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What Is Biotechnology?

Biotechnology is technology based on biology, especially when used in agriculture, food science, and medicine.

Of the many different definitions available, the one formulated by the UN Convention on Biological Diversity is one of the broadest:

Biotechnology is any technological application that uses biological systems, living organisms, or derivatives thereof, to make or modify products or processes for specific use. One section of biotechnology is the directed use of organisms for the manufacture of organic products (examples include beer, milk-products, and skin). Naturally present bacteria are utilized by the mining industry in bioleaching. Biotechnology is also used to recycle, treat waste, clean up sites contaminated by industrial activities (bioremediation), and produce biological weapons.

There are also applications of biotechnology that do not use living organisms. Examples are DNA microarrays used in genetics and radioactive tracers used in medicine.

Modern biotechnology is often associated with the use of genetically altered microorganisms such as E. coli or yeast for the production of substances like insulin or antibiotics. It can also refer to transgenic animals or transgenic plants, such as Bt corn. Genetically altered Mammalian cells, such as Chinese Hamster ovarian cells, are also widely used to manufacture pharmaceuticals. Another promising new biotechnology application is the development of plant-made pharmaceuticals.

There are number of jargon terms for sub-fields of biotechnology.

Red biotechnology is biotechnology applied to medical processes. An example would include an organism designed to produce an antibiotic, or engineering genetic cures to diseases through genomic manipulation.

White biotechnology, also known as grey biotechnology, is biotechnology applied to industrial processes. An example would include an organism designed to produce a useful chemical. White biotechnology tends to consume less resources that traditional processes when used to produce industrial goods.

Green biotechnology is biotechnology applied to agricultural processes. An example would include an organism designed to grow under specific environmental conditions or in the presence (or absence) of certain agricultural chemicals. Green biotechnology tends to produce more environmentally friendly solutions then traditional industrial agriculture. An example of this would include a plant engineered to express a pesticide, thereby eliminating the need for external application of pesticides.

The term blue biotechnology has also been used to describe the marine and aquatic applications of biotechnology, but its use is relatively rare.

Biotechnology timeline:

8000BC Collecting of seeds for replanting. Evidence that Babylonians, Egyptians and Romans used selective breeding (artificial selection) practices to improve livestock.

6000BC Brewing beer, fermenting wine, baking bread with help of yeast

4000BC Chinese made yoghurt and cheese with lactic-acid-producing bacteria

1500 Plant collecting around the world

1800 Nikolai I. Vavilov created comprehensive research on breeding animals

1880 Microorganisms discovered

1856 Gregor Mendel started recombinant plant genetics

1919 Karl Ereky, a Hungarian engineer, first used the word biotechnology

1975 Method for producing monoclonal antibody developed by Kohler and Milstein

1980 Modern biotech is characterized by recombinant DNA technology. The prokaryote model, E. coli, is used to produce insulin and other medicine, in human form. (About 5% of diabetics are allergic to animal insulins available before)

1992 FDA approves of the first GM food from Calgene: "flavor saver" tomato

2000 Completion of the Human Genome Project

Industrial biotechnology (also known as white biotechnology) is the practice of using cells to generate industrially-useful products. The Economist speculated (as cited in the Economist article listed in the "References" section) industrial biotechnology might significantly impact the chemical industry. The Economist also suggested it might enable economies to become less dependent on fossil fuels.

Diversa is an example of a company that specializes in industrial biotechnology.

Bioremediation can be defined as any process that uses microorganisms or their enzymes to return the environment altered by contaminants to its original condition. Bioremediation may be employed in order to attack specific contaminants, such as chlorinated pesticides that are degraded by bacteria, or a more general approach may be taken, such as oil spills that are broken down using multiple techniques including the addition of fertilizer to facilitate the decomposition of crude oil by bacteria.

Not all contaminants are readily treated through the use of bioremediation; for example, heavy metals such as cadmium and lead are not readily absorbed or captured by organisms. The integration of metals such as mercury into the food chain may make things worse as organisms bioaccumulate these metals.

However, there are a number of advantages to bioremediation, which may be employed in areas which cannot be reached easily without excavation. For example, hydrocarbon spills (or more specific: gasoline) may contaminate groundwater well below the surface of the ground; injecting the right organisms, in conjunction with oxygen-forming compounds, may significantly reduce concentrations after a period of time. This is much less expensive than excavation followed by burial elsewhere or incineration, and reduces or eliminates the need for pumping and treatment, which is a common practice at sites where hydrocarbons have contaminated groundwater.

Generally, bioremediation technologies can be classified as in situ or ex situ. In situ bioremediation involves treating the contaminated material at the site while ex situ involves the removal of the contaminated material to be treated elsewhere. Some examples of bioremediation technologies are bioventing, land farming, bioreactor, composting, bioaugmentation and biostimulation.

