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Free Online Full-text Article
Applied and Environmental Microbiology, November 1999, p.
4873-4880, Vol. 65, No. 11
Genetic Characterization of the Major Lactococcal Aromatic Aminotransferase and Its Involvement in Conversion of Amino Acids to Aroma Compounds
Liesbeth Rijnen,1 Sophie Bonneau,2 and
Mireille Yvon1,*
Unité de Recherches de Biochimie et Structure des Protéines1 and
Laboratoire de Génétique Microbienne,2 INRA, 78352 Jouy-en-Josas
Cedex, France
Received 25 January 1999/Accepted 17 August 1999
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ABSTRACT |
In lactococci, transamination is the first step of the enzymatic conversion
of aromatic and branched-chain amino acids to aroma compounds. In
previous work we purified and biochemically characterized the major
aromatic aminotransferase (AraT) of a Lactococcus lactis
subsp. cremoris strain. Here we characterized the
corresponding gene and evaluated the role of AraT in the biosynthesis
of amino acids and in the conversion of amino acids to aroma compounds.
Amino acid sequence homologies with other aminotransferases showed
that the enzyme belongs to a new subclass of the aminotransferase
I subfamily
;
AraT is the best-characterized representative of this new
aromatic-amino-acid-specific subclass. We demonstrated that AraT
plays a major role in the conversion of aromatic amino acids to aroma
compounds, since gene inactivation almost completely prevented the
degradation of these amino acids. It is also highly involved in
methionine and leucine conversion. AraT also has a major
physiological role in the biosynthesis of phenylalanine and tyrosine,
since gene inactivation weakly slowed down growth on medium without
phenylalanine and highly affected growth on every medium without
tyrosine. However, another biosynthesis aromatic aminotransferase is
induced in the absence of phenylalanine in the culture
medium.
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INTRODUCTION |
The enzymatic degradation of amino acids in cheese plays a major role in
cheese flavor development. Indeed, degradation products from
aromatic, branched-chain, and sulfurous amino acids have been
identified in various cheeses and highly contribute to their flavor (7,
12, 23, 26,
27) or to their off-flavor (10,
11, 18, 35). However,
the pathways of amino acid degradation in cheese microflora, and
especially in lactococci, which are widely used as starter cultures,
are still poorly understood. We previously found that in lactococci,
the first step in degradation of aromatic and branched-chain amino
acids is transamination (40), and this was
confirmed by Gao et al. (13). In a previous work,
we purified and biochemically characterized an aromatic aminotransferase
(AraT) from Lactococcus lactis subsp. cremoris NCDO763 (43)
that initiates the degradation of leucine, tyrosine, phenylalanine,
tryptophan, and methionine, all precursors of cheese flavor compounds.
Recently, a homologous enzyme was purified from a Lactococcus
lactis subsp. lactis strain (14). In the
course of the purification, it was estimated that AraT was
responsible for more than 93% of the phenylalanine aminotransferase
activity in the cell extract (CE) (43). Also, it
has been shown that phenylpyruvate formed from phenylalanine by
transamination was further degraded to the flavor compounds
phenyllactate and phenylacetate by lactococcal cells in vitro (43).
Recently, this degradation of phenylpyruvate to phenyllactate,
phenylacetate, and also to benzaldehyde in cheese was confirmed (44).
Thus, AraT seems to have a major role in the conversion of aromatic
amino acids to aroma metabolites by lactococcal cells and is also
involved in the degradation of leucine and methionine. However, the
real importance of this enzyme in amino acid degradation could only
be demonstrated by experiments with an araT mutant. In
previous work on AraT (43), we failed to conclude
anything about its precise physiological role. It was suggested only
that the enzyme is probably involved in both catabolism and
biosynthesis of aromatic amino acids, since generally in bacteria,
transamination of corresponding
-ketoacids
is the last step in biosynthesis of phenylalanine and tyrosine.
However, in several gram-negative bacteria, such as Pseudomonas
aeruginosa, this major biosynthesis pathway can be replaced by
another biosynthesis pathway via the conversion of prephenate in
arogenate by a prephenate aminotransferase. Arogenate is then
transformed to either phenylalanine or tyrosine by a cyclohexadienyl
dehydratase or a cyclohexadienyl dehydrogenase, respectively, which
are broad-specificity enzymes that also catalyze the transformation
of prephenate to the
-ketoacids
(phenylpyruvate and hydroxyphenylpyruvate) in the major biosynthesis
pathway (20, 21, 30,
31, 42). A third pathway for tyrosine
biosynthesis via hydroxylation of phenylalanine exists in P. aeruginosa,
but this pathway is rare in prokaryotes (38,
45). Finally, tryptophan is synthesized in
L. lactis by an alternative way, with the last step catalyzed by
a tryptophan synthase (3).
The aim of this work was to evaluate the role and importance of AraT in both
amino acid biosynthesis and conversion of amino acids to aroma
compounds. For this purpose, we characterized the gene encoding
lactococcal AraT and constructed an araT mutant. By
investigating the impact of gene inactivation on amino acid
degradation and on growth in different media, we demonstrated that
AraT is almost completely responsible for the degradation of aromatic
amino acids and is also highly involved in their biosynthesis.
