the mutant
enzyme. The most straightforward explanation of our observations is that the
mutation specifically affects the regulation of the enzyme by the proteins
responsible for agonist-induced activation. If this interpretation is
correct, the data would tend to indicate that, in the case of glucose
control and control by intracellular acidification, the proteins involved
act on a similar site of adenylate cyclase or that the lysine at position
1876 plays a key role in the subsequent response of the adenylate cyclase
catalytic domain to this interaction. This interpretation is supported by
the finding that the effect of both Ras2val19 and Gpa2val132
can be counteracted by the K1876M mutation. An alternative explanation is
that the K1876M mutation causes a conformation mimicking constitutive
feedback inhibition of adenylate cyclase by PKA. The enzyme is known to be
under strong feedback inhibition by PKA (Nikawa et al., 1987). The magnitude
and persistence of the glucose-induced cAMP signal correlate negatively with
PKA activity (Mbonyi et al., 1990), and high PKA activity abolishes both the
glucose- and the acidification-induced cAMP responses (Ma et al., 1999).
There are two arguments, however, against this alternative hypothesis. The
first is that strains with constitutively high PKA activity (caused by a
deletion of the BCY1-encoded regulatory subunit) have a lower cAMP
level than the basal level in the cyr1 met1876 (lcr1)
strains. The second is that the cyr1 met1876 (lcr1)
mutation does not cause a general reduction in catalytic activity of
adenylate cyclase but a reduction specifically in Mg2+/GTP-dependent
activity.
The catalytic domain of S. cerevisiae adenylate cyclase was
defined as residing approximately between amino acids 1609 and 1890 based on
the inability of truncated enzymes lacking residues more upstream of residue
1890 to complement a cyr1 mutant (Yamawaki-Kataoka et al., 1989).
Previously, other mutations have been identified in or near the catalytic
domain of adenylate cyclase. A mutation at position 1651 makes the catalytic
activity independent of Ras proteins and, at the same time, caused a
stronger stimulation by Ras (De Vendittis et al., 1986). A mutation at
position 1547 changes the specificity for Ras interaction (Marshall et al.,
1988). The catalytic domain of S. cerevisiae and Schizosaccharomyces pombe
adenylate cyclase show about 60% homology, while the rest of the enzyme is
less conserved (Yamawaki-Kataoka et al., 1989). Interestingly, the
lysine-1876 residue is conserved in S. pombe adenylate cyclase. It is
located in the most downstream domain conserved between S. cerevisiae and S.
pombe adenylate cyclase, which ends around residue 1890 (Yamawaki-Kataoka et
al., 1989). Hence, this last conserved domain could play an important role
in the regulation of adenylate cyclase. |
|
Physiological significance of agonist-induced cAMP
signalling
Up to now, it has been difficult to assess the physiological significance
of glucose-induced cAMP signalling because of the lack of strains that
specifically affected agonist-induced activation of cAMP synthesis rather
than the basal capacity of cAMP synthesis. The results with the cyr1
met1876 (lcr1) strain GD1 show that the absence of
glucose-induced cAMP signalling clearly affects the rapid changes in several
PKA targets that are associated with the transition from
gluconeogenic/respirative growth to fermentative growth. The activation of
trehalase was reduced. Mobilization of trehalose and glycogen and loss of
stress resistance were significantly delayed. These results support the
conclusion that glucose-induced cAMP signalling plays a role in stimulating
the adaptation to growth on glucose. They fit with the previous observations
that deletion of either Gpa2 or Gpr1, which are both required for
glucose-induced cAMP signalling, also delays glucose-induced changes in PKA
targets (Colombo et al., 1998; Kraakman et al., 1999).
The effect of the cyr1 met1876 (lcr1) mutation
was only quantitative and largely limited to the transition phase to
fermentative growth. During diauxic growth, there was only a little
difference from the wild-type strain. This fits with the presence of the
cyr1 met1876 (lcr1) mutation in laboratory strains
considered to be wild-type strains. The absence or, at least, the strong
reduction in glucose-induced cAMP signalling does not eliminate the
establishment of the typical PKA-controlled phenotype in glucose-growing
cells. Moreover, the typical fluctuation in these properties during diauxic
growth was even accentuated in the cyr1 met1876 (lcr1)
mutant. This indicates that glucose-induced cAMP signalling is not
responsible for the difference in these properties between cells growing on
glucose and cells deprived of glucose. This is in agreement with the
observation that, in gpa2
and gpr1
mutants also, the general fluctuation in PKA-controlled properties
during diauxic growth is still present (Colombo et al., 1998; Kraakman et
al., 1999). This conclusion also fits with the previous proposal that
another glucose-dependent pathway, called the fermentable growth
medium-induced (or FGM) pathway, is responsible for establishing the
striking differences in PKA-controlled properties (Thevelein, 1994).