A bioreactor is a vessel in which is carried out a chemical process which involves organisms or biochemically active substances derived from such organisms.

Bioreactors are commonly cylindrical, ranging in size from some liter to cube meters,and are often made of stainless steel.

Bioreactor design Bioreactor design is quite a complex engineering task. Under optimum conditions the microorganisms or cells will reproduce at an astounding rate. The vessel's environmental conditions like gas (i.e., air, oxygen, nitrogen, carbon dioxide) flowrates, temperature, pH and dissolved oxygen levels, and agitation speed need to be closely monitored and controlled. One bioreactor manufacturer, Broadley-James Corporation, uses vessels, sensors, controllers, and a control system, digitally networked together for their bioreactor system.

Fouling can harm the overall sterility and efficiency of the bioreactor, especially the heat exchangers. To avoid it the bioreactor must be easily cleanable and must be as smooth as possible (therefore the round shape).

Heat exchange is needed to maintain the bioprocess at a constant temperature. Biological fermentation is a major source of heat, therefore in most cases bioreactors need water refrigeration. They can be refrigerated with an external jacket or, for very large vessels, with internal coils.

Optimal oxygen transfer is perhaps the most difficult task to accomplish. Oxygen is poorly soluble in water -and even less in fermentation broths- and is relatively scarce in air (20.8%). Oxygen transfer is usually helped by agitation, that is also needed to mix nutrients and to keep the fermentation homogeneous. There are however limits to the speed of agitation, due both to high power consumption (that's proportional to the cube of the speed) and the damage to organisms due to excessive tip speed.

Compost is the decomposed remnants of organic materials (those with plant and animal origins). Compost is used in gardening and agriculture, mixed in with the soil. It improves soil structure, increases the amount of organic matter, and provides nutrients.

Biochem Biophys Res Commun, 1999 Aug 2, 261(2), 238 - 41
Protein expression in liposomes; Oberholzer T et al.; Compartmentalization is one of the key steps in the evolution of cellular structures and, so far, only few attempts have been made to model this kind of "compartmentalized chemistry" using liposomes . The present work shows that even such complex reactions as the ribosomal synthesis of polypeptides can be carried out in liposomes . A method is described for incorporating into 1-palmitoyl-2-oleoyl-sn-3-phosphocholine (POPC) liposomes the ribosomal complex together with the other components necessary for protein expression . Synthesis of poly(Phe) in the liposomes is monitored by trichloroacetic acid of the (14)C-labelled products . Control experiments carried out in the absence of one of the ribosomal subunits show by contrast no significant polypeptide expression . This methodology opens up the possibility of using liposomes as minimal cell bioreactors with growing degree of synthetic complexity, which may be relevant for the field of origin of life as well as for biotechnological applications .

Biodegradation, 1999 Feb, 10(1), 63 - 73
Anaerobic biodegradability of phthalic acid isomers and related compounds; Kleerebezem R et al.; All three phthalic acid isomers (ortho, meta and para benzene dicarboxylic acid) are produced in massive amounts, and used in the chemical industry as plasticizers or for the production of polyester . Wastestreams generated during the production of phthalate isomers generally contain high concentrations of aromatic acids . To study the potential biodegradability of these primarily anthropogenic compounds in anaerobic bioreactors, biodegradability studies were performed . Compounds tested were benzoate, ortho-phthalate, isophthalate, terephthalate, dimethyl phthalate, dimethyl terephthalate, para-toluate and para-xylene . Seed materials tested were two types of granular sludge and digested sewage sludge . It was found that all phthalate isomers and their corresponding dimethyl-esters, could be completely mineralized by all seed materials studied . Lag phases required for 50% degradation of these compounds, ranged from 17 to 156 days . The observed degradation curves could be explained by growth of an initially small amount of organisms in the inoculum with the specific ability to degrade one phthalate isomer . The observed order in the length of the lag phases for the phthalate isomers is: phthalate < terephthalate < isophthalate . This order appears to be related to the environmental abundancy of the different phthalate isomers . The initial step in the degradation pathway of both dimethyl phthalate esters was hydrolysis of the ester sidechain, resulting in the formation of the corresponding mono-methyl-phthalate isomer and phthalate isomer . The rate limiting step in mineralization of both dimethyl phthalate and dimethyl terephthalate was found to be fermentation of the phthalate isomer . Para-toluate was degraded only by digested sewage sludge after a lag phase of 425 days . The observed degradation rates of this compound were very low . No mineralization of para-xylene was observed . In general, the differences in the lag phases between different seed materials were relatively small . These results indicate that the time needed for the start-up of anaerobic bioreactors treating wastewaters containing phthalic acid isomers, depends little on the microbial composition of the seed material applied, but may take several months.