However, another biosynthetic aromatic aminotransferase that is
induced by the absence of phenylalanine in culture media exists in
L. lactis.
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MATERIALS AND
METHODS |
Bacterial strains, plasmids, and growth conditions. The
bacterial strains and plasmids used in this study are listed in Table
1. L. lactis strains were grown either in M17 medium
(39) supplemented with 0.5% lactose or glucose or in a
chemically defined medium (CDM) (37) at 30°C.
Escherichia coli was grown in Luria-Bertani medium (34)
at 37°C with aeration. When needed, erythromycin (5 µg · ml 1
for L. lactis and 150 µg · ml 1
for E. coli) or ampicillin (50 µg · ml 1
for E. coli) was added to the culture medium.
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TABLE 1. Bacterial strains and plasmids |
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DNA techniques. All DNA manipulations were performed as
described by Sambrook et al. (34). DNA restriction and
modification enzymes were purchased from GIBCO-BRL (Cergy Pontoise,
France) and Eurogentec (Seraing, Belgium) and used as recommended by
the suppliers. The oligonucleotides were synthesized by
Eurogentec.
Electrocompetent L. lactis cells were prepared by the Holo and Nes
method (19), with minor modifications, and electrocompetent
E. coli cells were prepared and transformed as described by
Sambrook et al. (34).
Plasmid DNA was prepared with a plasmid purification kit from Qiagen Inc.
(Chatsworth, Calif.) for E. coli and by the method of
O'Sullivan and Klaenhammer for L. lactis (29).
Chromosomal DNA from L. lactis was prepared as previously
described (24, 34). RNA from
L. lactis was prepared by the method described by Glatron and
Rapoport (17).
Southern and Northern hybridizations were performed as described by Sambrook
et al. (34) and as described by the supplier of
the ECL kit (Amersham), respectively. A 1-kb PCR fragment obtained
with oligonucleotides 1 and 2 (see below) was used as a probe; it was
prepared with Ready to Go DNA Labeling Beads (without dCTP) from
Pharmacia Biotech and [ -32P]dCTP
(Amersham, Little Chalfont, Buckinghamshire, United Kingdom) for
Southern hybridization and with the ECL kit (Amersham) for Northern
hybridization.
PCR, cloning, and sequencing. PCR amplifications were
done on a Perkin-Elmer model 480 or 2400 DNA thermal cycler by using the
following cycling parameters. DNA denaturation was performed at 95°C
for 1 min, followed by annealing at 50°C for 1 min and amplification
at 72°C for 2 min, using Taq DNA polymerase (Appligene,
Illkirch, France). This cycle was performed 30 times before a final
amplification at 72°C for 10 min.
An araT fragment was amplified by PCR with two degenerated
oligonucleotides (oligonucleotide 1, 5'-CAR-TTY-GAY-CAR-CAR-GT;
oligonucleotide 2, 5'-TCN-CCR-TAY-TGN-CCR-AA, with Y being C, T; R
being A, G; and N being A, G, C, T) deduced from the N-terminal
sequence and an internal protein sequence of the purified enzyme (43).
The 1-kb fragment obtained was cloned into plasmid pTag to yield
pTIL200. The rest of the gene and its flanking regions were amplified
by inverse PCR with a religated EcoRV digest of chromosomal
DNA of L. lactis as a template and two primers chosen from the
previously sequenced 1-kb fragment (oligonucleotide 3, 5'-GCG-TAA-TTA-AAG-GCT-CAT;
oligonucleotide 4, 5'-GCA-CAG-ATT-ATT-AAG-ACG).
Sequencing was done at least twice for both strands, either on pTIL200 or on
amplified fragments extracted from 0.7% agarose with Spin-X (Costar,
Cambridge, United Kingdom). Samples for sequencing were prepared with
the Tag Dye Primer cycle sequencing kit or the PRISM Ready Reaction
Dye Deoxy terminator cycle sequencing kit (Applied Biosystems,
Warrington, United Kingdom). The sequences were determined on an
automatic DNA sequencer (model 370A; Applied Biosystems).
The DNA and protein sequences were analyzed with the GCG program (Genetics
Computer Group Inc., Madison, Wis.). Protein homology searches were
carried out with the BLAST network service (2).
Gene inactivation. The araT mutant was constructed
from L. lactis subsp. cremoris TIL46. The erythromycin resistance
gene of pIL253 (1.2-kb Sau3A fragment) was cloned into the
unique BamHI site of pTIL200 to yield pTIL212. Plasmid
pTIL212, which does not replicate in L. lactis, was integrated
into the chromosome by single crossover, yielding the mutant TIL313
with araT interrupted.
The regulation of the araT promoter was studied with L. lactis
subsp. lactis NCDO2118, which is more convenient than L. lactis
NCDO763 for regulation studies, since it has fewer amino acid
requirements and can grow in minimal media (8). Two mutants
were constructed in which the luxAB genes were placed under the
control of the araT promoter, one having araT interrupted
while in the other araT was still expressed (Fig.
1). For this purpose, the 359-bp EcoRI-HindII
and 739-bp HindII-HindIII fragments of araT,
containing the potential promoter region and a part of the coding
sequence of araT, respectively, were inserted into the
integrative transcriptional fusion vector pJIM2374. The fusion
vectors were integrated in the chromosome, yielding, respectively,
JIM5762 (Fig. 1B) with araT intact and JIM5929 (Fig.