The cyr1 met1876 (lcr1) strain GD1 also
displayed a small but reproducible increase in the length of the lag phase,
which might be related to the absence of the transient increase in the basal
cAMP level during the lag phase. This cAMP increase has only recently been
linked specifically to the lag phase of growth, whereas it was previously
considered to reflect the level of glucose in the medium (Ma et al., 1997).
It might play a role in stimulating exit from stationary phase. A possible
role of the cAMP pathway in outgrowth from stationary phase has been
suggested (Tatchell, 1993).
Up to now, the physiological significance of acidification-induced cAMP
signalling has been rather obscure. Its role might be limited to
carbon-starved cells that are known to consume storage carbohydrates (Lillie
and Pringle, 1980) and in which acidification is known to trigger the
mobilization of storage carbohydrates (Berke and Rothstein, 1957). In
carbon-starved cells of the cyr1 met1876 (lcr1)
mutant strains, 2,4-dinitrophenol-induced trehalose mobilization was
retarded compared with the wild-type strain, in agreement with a role for
the acidification-induced cAMP increase in the stimulation of trehalose
mobilization. Under the conditions of diauxic growth and absence of carbon
starvation, as performed in our experiments, the changes caused by the
cyr1 met1876 (lcr1) mutation in the PKA-controlled
properties probably resulted from the absence of glucose-induced rather than
acidification-induced cAMP signalling.
Our results show that the cyr1 met1876 (lcr1)
strain is more resistant to growth inhibition by the weak acid preservative
sorbic acid and by acetic acid. This supports the idea that, in vivo,
the cyr1 met1876 (lcr1) mutation prevents the toxic
effect caused by intracellular acidification to some extent. This result
indicates that stimulation of the cAMP pathway by intracellular
acidification is part of the mechanism responsible for growth inhibition by
sorbic acid in yeast. Although a recent report provided evidence that sorbic
acid does not inhibit yeast as a classic weak acid preservative (Stratford
and Anslow, 1998), the results that we obtained with sorbic acid and acetic
acid were very similar. |
|
The cyr1met1876 (lcr1)
allele as a tool for studying the signalling function of the cAMP pathway
The lethal phenotype of mutants in adenylate cyclase and other essential
components of the cAMP pathway has been very convenient for epistasis
studies on the position of the different components in the pathway. However,
there is more and more doubt as to whether the essential requirement of the
cAMP pathway reflects an essential requirement for cAMP signalling. Deletion
of Gpa2 or Gpr1, for instance, abolishes glucose-induced cAMP signalling but
is not lethal (Colombo et al., 1998; Kraakman et al., 1999). Hence,
epistasis studies based on the essential character of adenylate cyclase,
e.g. using the temperature-sensitive cdc35 mutants, could lead to
erroneous results with respect to the proper localization of non-essential
components of the cAMP pathway that are solely involved in cAMP signalling.
Our results show that the cyr1 met1876 (lcr1)
allele provides a convenient means of abolishing, or at least greatly
reducing, cAMP signalling without causing lethality. The constitutive
signalling effects of both Ras2val19 and Gpa2val132
are partially suppressed by the cyr1 met1876 (lcr1)
mutation, indicating that both of them act upstream of adenylate cyclase. At
present, it is unclear what part of adenylate cyclase interacts with Gpa2.
Our results are in agreement with at least partial overlap between the sites
interacting with Ras and Gpa2, as the cyr1 met1876 (lcr1)
mutation partially suppresses the effect of both constitutive alleles,
although alternative interpretations cannot be excluded at this moment. |
|
Conclusions
The lysine-1876 residue in S. cerevisiae adenylate cyclase is
essential for agonist-induced cAMP signalling in vivo. Mutation of
this residue does not reduce maximal adenylate cyclase activity in vitro,
but strongly reduces GTP-stimulated activity. This indicates that mutation
of the residue specifically prevents agonist-induced cAMP signalling through
an effect on G-protein activation of the enzyme rather than basal activity.
Elimination of glucose activation of cAMP synthesis in vivo by
introduction of the cyr1 met1876 (lcr1) mutation in
adenylate cyclase delays glucose-induced changes in PKA targets associated
with the adaptation to growth on glucose. However, it does not eliminate, or
even reduce, the typical variation in PKA-controlled phenotypic properties
during diauxic growth, which must, therefore, be caused by a cAMP
signalling-independent pathway. |
|
EXPERIMENTAL PROCEDURES
|
|
Strains and growth media
S. cerevisiae strains used in this study are shown in Table 1.
Tetrads MV7103A-D and MV7106A-D were derived from a cross between SP1 and
ENY.cat80-7A. Tetrad MV7117A-D was derived from a cross between SP1 and
MV7103B. The presence of the can1 marker was not checked in these
tetrads. MV7143 is a diploid strain obtained by crossing MV7117A and Be333.