Mol Reprod Dev, 1999 Sep, 54(1), 17 - 23
Analysis of control elements for position-independent expression of human alpha-lactalbumin YAC; Fujiwara Y et al.; A major problem in the production of transgenic animal bioreactors using microinjections is the low production rate of high-expressing transgenic animals due to the position effect . We previously reported that transgenic rats carrying the 210 kb yeast artificial chromosome (YAC) including the human alpha-lactalbumin gene express the transgene in a position-independent manner . The 210 kb YAC was thought to have all the elements necessary for position-independent expression . In this paper, we constructed fragmented YAC clones and a cosmid clone, and produced transgenic rats to analyze these elements . Transgenic rats with both the 50 kb upstream and downstream regions of the alpha-lactalbumin gene had position-independent expression . Transgenic rats with the 20 kb upstream and downstream regions, however, had position-dependent expression . Therefore, all the elements necessary for position-independent expression are thought to be located in the 50 kb upstream to 50 kb downstream region of the alpha-lactalbumin gene . Furthermore, we replaced the human alpha-lactalbumin promoter with the bovine alphaS1-casein promoter in the 210 kb YAC and produced transgenic rats . Position-dependent expression was observed . The elements required for position-independent expression of the bovine alphaS1-casein gene are different from those required for the human alpha-lactalbumin gene, despite the fact that the two genes have the same tissue and developmental specificity .

Appl Microbiol Biotechnol, 1999 Jun, 51(6), 760 - 4
High-density Escherichia coli cultures for continuous L(-)-carnitine production; Obon JM et al.; The use of a biological procedure for L-carnitine production as an alternative to chemical methods must be accompanied by an efficient and highly productive reaction system . Continuous L-carnitine production from crotonobetaine was studied in a cell-recycle reactor with Escherichia coli O44 K74 as biocatalyst . This bioreactor, running under the optimum medium composition (25 mM fumarate, 5 g/l peptone), was able to reach a high cell density (26 g dry weight/l) and therefore to obtain high productivity values (6.2 g L-carnitine l-1 h-1) . This process showed its feasibility for industrial L-carnitine production . In addition, resting cells maintained in continuous operation, with crotonobetaine as the only medium component, kept their biocatalytic capacity for 4 days, but the biotransformation capacity decreased progressively when this particular method of cultivation was used.

Ann N Y Acad Sci, 1999 Jun 18, 875, 405 - 11
Bioreactor development for tissue-engineered cartilage; Wu F et al.; The development of tissue engineered cartilage is emerging as a potential treatment for the repair of cartilage defects . By seeding chondrocytes onto poly-glycolic acid (PGA) biodegradable scaffolds within a convective-flow bioreactor, the synthesis of tissue-engineered articular cartilage has been recently demonstrated . The ability to cultivate and manipulate this cell-polymer construct to possess specific dimensions, as well as biochemical and biomechanical properties is critical for potential application as an in vivo therapy of damaged articular surfaces . Bioreactor design requirements for stages from research to development to commercialization are discussed . Advantages and limitations to various bioreactor designs are critiqued . These studies illustrate the ability to synthesize tissue-engineered cartilage under convective-flow conditions for potential human tissue repair.

Ann N Y Acad Sci, 1999 Jun 18, 875, 386 - 97
Computer controlled bioreactor for large-scale production of cultured skin grafts; Prenosil JE et al.; KERATOR--an automated membrane bioreactor--was developed to produce Autologous Wound Dressing (AWD) at significantly reduced cost and time of transplantation down to two weeks time . At the same time, the risk of human error is largely eliminated . The computer-controlled reactor is modular, allowing the production of up to 0.5 m2 AWD at one time . A special feature of the reactor is a hydrophilic polymeric support membrane on which the human keratinocytes attach and proliferate . Recently developed serum-free medium is used to culture keratinocytes as a monolayer without a feeder layer of murine fibroblasts . The use of composite skin grafts consisting of a subconfluent keratinocyte layer on a polymeric support film is a very promising method for skin transplantation owing to the high activity of non-differentiated keratinocyte cells and reduction of the time needed to prepare the skin grafts . A microscopic video system with image analysis was developed for on-line monitoring of the cell growth and morphology in the KERATOR . The computer uses the obtained information to control medium change and to predict the end of cultivation.