1C) with araT interrupted, both with the
luxAB genes under the control of the araT promoter.

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FIG. 1. Schematic
representation of the constructions of mutants with the luxAB
genes as reporters under the control of the araT promoter. (A)
Chromosome region containing araT in the wild-type strain; (B)
construction with araT intact; (C) construction with araT
interrupted.
,
the region upstream of araT with two potential promoters and a
potential terminator just upstream.
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Final constructions were verified by PCR or sequencing of the modified region
or by Southern hybridization.
Luciferase assay. Luciferase assays were performed with
the fusion vector containing the promoter region of araT and mutants
JIM5762 and JIM5929. Luciferase activity was monitored during growth
by mixing 1 ml of culture with 5 µl of nonaldehyde and measuring the
light emission in a Bertold luminometer (33).
Values given in this work are those read on a curve (lux versus
optical density [OD]) at an OD of 0.5.
Determination of aminotransferase activity. Cells grown
to late log phase were harvested by centrifugation (10,000 × g for 10 min
at 4°C) and washed twice with 50 mM sodium
-glycerophosphate
buffer (pH 7.0). They were resuspended in 50 mM potassium phosphate
buffer (pH 7.5) containing 2 mM 2-mercaptoethanol, 1 mM EDTA, and
0.1 mM pyridoxal 5'-phosphate (Sigma Chemicals, St. Louis, Mo.) and
were disrupted with glass beads in a mini-beadbeater cell disrupter
three times for 1 min each time, with 1 min of cooling on ice after
each time. After centrifugation (14,000 × g for 20 min at
4°C), the supernatants were filtered through 0.45-µm-pore-size
filters (Millipore Co., Bedford, Mass.) and were considered CEs. The
protein concentrations of the CEs were determined by the Bradford
method (4) with the Coomassie protein assay reagent as
specified by Pierce Chemical Company (Rockford, Ill.), with bovine
serum albumin as the standard.
Amino acid aminotransferase activity in CEs was determined as previously
described (43). The reverse reaction was determined
by the same method, but the reaction was stopped by protein precipitation
with phosphoric acid at a final concentration of 0.1%. L-Glutamate
was measured after dilution with the sample buffer (pH 2.2; Biotronik,
Eppendorf, Maintal, Germany) by amino acid analysis with an LC3000
automatic analyzer (Biotronik), and
-ketoglutarate
was measured by high-performance liquid chromatography (HPLC) with an
ion exclusion column (IC-PAK; Waters) thermostated at 60°C, with 0.1%
phosphoric acid as the eluent at a flow rate of 0.8 ml min 1.
Data are means of activity determinations in extracts of cells from
three individual cultures.
Catabolism of amino acids. The catabolism of amino acids
by whole cells of L. lactis subsp. cremoris TIL46 was compared
with that by whole cells of its araT mutant, using
radiolabeled amino acids as a tracer (Isotopchim, Peyruis, France).
The following radiolabeled amino acids were used: L-[2,6-3H]phenylalanine
(60 Ci mmol 1),
L-[3,5-3H]tyrosine (60 Ci mmol 1),
L-[5-3H]tryptophan (20 Ci mmol 1),
L-[4,5-3H]leucine (60 Ci mmol 1),
L-[4,5-3H]isoleucine (89.6 Ci mmol 1),
L-[3,4-3H]valine (40 Ci mmol 1),
and L-[1-14C]methionine (55 mCi mmol 1).
The reaction mixture contained 100 mM Tris-HCl buffer (pH 8), a 2 mM
concentration of an unlabeled amino acid, a 0.05 µM concentration of
the same, labeled, amino acid, and 10 mM
-ketoglutarate.
A quantity of cells from a CDM culture corresponding to an OD at
480 nm (OD480) of 10 were added to 500 µl of reaction mixture
and incubated at 37°C. Aliquots of the reaction mixtures were
analyzed after 0, 10, 20, and 40 h by reverse-phase HPLC with both UV
(214 nm) and radioactivity detection as previously described (43,
44). Data are means of results obtained with cells from
at least two individual cultures.
Growth curves. The growth rates of the L. lactis
NCDO763 strains in different minimal media were measured with a Bioscreen C
analyzer (Labsystems, Helsinki, Finland) and a Biolink software
program. A total of 300 µl of medium was inoculated with 6 µl of
cells from an overnight saturated culture in CDM and washed twice
with
-glycerophosphate,
and the ODs were measured every 10 min at 450 nm during a 30-h
period. Results are means of at least four determinations.
Nucleotide sequence accession number. The nucleotide
sequence reported in this paper appears in the DDBJ, EMBL, and GenBank
nucleotide sequence databases under the accession no.
AF146529.
 |
RESULTS |
Characterization of araT. The analysis of the
sequence revealed an open reading frame of 392 codons that could encode a 43-kDa
protein. This size is in agreement with the molecular mass of the
purified enzyme, which was previously estimated by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis at 43.5 kDa (43).
The amino acid sequences of the four protein fragments of the enzyme
that had been sequenced earlier (42a) were
present in the deduced amino acid sequence. We found a putative
ribosome binding site (GAGG) ending 7 bp upstream of the ATG start
codon and two potential promoters (TTGTCA-TATAAT and TTGTCA-TAGAAC)
ending 12 and 40 bp upstream of the ribosome binding site. We also
observed a putative
-independent
transcriptional terminator ending 24 bp downstream of the stop codon.