Strains MV7159 and MV7161 were obtained by transformation of MV7117C and
MV7117D, respectively, with plasmid YCplac33YACE1. Strain GD1 was
constructed by insertion of the vector YIplac211(URA3) containing an
XbaI-BamHI fragment of the cyr1 met1876 (lcr1)
mutant allele and cut with ClaI into strain W303-1A. Subsequently,
the strain was plated on a 5-fluoro-orotic acid plate, and spontaneous ura
revertants were screened for the presence of the A5627T mutation in
the CYR1 gene.
Mapping strains obtained from the Yeast Genetic Stock Center were
X4119-19C, X4119-15D, STX145-13D, STX145-15D, STX66-4A, STX82-3A,
STX146-19A, STX153-10C, STX84-5 A, STX75-3C, STX147-9B, STX147-4C,
STX83-17D, X4120-19D, X4126-6D, STX77-6C, STX155-3C and STX155-9B.
Growth media were composed of 2% bacto peptone (2%), yeast extract (1%)
and 2% glucose (YPD) or 3% glycerol (YPGlycerol). Minimal media (SD) were as
specified by Sherman et al. (1986). They were used to determine
auxotrophic markers and to maintain plasmids in transformed strains. |
|
Plasmids
Plasmid pUC19* was constructed from pUC19 (Yanisch-Perron et al., 1985)
by deletion of the SacI-SmaI fragment of the multicloning site. Plasmid
pYACE1 (Feger et al., 1991) was kindly provided by O. Fasano (Palermo) and
contains the CYR1 gene on an 8.47 kb Sau3A-Sau3A fragment in plasmid YEp26
(Broach et al., 1979). Plasmids YCplac33, YIplac128, YIplac204 and YIplac211
have been described by Gietz and Sugino (1988). Plasmid YCplac33YACE1 was
constructed by insertion of the CYR1 gene on an 8.5 kb SphI-BamHI
fragment derived from pYACE1 into YCplac33.
The YCplac33 plasmids containing different chimeric constructs of the
wild-type CYR1 and lcr1 mutant allele were made by replacement
of the SphI-Asp718, Asp718-NcoI or NcoI-BamHI
fragment in the YCplac33YACE1 plasmid ('pWWW') by the corresponding
fragments obtained from parts of the lcr1 mutant allele cloned in the
vector YIplac211. These parts were a 5.2 kb SphI-PstI, a
4.9 kb PstI-NcoI and a 1.4 kb NcoI-SnaBI
fragment. They were recovered separately by plasmid eviction. The chimeric
constructs were first made in the pUC19* vector, cut out with SphI
and BamHI and cloned into the SphI-BamHI sites of the
multicloning site of vector YCplac33.
For insertion of a plasmid of the YIplac series at different positions in
the CYR1 promoter of the wild-type strain SP1, the following plasmids
were constructed and restriction sites used: YIplac211 + 2.2 kb HindIII-EcoRI
fragment of CYR1, HindIII ( 1790);
YIplac204 + 2 kb HincII-EcoRI fragment of CYR1, HincII
( 1590);
YIplac128 + 1.25 kb AccI-EcoRI fragment of CYR1, AccI
( 840);
and YIplac211 + 0.93 kb DraI-EcoRI fragment of CYR1,
DraI ( 526).
The RAS2 val19 allele (Toda et al., 1985) and
the GPA2 val132 allele (Kraakman et al., 1999) were
introduced into the wild-type strain W303-1A and the isogenic cyr1
met1876 (lcr1) mutant (GD1) on a YCplac33 plasmid (Gietz
and Sugino, 1988). The same strains transformed with the empty plasmid were
used as controls. |
|
Recombinant DNA methods and genetic analysis
Standard methods were used for transformation, DNA extraction,
restriction analysis, Southern blotting and polymerase chain reaction (PCR)
(Sambrook et al., 1989). DNA sequence analysis was performed according to
Sanger et al. (1977), using the T7 sequencing kit from Pharmacia. Tetrad
analysis was performed according to standard procedures (Sherman et al.,
1986). Cloning of the unknown insert in the CYR1 promoter of the
lcr1 mutant was performed using plasmid eviction. For this purpose, the
2.6 kb SphI-EcoRI fragment of the CYR1 promoter and
gene was introduced into the corresponding site in the YIplac211 vector and
integrated into an lcr1 strain (MV7117C) after linearization with
PstI. Genomic DNA of a positive transformant was cut with SphI,
and Southern blot analysis revealed a fragment of 9.5 kb. The DNA fragment
was ligated and transformed into Escherichia coli. After recovery of
the plasmids, a restriction map was made of the insert and used to obtain
subclones that were inserted into pUC19. |
|
Growth measurements and determination of heat
shock resistance
For comparison of the growth rate of W303-1A and GD1, stationary-phase
cultures were diluted 100-fold into YP medium with different carbon sources
as specified, and the OD600 was recorded with a turbidometric
analyser incubated at 30°C (Bioscreen; Labsystems). Two duplicates of three
independent cultures were measured simultaneously. Growth in the presence of
the weak acid preservative, sorbic acid, or in the presence of acetic acid
was measured in the same way in YPD medium. In this case, all growth curves
were determined with four replicate cultures. For determination of heat
shock resistance, 100 l
samples were taken from the culture at the indicated time points and heated
for 20 min at 51°C (or 15 min at 49°C in Fig. 7C). After cooling, aliquots
were spread on nutrient plates, and colonies were counted after 3 days of
growth at 30°C. |
|
Biochemical determinations
For determination of cAMP content, cells were grown on YPGlycerol until
exponential phase, harvested and resuspended in 25 mM Mes buffer (pH 6).