Ann N Y Acad Sci, 1999 Jun 18, 875, 364 - 8
Cultivation and characterization of a new immortalized human hepatocyte cell line, HepZ, for use in an artificial liver support system; Werner A et al.; The new human hepatocyte cell line HepZ was investigated with regard to use it for a mass cell cultivation . The cells were originally derived from a human liver biopsy and immortalized through lipofectamine-mediated transfection of albumin-promotor-regulated antisense constructions against the negative controlling cell cycle proteins Rb and p53 (pAlb asRb, pAIb asp53) . Furthermore, plasmids including genes coding for the cellular transcription factor E2F and D1 cyclin (pCMV E2F, pSV2neo D1) were cotransfected to overcome the G1-restriction point . Cell cultivation was performed in a 2-liter bioreactor with a working volume of 1 liter . With CultiSpher G microcarriers used in a concentration of 3 g/l a maximal density of 7.1 x 10(6) cells/ml was achieved in a cultivation period of 20 days . The cells exhibited a maximal specific growth rate of 1.0 per day in the first 4 days . After 9 days of cultivation the stationary growth phase was reached with an average cell density of 5.5 x 10(6) cells/ml . The viability status of the culture was determined indirectly by measuring of the lactate dehydrogenase activity (LDH) at 37 degrees C . During the growth phase the activity rose slightly up to a value of 200 U/l . The cells were flat after first attachment on the gelatine microcarriers and spherical after growing into the three-dimensional inner matrix--both of which characteristics were verified by scanning electron microscopy (SEM) and transmission electron microscopy (TEM) . The liver-specific cytochrome P450 activity was challenged with a pulse of 7 micrograms/ml lidocaine at a cell density of 4.5 x 10(6) cells/ml . After an induction period of 3 days with 50 micrograms/ml of phenobarbital, 26 ng/ml MEGX were generated within one day compared to 5 ng/ml without induction . The new cell line HepZ has proven to retain liver-specific qualities and to be appropriate for mass cell cultivation for bioartificial devices.

Ann N Y Acad Sci, 1999 Jun 18, 875, 326 - 39
Bioreactors for hybrid liver support: historical aspects and novel designs; Busse B et al.; A novel bioreactor construction has been designed for the utilization of hepatocytes and sinusoidal endothelial cells . The reactor is based on capillaries for hepatocyte aggregate immobilization . Three separate capillary membrane systems, each permitting a different function are woven in order to create a three dimensional network . Cells are perfused via independent capillary membrane compartments . Decentralized oxygen supply and carbon dioxide removal with low gradients are possible . The use of identical parallel units to supply hepatocytes facilitates scale up . In vitro studies demonstrate long-term external metabolic function in primary isolated hepatocytes within bioreactors . These systems are capable of supporting essential liver functions . Animal experiments have verified the possibility of scaling-up the bioreactors for clinical treatment . However, since there is no reliable animal model for investigation of the treatment of acute liver failure, the promising results obtained from these studies have limited relevance . The small number of clinical studies performed so far is not sufficient to reach conclusions about improvements in the therapy of acute liver failure . Although important progress has been made in the development of these systems, various hepatocyte culture models and bioreactor constructions are being discussed in the literature, which indicates competition in this field of medical research . An overview, which emphasizes the development of hepatocyte culture models for bioreactors, subsequent in vitro studies, animal studies, and clinical application, is also provided.

Ann N Y Acad Sci, 1999 Jun 18, 875, 310 - 25
Overview of extracorporeal liver support systems and clinical results; McLaughlin BE et al.; Patients with acute liver failure (ALF) continue to have an almost 50% mortality rate despite improvements associated with the use of orthotopic liver transplantation (OLT) . Numerous ex vivo methods have been developed in attempts to improve patient survival . These methods can be divided into three groups: detoxification (e.g., dialysis, charcoal adsorption, plasma exchange), which only provides excretory function; ex vivo liver perfusion (e.g., whole organ or tissue perfusion), which provides some metabolic function; and bioartificial or cell-based systems, which combine elements of the first two methods . Clinical trials have shown minimal efficacy of the various detoxification methods in terms of ALF patient survival, while the relative success of OLT has shown the importance of providing metabolic as well as excretory functions . Attempts to provide those additional functions with ex vivo tissue perfusion have been fraught with complications such as clotting and acute tissue rejection, leading to the conceptual development of cell-based bioreactor systems . A number of these bioartificial systems have been clinically evaluated, and the preliminary patient survival rates have encouraged further work in this area.