The araT potential promoters are preceded by a sequence that
can form a
-independent
terminator structure, suggesting that a specific promoter initiates
the transcription of araT. Northern hybridization demonstrated
that araT was expressed in a 1.3-kb transcript (results not
shown), which means that araT is transcribed as a single gene.
A comparison with the nucleotide sequence of the araT gene of
L. lactis NCDO2118 showed that it is 91% homologous. As the latter
strain is less auxotrophic for amino acids, it was used for expression
studies. Also, the cloned potential promoter region in the fusion
vector allowed the expression of the luciferase. These results
confirm the presence of a promoter just upstream of the coding
sequence of araT. Two gene fusions with the luxAB genes as
reporter genes were introduced downstream of the promoter in a
L. lactis NCDO2118 wild-type background and an araT mutant
background. The activities of the two fusions were measured in CDM
with or without phenylalanine, tyrosine, tryptophan, methionine,
branched-chain amino acids, and
-ketoglutarate.
The levels of transcription of these fusions were similar in all
media (180 to 220 klx/OD unit), except in the absence of methionine,
where it decreased twofold (80 to 110 klx/OD unit). The difference in
expression between JIM5762 (with wild-type araT) and JIM
5929 (with mutant araT) was not significant (less than 20%).
Homologies. The deduced amino acid sequence of araT
had 21 to 36% homology with those of several aromatic, aspartate, and
imidazole/acetol phosphate aminotransferases that belong to the
subfamilies
,
,
and
of
aminotransferase family I (22). For these subfamilies,
Jensen and Gu (22) have revealed patterns of residue
conservation (fingerprints), so in an attempt to classify AraT, we
studied homologies of AraT with these fingerprints (Fig.
2). We also compared the substrate specificity of
AraT with that of the enzymes of each subfamily. The amino acid
sequence of AraT contained 80% of the conserved residues of subfamily
,
while it contained only 42% of the conserved residues of subfamily
and
24% of the conserved residues of subfamily
.
Moreover, the AraT sequence did not contain the highly conserved
subfamily
hinge
region, whose role in the mechanism of action was thoroughly
established. Also, the substrate specificity of AraT corresponds best
to the enzymes of subfamily
,
since AraT is active on aromatic amino acids, leucine, and
methionine, but not on aspartate. Indeed, aminotransferases classified
in subfamily
have
narrow specificity, i.e., for either aspartate or the aromatic amino
acids, while the aminotransferases of subfamily
have
broad specificity, i.e., for both aspartate and the aromatic amino
acids, and those of subfamily
have
specificity for both imidazole acetol phosphate and aromatic amino
acids. With these findings, we classified AraT in aminotransferase I
subfamily
.

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FIG. 2. Alignment of
the fingerprints of subfamilies
,
,
and
of
aminotransferase family I (according to Jensen and Gu [22])
with the amino acid sequence of AraT. The fingerprint residues conserved
in AraT are bold and underlined. Asterisks indicate conserved residues
of the subfamily
hinge
region.
|
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Distribution of araT in LAB. An internal 1-kb
fragment of araT was used as a probe for Southern hybridization with
EcoRV digestions of DNA from 10 strains of lactic acid bacteria
(LAB): L. lactis subsp. cremoris MG1363, AM2, and E8;
L. lactis subsp. lactis IL1403 and IL2118; Streptococcus
thermophilus CNRZ302; Lactobacillus bulgaricus ATCC 11842;
Lactobacillus paracasei CNRZ262; Lactobacillus helveticus
CNRZ223; and Lactobacillus plantarum CNRZ1008. Under
high-stringency conditions (50% formamide), the probe hybridized only
with all lactococcal DNA, but hybridization with L. lactis
subsp. cremoris AM2 was weak. Under low-stringency conditions
(20% formamide), it hybridized also with the DNA of
S. thermophilus, but not with DNA of the Lactobacillus strains
tested (data not shown).
Role of AraT in the degradation of amino acids to aroma
compounds. araT inactivation led to a 90 to 95% decrease of
aminotransferase activity on aromatic amino acids and to 50 and 25% decreases
of activity on methionine and leucine, respectively. In contrast,
it did not alter aminotransferase activity on isoleucine and valine
(data not shown).
The role of AraT in the total catabolism of the aromatic and branched-chain
amino acids and of methionine was studied by comparing amino acid
degradation and metabolite formation by wild-type cells and cells of
the araT mutant for 40 h in vitro. In the reaction medium
without
-ketoglutarate,
no degradation occurred (results not shown), while in the presence of
-ketoglutarate,
the wild-type cells degraded all amino acids to aroma compounds. For
example, after 40 h of incubation, around 80% of initial
phenylalanine was degraded to various metabolites (Fig.
3), which were previously identified as phenylpyruvate,
phenyllactate, and phenylacetate (43).
Phenylpyruvate is the product of phenylalanine transamination, and
phenyllactate and phenylacetate are further degradation products of
phenylpyruvate. In contrast, the araT mutant was not capable
of degrading phenylalanine (Fig. 3). The gene inactivation
also prevented almost completely the degradation of tyrosine and
tryptophan and decreased the degradation of leucine and methionine.