They were preincubated for 10 min before the addition of 100 mM glucose or
2 mM 2,4-dinitrophenol. Extraction and determination of cAMP were performed
as described previously (Thevelein et al., 1987b).
For trehalose and glycogen determination, cells were collected by
filtration, washed once with cold water, weighed and frozen in liquid
nitrogen. The pellets were resuspended in 0.5 ml of 0.25 M Na2CO3
per 50 mg of cells and boiled at 95°C for 20 min. Samples were taken for
trehalose determination, and the remainder was boiled for another 60 min.
The samples for trehalose determination were spun down, and 10 l
of the clear supernatant was used. The samples for glycogen determination
were mixed well and used directly (10 l).
All samples were neutralized by the addition of 5 l
of 1 N acetic acid. For trehalose determination, 5 l
of buffer (300 mM sodium acetate, 30 mM CaCl2, pH 5.4) and 20 l
of Humicola trehalase (360 U ml
1)
(Neves et al., 1994) were added and incubated for 45 min at 40°C. For
glycogen determination, 5 l
of buffer (400 mM sodium acetate, pH 4.7) and 20 l
of amyloglucosidase (0.25 U) from Aspergillus niger (Boehringer
Mannheim) were added and incubated for 2 h at 37°C. For all samples, the
glucose liberated was measured in 30 l
of cleared supernatant using the glucose oxidase/peroxidase method.
Adenylate cyclase activity was assayed in purified yeast plasma
membranes. Preparation of crude membranes was performed essentially as
described by Mintzer and Field (1995) with minor modifications. Adenylate
cyclase was assayed in a reaction mixture containing 20 mM Mes, pH 6.2,
0.1 mM MgCl2, 0.1 mM EGTA, 1 mM 2-mercaptoethanol, 0.25 mM IBMX,
0.1 mg ml
1
BSA, 0.25 mM cAMP, 1 mM [ -32P]-ATP
(final specific activity 100-150 c.p.m. pmol
1),
20 mM phosphocreatine, 0.25 mg ml
1
creatine phosphokinase, 0.1 mM dithiothreitol (DTT), in the presence of
2.5 mM MnCl2 or 2.5 mM MgCl2 or 2.5 mM MgCl2
and 100 M
Gpp(NH)p. The reaction was initiated by addition of the reaction mixture to
the membranes (20-60 g
of protein) in a final volume of 100 l.
The tubes were immediately transferred to a 30°C water bath and incubated
for 20 min. The reaction was stopped by the addition of 0.8 ml of 'stopping
solution' containing 10 mM Tris-HCl, pH 7.5, 0.175 mM cAMP, 5 mM ATP and
0.25% SDS. Cyclic [3H]-AMP ( 20 000
c.p.m.) was added to monitor sample recovery. [32P]-cAMP produced
was determined as described by Salomon et al. (1974) with minor
modifications.
Trehalase activity was determined in crude cell extracts as described
previously (Pernambuco et al., 1996). Glucose consumption in the
medium was measured by the glucose oxidase/peroxidase method. |
| |
| ACKNOWLEDGEMENTS |
We wish to thank Renata Wicik, Willy Verheyden and Sven Bogaerts for
excellent technical assistance, Filip Rolland for measuring the cAMP
responses in the CEN.PK2-1C strain, and K.-D. Entian (Frankfurt), E. Boles
(Düsseldorf) and O. Fasano (Palermo) for provision of yeast strains and
plasmids. This work was supported by a fellowship from the Fund for
Scientific Research
Flanders (Senior Research Assistant) to J.W. and by grants from the Fund for
Scientific Research
Flanders, the Research Fund of the Katholieke Universiteit Leuven (Concerted
Research Actions), the Flemish Ministry of Economy through the Institute for
Scientific and Technological Research (IWT) (project EUREKA EU/1434) and the
Flanders Interuniversity Institute for Biotechnology
VIB to J.M.T. |
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