Arch Otolaryngol Head Neck Surg, 2001 May, 127(5), 525 - 8
Bacterial colonization of endotracheal tubes in intubated neonates; Friedland DR et al.; OBJECTIVE: To obtain in vivo bacterial colonization profiles on endotracheal tubes at different sites in the neonatal airway in an attempt to better characterize one potential element of chondritis . DESIGN: A case series in which cultures were obtained from calculated segments of 33 endotracheal tubes immediately following extubation . This allowed for sampling at specific levels of the airway corresponding to the trachea, the subglottis, and the oropharynx . Data collected included gender, race, duration of intubation, use of antibiotic therapy, comorbidities, gestational age at birth and extubation, crown-rump length, weight, radiographic distance from tube tip to carina, and culture results . SETTING: Newborn intensive care unit at a tertiary care medical center . PATIENTS: Twenty-nine neonates intubated for longer than 24 hours (range, 24 hours to 15 days) . MAIN OUTCOME MEASURES: Bacterial and fungal cultures obtained from 3 endotracheal tube segments for each extubation . RESULTS: A statistically significant difference (P < .05) was found in colonization rates between patients intubated for less than 4 days and those intubated for longer periods . No significant difference was noted in bacterial profile between the 3 sites . CONCLUSIONS: Data demonstrate that bacterial colonization of an indwelling object in the neonatal airway increases with the duration of intubation . Furthermore, 4 days seems to represent a critical period in the formation of such colonization (possibly in the form of a biofilm) . These bacteria may contribute to the chondritis known to precede the development of subglottic stenosis . Further studies are indicated to suggest ways to interrupt this process and reduce the incidence of airway injury.

Antimicrob Agents Chemother, 2001 Jun, 45(6), 1761 - 70
Multidrug efflux pumps: expression patterns and contribution to antibiotic resistance in Pseudomonas aeruginosa biofilms; De Kievit TR et al.; Pseudomonas aeruginosa biofilms are intrinsically resistant to antimicrobial chemotherapies . At present, very little is known about the physiological changes that occur during the transition from the planktonic to biofilm mode of growth . The resistance of P . aeruginosa biofilms to numerous antimicrobial agents that are substrates subject to active efflux from planktonic cells suggests that efflux pumps may substantially contribute to the innate resistance of biofilms . In this study, we investigated the expression of genes associated with two multidrug resistance (MDR) efflux pumps, MexAB-OprM and MexCD-OprJ, throughout the course of biofilm development . Using fusions to gfp, we were able to analyze spatial and temporal expression of mexA and mexC in the developing biofilm . Remarkably, expression of mexAB-oprM and mexCD-oprJ was not upregulated but rather decreased over time in the developing biofilm . Northern blot analysis confirmed that these pumps were not hyperexpressed in the biofilm . Furthermore, spatial differences in mexAB-oprM and mexCD-oprJ expression were observed, with maximal activity occurring at the biofilm substratum . Using a series of MDR mutants, we assessed the contribution of the MexAB-OprM, MexCD-OprJ, MexEF-OprN, and MexXY efflux pumps to P . aeruginosa biofilm resistance . These analyses led to the surprising discovery that the four characterized efflux pumps do not play a role in the antibiotic-resistant phenotype of P . aeruginosa biofilms.

Biomaterials, 2001 May, 22(10), 1035 - 47
Long-term stability of grafted polyethylene glycol surfaces for use with microstamped substrates in neuronal cell culture; Branch DW et al.; Crucial to long-term stability of neuronal micropatterns is functional retention of the underlying substratum while exposed to cell culture conditions . We report on the ability of covalently bound PEG films in long-term cell culture to continually retard protein adhesion and cell growth . PDMS microstamps were used to create poly-d-lysine (PDL) substrates permissive to cell attachment and growth, and polyethylene glycol (PEG) substrates were used to minimize protein and cell adhesion . Film thickness was measured using null ellipsometry and atomic force microscopy (AFM) . Organosilane film structure was examined using Fourier transform infrared (FT-IR) spectroscopy . Long-term film stability in cell culture conditions was tested by immersion in 0.1 M sodium phosphate buffer pH 7.4 for up to one month . Null ellipsometry and water contact measurements indicated that organosilane films were stable up to one month, whereas the PEG film thickness declined rapidly after day 25 . Hippocampal cells plated at 200 cells/mm2 on uniform PEG substrates gave a steady increase in biofilm thickness on PEG films throughout the culture, possibly from proteins of neuronal origin . We found that all the layers in the cross-linking procedure were stable in cell culture conditions, with the exception of PEG, which degraded after day 25.