In contrast, it did not affect isoleucine and valine degradation
(Fig. 4).

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FIG. 3. Reverse-phase
HPLC separation and identification of [3H]phenylalanine
metabolites produced by incubation for 40 h of resting wild-type cells
(WT) and araT mutant cells (ArAT )
in a reaction mixture containing
-ketoglutarate
under the conditions described in Materials and Methods. C, refers to
the reaction mixture with the cells of the wild type before incubation
(time zero) (control).
|
|

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FIG. 4. Amino acid
degradation by wild-type cells (A) and araT mutant cells (B)
after incubation for 10 h (black bars), 20 h (hatched bars), and 40 h
(white bars) of resting cells in reaction medium containing radiolabeled
amino acids as a tracer and
-ketoglutarate,
under conditions described in Materials and Methods. Abbreviations: phe,
phenylalanine; tyr, tyrosine; trp, tryptophan; leu, leucine; ile,
isoleucine; val, valine; met, methionine. Error bars indicate standard
deviations of triplicate determinations.
|
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Role of AraT in amino acid biosynthesis. The wild-type
strain grew similarly in CDM and in CDM without tryptophan and a little slower
in the media lacking phenylalanine or tyrosine (Table 2).
araT inactivation did not affect growth in CDM or in CDM
without tryptophan and reduced the growth in CDM lacking
phenylalanine. In contrast, it almost completely prevented growth in
all CDM lacking tyrosine (Table 2). These results suggest
that in medium without phenylalanine, another enzyme, maybe an
aminotransferase, is expressed, that was not expressed in all media
without tyrosine.
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TABLE 2. Parameters of growth curves of the
wild-type strain and the araT mutant strain in minimal mediaa |
|
To test whether another aminotransferase was expressed in medium lacking
phenylalanine, we compared aminotransferase activities in wild-type
and mutant cells grown in the different media. In wild-type cells,
the aminotransferase activity on phenylalanine was 2.5-fold lower
than on phenylpyruvate (Fig. 5). The aminotransferase
activities were not significantly affected by a lack of phenylalanine
(Fig. 5) or tyrosine (results not shown). In mutant
cells grown in CDM, the aromatic aminotransferase activities were
much lower than in the wild-type cells, but above all, the ratios of
activities on amino acid and
-ketoacid
substrates were very different. Indeed, the phenylalanine
aminotransferase activity of the mutant was about ninefold lower than
its phenylpyruvate aminotransferase activity (Fig. 5),
and a similar ratio was observed for tyrosine and
hydroxyphenylpyruvate activities (results not shown). This means that
the aminotransferase present in the mutant strain had a relative
specific activity on
-ketoacid
substrate more than threefold higher than that of AraT, which was the
major aromatic aminotransferase of the wild-type cells. Moreover, the
aminotransferase activities of the mutant were multiplied by about
three in cells grown in medium without phenylalanine.

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FIG. 5. Phenylalanine
(phe) and phenylpyruvate (ppy) aminotransferase activities of wild-type
cells and araT mutant cells grown in CDM and CDM without
phenylalanine (CDM-phe). Aminotransferase activities are expressed as
glutamate (Glu) or
-ketoglutarate
(KG) produced from
-ketoglutarate
or glutamate. Error bars indicate standard deviations of triplicate
determinations.
|
|
 |
DISCUSSION |
With the aim of evaluating the role of AraT in the amino acid biosynthesis
and in the conversion of amino acids to aroma compounds, we cloned
and sequenced the gene coding for AraT in L. lactis. Sequence
and transcriptional analyses and Northern blotting showed that
araT is transcribed as a single gene, from one of the two
potential promoters located just upstream to a putative
-independent
transcriptional terminator downstream of the gene. Gene fusions
showed that transcription of araT is initiated in a fragment present
just upstream of the coding sequence, although the potential promoters
present in this fragment are not canonical (long spacing between
the
10
and
35
boxes or a poor
10
box). araT is likely constitutively expressed, because,
firstly, we observed that the concentration of aromatic amino acids
in the growth medium did not significantly affect the phenylalanine
aminotransferase activity. Secondly, the expression of the reporter
under the control of the araT promoter is not significantly
regulated by the composition of amino acids in the growth medium.
Lastly, araT inactivation had no influence on its
transcriptional regulation.
Homology analysis led us to classify AraT in aminotransferase I subfamily
,
described by Jensen and Gu (22). However, we
propose a subdivision in this subfamily, separating the aspartate-specific
aminotransferases from the aromatic-amino-acid-specific aminotransferases.
Indeed, phylogenic analysis performed with the sequences of all
members of subfamily
,
including AraT and homologous unidentified enzymes of the unfinished
genomes of Streptococcus mutans, Streptococcus pneumoniae,
Enterococcus faecalis, Bacillus subtilis, and Clostridium
acetobutylicum, revealed a subdivision into two subclasses (data
not shown). Subclass 1 contained AraT (which is the only
well-characterized enzyme of the subclass), five unidentified
AraT-homologous enzymes, and B. subtilis PatA, while subclass
2 contained only aspartate aminotransferases and three unidentified
AspaT-homologous enzymes. This subdivision suggests that PatA of
B. subtilis is an aromatic amino acid aminotransferase, rather
than an aspartate aminotransferase as previously hypothesized (22).
araT seems to be widespread in gram-positive bacteria, since we
detected by Southern hybridization a very homologous gene in all
strains of L. lactis subsp. lactis and L. lactis subsp.
cremoris tested and a less homologous gene in S. thermophilus.
Also, we found high homologies with unidentified genes of S. mutans
(68%), S. pneumoniae (67%), E. faecalis (62%),
B. subtilis (48%), and C. acetobutylicum (36%). Although
no gene with sufficient homology was detected in four
Lactobacillus strains by Southern hybridization, an
aminotransferase with activity on aromatic amino acids was present in
these bacteria, since we observed an increased degradation of
aromatic amino acids by these strains in the presence of an
-ketoacid
(42a).
The construction of an araT mutant allowed the evaluation of the role
of AraT in the catabolism and synthesis of amino acids. AraT is
almost essential for the conversion of aromatic amino acids to aroma
compounds and is also highly involved in leucine and methionine
conversion. It is responsible for 90 to 95% of the aminotransferase
activity towards aromatic amino acids, and there is no other
catabolic pathway for aromatic amino acids in lactococci, since we
did not observe any amino acid degradation in the absence of
-ketoacid
(results not shown). AraT also contributes to leucine and methionine
degradation, but contrary to what we found for the aromatic amino
acids, other aminotransferases are also highly involved in their
degradation. Such an aminotransferase, active on isoleucine, valine,
leucine, and methionine, was recently purified from L. lactis
subsp. cremoris NCDO763 (42a). Methionine
might also be degraded by another pathway, initiated by cystathionine
-lyase
(5) or cystathionine
-lyase
(1), although we did not detect methionine
degradation in the medium without
-ketoglutarate.
Gao et al. did not detect cystathionine lyase or methionine lyase
activity in lactococci either (15). Our results suggest
that AraT plays a role in cheese aroma development, since it is
responsible for more than 90% of the aromatic amino acid conversion
to
-ketoacids,
which are precursors of major aroma compounds, such as phenylacetate
or benzaldehyde, in cheese (44). It is also responsible
for around 50% of the methionine conversion to
-keto- -methylthiobutyric
acid, which was identified as the direct precursor of the aroma
compound methanethiol (15).
AraT also plays a major role in the biosynthesis of phenylalanine and
tyrosine, but it is not essential for tryptophan biosynthesis, since
another pathway was previously revealed in L. lactis (3).
Indeed, its inactivation slowed down the growth in medium deprived
of phenylalanine, but above all, it highly affected the growth
in all media deprived of tyrosine. However, after araT inactivation,
a low residual aromatic aminotransferase activity was still present.
Interestingly, this aminotransferase was ninefold more active
on the
-ketoacid
substrates than on amino acid substrates, compared to AraT, which was
only 2.5-fold more active on the
-ketoacid
substrates than on amino acid substrates, suggesting that this
aminotransferase is specialized in the biosynthesis of aromatic amino
acids. This is in agreement with the fact that this aminotransferase
activity was repressed by the presence of phenylalanine in the
medium. Surprisingly, the mutant did not grow in the medium lacking
both phenylalanine and tyrosine, although the aminotransferase
induced by a lack of phenylalanine was also active on hydroxyphenylpyruvate.
On an other hand, the lack of tyrosine in the medium did not affect
the growth of the wild-type strain, which has aromatic aminotransferase
activity. These results suggest that tyrosine also plays a role
in the regulation of the aminotransferase activity present in the
mutant. Further investigations will be necessary to completely
understand the regulation of these activities. The biosynthetic
aromatic aminotransferase activity might be due to one of the other
aminotransferase-homologous genes found in the genome of L. lactis
subsp. lactis (32a). The presence of two or more
aromatic aminotransferases with catabolic and biosynthetic functions
was also demonstrated for several other bacteria, such as
B. subtilis (28), E. coli (32),
and P. aeruginosa (31, 42).
In conclusion, we characterized the gene coding for the major lactococcal
AraT and we demonstrated that it belongs to a new subclass of
aminotransferase subfamily I/ .
By using an araT mutant, we demonstrated the major role of
AraT in the conversion of aromatic amino acids to flavor compounds
and in aromatic-amino-acid biosynthesis. However, another
biosynthetic aromatic aminotransferase is induced in the absence of
phenylalanine in the culture medium.
 |
ACKNOWLEDGMENTS |
The work was supported by a FAIR contract (CT97-3173) and a TMR grant
(ERB4001GT954921) from the Commission of European Communities.
We thank M. Nardi, P. Renault, F. Rul, E. Maguin, and P. Tailliez for
providing chromosomal DNAs of LAB strains and P. Renault for helpful
discussions and for critical reading of the manuscript.
 |
FOOTNOTES |
* Corresponding author. Mailing address: Unité
de Recherches de Biochimie et Structure des Protéines, INRA, Centre de
Recherches de Jouy-en-Josas, Domaine de Vilvert, 78352 Jouy-en-Josas,
Cedex, France. Phone: 33 1 34 65 21 59. Fax:
33 1 34 65 21 63. E-mail:
Mireille.Yvon@diamant.jouy.inra.fr.
 |
REFERENCES |
| 1. |
Alting, A. C., W. J. M. Engels, S. van Schalkwijk,
and F. A. Exterkate. 1995. Purification and characterization of
cystathionine
-lyase
from Lactococcus lactis subsp. cremoris B78 and its possible
role in flavor development in cheese. Appl. Environ. Microbiol. 61:4037-4042. |
| 2. |
Altschul, S. F., T. L. Madden, A. A. Schaffer, J.