J Clin Periodontol, 2001 Jun, 28(6), 569 - 75
Infection-mediated early-onset periodontal disease in P/E-selectin-deficient mice; Niederman R et al.; BACKGROUND: Retrospective and correlation studies suggest that early-onset periodontal disease may be due to a deficiency in phagocyte function, a pathogenic oral biofilm, and/or dysregulated gingival cytokine expression . Increased susceptibility to periodontal disease is therefore thought to result from multiple risk factors . METHODS: We tested this hypothesis prospectively using P/E-selectin adhesion molecule deficient mice that mimic the human syndrome leukocyte adhesion deficiency II . RESULTS: Our studies demonstrate that, in comparison to wild type animals, P/E-/- mice exhibit: spontaneous, early onset alveolar bone loss which is significant by 6 weeks of age; a 10-fold elevation in bacterial colonization of their oral cavities; and elevated gingival tissue levels of the bone resorptive cytokine IL-1alpha . Alveolar bone loss is completely prevented by prophylactic antibiotic therapy . CONCLUSIONS: These experiments provide the first prospective evidence for the multiple risk factor hypothesis of periodontal disease, and validate the first animal model for early onset periodontitis in which both the microbiota and host response can be systematically manipulated . P/E-/- animals should be useful in testing the virulence of putative periodontal pathogens, in determining the role of host resistance factors in periodontitis, in exploring the proposed relationship(s) between infection mediated alveolar bone loss and systemic health disorders, and exploring their genetic relationships.

J Clin Periodontol, 2001 May, 28(5), 411 - 8
The effect of systemic antibiotics in the treatment of patients with recurrent periodontitis; Serino G et al.; BACKGROUND: Subjects with periodontal disease exist who either (i) respond poorly to initial mechanical therapy ("refractory" periodontitis) or (ii) fail to adopt adequate self-performed plaque control techniques and hence develop recurrent disease ("recurrent" periodontitis) at multiple sites during the supportive treatment phase (SPT) . Various systemic antibiotic regimens have been tried as adjuncts to the mechanical (re-) treatment of such "difficult to treat"-patients . While most studies indicated a positive outcome of the adjunctive therapy, some clinical investigators reported that this additional measure provided little or no benefit . AIM: The aim of the present investigation was to study the more long term effect of adjunctive antibiotic therapy in the re-treatment of patients with a well defined history of recurrent periodontitis . MATERIAL AND METHODS: 17 subjects with recurrent advanced periodontal disease were, following a baseline examination, subjected to non-surgical therapy including the use of systemic antibiotics (amoxicillin and metronidazole) . They were placed in a careful SPT program and re-examined after 1, 3 and 5 years . The examinations included both clinical and microbiological assessments . RESULTS: It was demonstrated that in subjects with advanced and recurrent periodontitis, re-treatment including (i) comprehensive scaling and root planing (SRP), (ii) systemic administration of antibiotics and (iii) meticulous supragingival plaque control by both mechanical and chemical means established periodontal conditions that in the short term (3 years) and in the majority of subjects could be properly maintained by traditional SPT measures . Between 3 and 5 years, however, only 5 of the 17 subjects exhibited stable periodontal attachment levels . CONCLUSIONS: Some deep pockets and furcations were most likely inadequately instrumented during the active treatment phase . Microorganisms residing in biofilms left in such locations were probably not sufficiently affected by the 2 weeks of adjunctive antibiotic therapy . It is suggested that removal of certain subgingival deposits, therefore, may require surgical intervention.

Infect Immun, 2001 Jun, 69(6), 4079 - 85
Anaerobic conditions induce expression of polysaccharide intercellular adhesin in Staphylococcus aureus and Staphylococcus epidermidis; Cramton SE et al.; Products of the intercellular adhesion (ica) operon in Staphylococcus aureus and Staphylococcus epidermidis synthesize a linear beta-1,6-linked glucosaminylglycan . This extracellular polysaccharide mediates bacterial cell-cell adhesion and is required for biofilm formation, which is thought to increase the virulence of both pathogens in association with prosthetic biomedical implants . The environmental signal(s) that triggers ica gene product and polysaccharide expression is unknown . Here we demonstrate that anaerobic in vitro growth conditions lead to increased polysaccharide expression in both S . aureus and S . epidermidis, although the regulation is less stringent in S . epidermidis . Anaerobiosis also dramatically stimulates ica-specific mRNA expression in ica- and polysaccharide-positive strains of both S . aureus and S . epidermidis . These data suggest a mechanism whereby ica gene expression and polysaccharide production may act as a virulence factor in an anaerobic environment in vivo.