Zang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and
PSI-BLAST: a new generation of protein database search programs. Nucleic
Acids Res. 25:3389-3402. |
| 3. |
Bardowski, J., S. D. Ehrlich, and A. Chopin.
1992. Tryptophan biosynthesis genes in Lactococcus lactis subsp.
lactis. J. Bacteriol. 174:6563-6570. |
| 4. |
Bradford, M. M. 1976. A rapid and
sensitive method for the quantitation of microgram quantities of protein
utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254. |
| 5. |
Bruinenberg, P. G., G. de Roo, and G. K. V.
Limsowtin. 1997. Purification and characterization of cystathionine
-lyase
from Lactococcus lactis subsp. cremoris SK11: possible role in
flavor compound formation during cheese maturation. Appl. Environ.
Microbiol. 63:561-566. |
| 6. |
Chopin, A., M. C. Chopin, A. Moillo-Batt, and P.
Langella. 1984. Two plasmid-determined restriction and modification
systems in Streptococcus lactis. Plasmid 11:260-263. |
| 7. |
Christensen, K. R., and G. A. Reineccius.
1995. Aroma extract dilution analysis of aged Cheddar cheese. J. Food Sci.
60:218-220. |
| 8. |
Cocaign-Bousquet, M., C. Garrigues, L. Novak, N. D.
Lindley, and P. Loubiere. 1995. Rational development of a simple
synthetic medium for the sustained growth of Lactococcus lactis. J.
Appl. Bacteriol. 79:108-116. |
| 9. |
Delorme, C., D. S. Ehrlich, and P. Renault.
1999. Regulation of expression of the Lactococcus lactis histidine
operon. J. Bacteriol. 181:2026-2037. |
| 10. |
Dumont, J. P., S. Roger, and J. Adda.
1974. Etude des composés volatils neutres présents dans les fromages à pâte
molle et croûte lavée. Lait 54:31-43. |
| 11. |
Dunn, H., and R. C. Lindsay. 1985.
Evaluation of the role of microbial Strecker-derived aroma compounds in
unclean-type flavors of Cheddar cheese. J. Dairy Sci. 68:2859-2874. |
| 12. |
Engels, W. J. M., R. Dekker, C. de Jong, R. Neeter,
and S. Visser. 1997. A comparative study of volatile compounds in
the water-soluble fraction of various types of ripened cheese. Int. Dairy J.
7:225-263. |
| 13. |
Gao, S., D. H. Oh, J. R. Broadbent, M. E. Johnson,
B. C. Weimer, and J. L. Steele. 1997. Aromatic amino acid
catabolism by lactococci. Lait 77:371-381. |
| 14. |
Gao, S., and J. L. Steele. 1998.
Purification and characterization of oligomeric species of an aromatic amino
acid aminotransferase from Lactococcus lactis subsp. lactis
S3. J. Food Biochem. 22:197-211. |
| 15. |
Gao, S., E. S. Mooberry, and J. L. Steele.
1998. Use of 13C nuclear magnetic resonance and gas
chromatography to examine methionine catabolism by lactococci. Appl.
Environ. Microbiol. 64:4670-4675. |
| 16. |
Gibson, T. J. 1984. Studies on the
Eppstein Barr virus genome. Ph.D. thesis. University of Cambridge,
Cambridge, England |
| 17. |
Glatron, M. F., and G. Rapoport. 1972.
Biosynthesis of the parasporal reclusion of Bacillus thuringiensis:
half-life of its corresponding messenger RNA. Biochimie 54:1291-1301. |
| 18. |
Guthrie, B. D. 1993. Influence of
cheese-related microflora on the production of unclean-flavored aromatic
amino acid metabolites in Cheddar cheese. Ph.D. dissertation. University of
Wisconsin Madison,
Madison |
| 19. |
Holo, H., and I. F. Nes. 1989.
High-frequency transformation, by electroporation, of Lactococcus lactis
subsp. cremoris grown with glycine in osmotically stabilized media.
Appl. Environ. Microbiol. 55:3119-3123. |
| 20. |
Jensen, R. A., and S. L. Stenmark. 1975.
The ancient origin of a second microbial pathway for L-tyrosine
biosynthesis in prokaryotes. J. Mol. Evol. 4:249-259. |
| 21. |
Jensen, R. A. 1985. Biochemical pathways
in prokaryotes can be traced backward through evolutionary time. Mol. Biol.
Evol. 2:92-108. |
| 22. |
Jensen, R. A., and W. Gu. 1996.
Evolutionary recruitment of biochemically specialized subdivisions of family
I within the protein superfamily of aminotransferases. J. Bacteriol. 178:2161-2171 |
| 23. |
Kubickova, J., and W. Grosch. 1997.
Evaluation of potent odorants of Camembert cheese by dilution and
concentration techniques. Int. Dairy J. 7:65-70. |
| 24. |
Loureiro dos Santos, A. L., and A. Chopin.
1987. Shotgun cloning in Streptococcus lactis. FEMS Microbiol. Lett.
42:209-212. |
| 25. |
Maguin, E., P. Duwat, T. Hege, D. Ehrlich, and A.
Gruss. 1992. New thermosensitive plasmid for gram-positive
bacteria. J. Bacteriol. 174:5633-5638. |
| 26. |
Milo, C., and G. A. Reineccius. 1997.
Identification and quantification of potent odorants in regular-fat and
low-fat mild Cheddar cheese. J. Agric. Food Chem. 45:3590-3594. |
| 27. |
Morgan, M. E., R. C. Lindsay, and L. M. Libbey.
1966. Identity of additional aroma constituents in milk cultures of
Streptococcus lactis var. Maltigenes. J. Dairy Sci. 49:15-18. |
| 28. |
Nester, E. W., and A. L. Montoya. 1976. An
enzyme common to histidine and aromatic amino acid biosynthesis in
Bacillus subtilis. J. Bacteriol. 126:699-705. |
| 29. |
O'Sullivan, D. J., and T. R. Klaenhammer.
1993. Rapid mini-prep isolation of high-quality plasmid DNA from
Lactococcus and Lactobacillus spp. Appl. Environ. Microbiol.
59:2730-2733. |
| 30. |
Patel, N., D. L. Pierson, and R. A. Jensen.
1977. Dual enzymatic routes to L-tyrosine and
L-phenylalanine via pretyrosine in Pseudomonas
aeruginosa. J. Biol. Chem. 252:5839-5846. |
| 31. |
Patel, N., S. L. Stenmark-Cox, and R. A. Jensen.
1978. Enzymological basis of reluctant auxotrophy for phenylalanine and
tyrosine in Pseudomonas aeruginosa. J. Biol. Chem. 253:2972-2978. |
| 32. |
Powell, T., and J. F. Morrison. 1978. The
purification and properties of the aspartate aminotransferase and
aromatic-amino-acid aminotransferase from Escherichia coli. Eur.
J. Biochem. 87:391-400. |
| 32a. |
Renault, P. Personal communication. |
| 33. |
Renault, P., G. Corthier, N. Goupil, C. Delorme,
and S. D. Ehrlich. 1996. Plasmid vectors for Gram-positive bacteria
switching from high to low copy number. Gene 183:175-182. |
| 34. |
Sambrook, J., E. F. Fritsch, and T. Maniatis.
1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor
Laboratory, Cold Spring Harbor, N.Y |
| 35. |
Schormüller, J. 1968. The chemistry and
biochemistry of cheese ripening. Adv. Food Res. 16:231-234. |
| 36. |
Simon, D., and A. Chopin. 1988.
Construction of a vector plasmid family for molecular cloning in
Streptococcus lactis. Biochimie 70:559-566. |
| 37. |
Smid, E. J., and W. N. Konings. 1990.
Relationship between utilization of proline and proline-containing peptides
and growth of Lactococcus lactis. J. Bacteriol. 172:5286-5292. |
| 38. |
Song, J., and R. A. Jensen. 1996. PhhR, a
divergently transcribed activator of the phenylalanine hydroxylase gene
cluster of Pseudomonas aeruginosa. Mol. Microbiol. 22:497-507. |
| 39. |
Terzaghi, B. E., and W. E. Sandine. 1975.
Improved medium for lactic streptococci and their bacteriophages. Appl.
Microbiol. 29:807-813. |
| 40. |
Thirouin, S., L. Rijnen, J.-C. Gripon, and M. Yvon.
1995. Inventaire des activités de dégradation des acides aminés aromatiques
et des acides aminés à chaines ramifiées chez Lactococcus lactis,
abstr. M4. Club des bactéries lactiques 7ème
Colloque, Paris, France |
| 41. |
Whitaker, R. J., C. G. Gaines, and R. A. Jensen.
1982. A multispecific quintet of aromatic aminotransferases that overlap
different biochemical pathways in Pseudomonas aeruginosa. J. Biol.
Chem. 257:13550-13556. |
| 42. |
Xia, T., and R. A. Jensen. 1990. A single
cyclohexadienyl dehydrogenase specifies the prephenate dehydrogenase and
arogenate dehydrogenase components of the dual pathways to L-tyrosine
in Pseudomonas aeruginosa. J. Biol. Chem. 265:20033-20036. |
| 42a. |
Yvon, M. Personal communication. |
| 43. |
Yvon, M., S. Thirouin, L. Rijnen, D. Fromentier,
and J.-C. Gripon. 1997. An aminotransferase from Lactococcus
lactis initiates conversion of amino acids to cheese flavor compounds.
Appl. Environ. Microbiol. 63:414-419. |
| 44. |
Yvon, M., S. Berthelot, and J.-C. Gripon.
1999. Adding
-ketoglutarate
to semi-hard cheese curd highly enhances the conversion of amino acids to
aroma compounds. Int. Dairy J. 8:889-898. |
| 45. |
Zhao, G., T. Xia, J. Song, and R. A. Jensen.
1994. Pseudomonas aeruginosa possesses homologues of mammalian
phenylalanine hydroxylase and 4 -carbinolamine
dehydratase/DCoH as part of a three-component gene cluster. Proc. Natl.
Acad. Sci. USA 91:1366-1370. |
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