J Food Prot, 2001 May, 64(5), 652 - 8
Decontamination of lettuce using acidic electrolyzed water; Koseki S et al.; The disinfectant effect of acidic electrolyzed water (AcEW), ozonated water, and sodium hypochlorite (NaOCl) solution on lettuce was examined . AcEW (pH 2.6; oxidation reduction potential, 1140 mV; 30 ppm of available chlorine) and NaOCl solution (150 ppm of available chlorine) reduced viable aerobes in lettuce by 2 log CFU/g within 10 min . For lettuce washed in alkaline electrolyzed water (AIEW) for 1 min and then disinfected in AcEW for 1 min, viable aerobes were reduced by 2 log CFU/g . On the other hand, ozonated water containing 5 ppm of ozone reduced viable aerobes in lettuce 1.5 log CFU/g within 10 min . It was discovered that AcEW showed a higher disinfectant effect than did ozonated water significantly at P < 0.05 . It was confirmed by swabbing test that AcEW, ozonated water, and NaOCI solution removed aerobic bacteria, coliform bacteria, molds, and yeasts on the surface of lettuce . Therefore, residual microorganisms after the decontamination of lettuce were either in the inside of the cellular tissue, such as the stomata, or making biofilm on the surface of lettuce . Biofilms were observed by a scanning electron microscope on the surface of the lettuce treated with AcEW . Moreover, it was shown that the spores of bacteria on the surface were not removed by any treatment in this study . However, it was also observed that the surface structure of lettuce was not damaged by any treatment in this study . Thus, the use of AcEW for decontamination of fresh lettuce was suggested to be an effective means of controlling microorganisms.

Environ Sci Technol, 2001 Mar 15, 35(6), 1118 - 26
Methyl tert-butyl ether biodegradation by indigenous aquifer microorganisms under natural and artificial oxic conditions; Landmeyer JE et al.; Microbial communities indigenous to a shallow groundwater system near Beaufort, SC, degraded milligram per liter concentrations of methyl tert-butyl ether (MTBE) under natural and artificial oxic conditions . Significant MTBE biodegradation was observed where anoxic, MTBE-contaminated groundwater discharged to a concrete-lined ditch . In the anoxic groundwater adjacent to the ditch, concentrations of MTBE were > 1 mg/L . Where groundwater discharge occurs, dissolved oxygen (DO) concentrations beneath the ditch exceeded 1.0 mg/Lto a depth of 1.5 m, and MTBE concentrations decreased to <1 microg/L prior to discharge . MTBE mass flux calculations indicate that 96% of MTBE mass loss occurs in the relatively small oxic zone prior to discharge . Samples of a natural microbial biofilm present in the oxic zone beneath the ditch completely degraded {U-14C}MTBE to {14C}CO2 in laboratory liquid culture studies, with no accumulation of intermediate compounds . Upgradient of the ditch in the anoxic, MTBE- and BTEX-contaminated aquifer, addition of a soluble oxygen release compound resulted in oxic conditions and rapid MTBE biodegradation by indigenous microorganisms . In an observation well located closest to the oxygen addition area, DO concentrations increased from 0.4 to 12 mg/L in <60 days and MTBE concentrations decreased from 20 to 3 mg/L . In the same time period at a downgradient observation well, DO increased from <0.2 to 2 mg/L and MTBE concentrations decreased from 30 to <5 mg/L . These results indicate that microorganisms indigenous to the groundwater system at this site can degrade milligram per liter concentrations of MTBE under natural and artificial oxic conditions.

Crit Rev Oral Biol Med, 2001, 12(2), 179 - 85
Immunodominant antigens in periodontal disease: a real or illusive concept?
Podmore M, Ebersole JL, Kinane DF.
The humoral arm of the immune system provides protection from many medically significant pathogens . The antigenic epitopes of the pathogens which induce these responses, and the subsequent characteristics of the host response, have been extensively documented in the medical literature, and in many cases have resulted in the development and implementation of effective vaccines or diagnostic tests . There is a substantial body of literature on the humoral immune response in periodontal disease, which is targeted at micro-organisms present within periodontal pockets . However, the significance and specificity of the immune response in periodontal disease have proved difficult to elucidate, due to the large number of potential pathogens in the plaque biofilm and the apparent commensal nature of many of these opportunistic pathogens . This review addresses our current knowledge of the approaches and strategies which have been used to elucidate and examine the concept of immunodominant antigens in medical infections and, more recently, periodontal disease . An identification/understanding of the immunodominant antigens would be informative with respect to: (i) the relative importance of the implicated pathogens, (ii) new approaches to immunological diagnosis, (iii) specific bacterial virulence determinants, (iv) natural protective responses, and (v) the selection of potential vaccine candidate antigens . We conclude that immunodominance of antigens in periodontal disease may be relevant to our understanding of periodontal disease pathogenesis, but due to the complexity and diversity of the 'pathogenic microbial ecology', it is currently an enigmatic topic requiring a multidisciplinary approach linking clinical, microbiological, and immunological investigations . We also conclude, after assessing the literature available on the topic of immunodominance, that it is a term that, if used, must be clearly defined and understood, since it is often used loosely, leading to a general misinterpretation by readers of oral and medical literature.

Water Res, 2001 Jun, 35(8), 2029 - 37
Clogging of a limestone fracture by stimulating groundwater microbes; Ross N et al.; Biological clogging is promoted in aquifers either to contain or to remediate groundwater . In this study, an apparatus able to detect small changes in hydraulic conductivity (K) was developed to measure the clogging of a single fracture in limestone, following microbial stimulation . The fracture had a 2.5 mm2 section and was 50 cm long . Prior to the inoculation of the limestone, the sequencing of representative clones from 16S rRNA genes isolated from groundwater, showed significant affiliation with Cytophaga spp., Arcobacter spp . and Rhizobium spp . These bacteria are known to secrete extracellular polymeric substances and form biofilms . When nutrients were added to the inoculated limestone, a decrease in K occurred after 8 days, reaching 0.8% of its initial value after 22 days (Kfi = 340 cm min-1) . This study showed that a stimulation of indigenous microbes from groundwater effectively clogged a macrofracture in limestone, suggesting the potential application of biobarriers in fractured rock aquifers.

Int J Antimicrob Agents, 2001 May, 17(5), 351 - 6
Airway biofilm disease; Kobayashi H; This paper describes the formation of biofilm, its characteristics, its effect on the host cells and treatment of the condition . The airway biofilm diseases are known to be intractable and persistent; also, auto-immune factors play a role in the development of the symptoms . The characteristic of airway biofilm diseases is of a harmful auto-immune reaction occurring along with the symptoms which are different from the simple acute infection interaction between microorganism and host in an acute airway infection.

Trends Microbiol, 2001 May, 9(5), 222 - 7
The biofilm matrix--an immobilized but dynamic microbial environment; Sutherland IW; The biofilm matrix is a dynamic environment in which the component microbial cells appear to reach homeostasis and are optimally organized to make use of all available nutrients . The major matrix components are microbial cells, polysaccharides and water, together with excreted cellular products . The matrix therefore shows great microheterogeneity, within which numerous microenvironments can exist . Although exopolysaccharides provide the matrix framework, a wide range of enzyme activities can be found within the biofilm, some of which will greatly affect structural integrity and stability.

J Colloid Interface Sci, 2001 May 1, 237(1), 54 - 61
Atomic Force Microscopy Study of the Adhesion of Saccharomyces cerevisiae; Bowen WR et al.; An atomic force microscope (AFM) has been used to quantify directly the adhesion of metabolically active Saccharomyces cerevisiae cells at a hydrophilic mica surface, a mica surface with a hydrophobic coating, and a protein-coated mica surface in an aqueous environment . The measurements used "cell probes" constructed by immobilizing a single cell at the apex of a tipless AFM cantilever . Adhesion was quantified from force-distance data for the retraction of the cell from the surface . The data indicated stretching and sequential bond-breaking as the cell probe was retracted from all of the surfaces . Detailed studies were made for physiologically active cells, which were shown to have different adhesion properties to glutaraldehyde-treated cells . Greatest cell adhesion was measured at the hydrophobic surface . Prior adsorption of a bovine serum albumin protein layer at the hydrophilic surface did not significantly affect cell adhesion . Changes in yeast surface hydrophobicity and zeta-potential with yeast cell age were correlated with differences in adhesion . Cells from the stationary phase adhered most strongly to a mica surface . Time of surface contact was demonstrated to be important . Both the force needed to detach a cell from a hydrophilic mica surface and the length of the adhesive interaction increased after 5 min contact . The AFM cell probe technique gives unique insights into primary colonization events in biofilm formation . It will continue to aid both fundamental studies and the assessment of new procedures that are designed to lower cell adhesion at surfaces relevant to biotechnology, medicine, and dentistry

Cornea, 2001 May, 20(4), 362 - 5
The detection of bacteria and bacterial biofilms in punctal plug holes; Sugita J et al.; PURPOSE: An investigation into bacterial biofilm formation on and in punctal plugs . METHODS: The study involved 21 patients with severe dry eye whose puncta were occluded by the use of punctal plugs . Of these, 15 had Sjogren's syndrome, 3 had non-Sjogren's syndrome, 2 had Stevens-Johnson syndrome, and 1 had graft-versus-host disease . From 17 of the 21 subjects, 18 samples of material were extracted from the holes of the punctal plugs (16 unilateral and 1 bilateral) and were subjected to enrichment culture . Nineteen punctal plugs were removed and processed for electron microscopy: 15 by scanning electron microscopy, and 4 by transmission electron microscopy . RESULTS: Positive cultures were found in 8 of 18 (44%) samples of the material extracted from the holes of punctal plugs . In six of these eight cases (75%) the cultured bacterial species was Staphylococcus epidermidis, whereas in the other two cases (25%) it was S . aureus . In 8 of the 15 punctal plugs examined by scanning electron microscopy and in the material extracted from 1 plug that was examined by transmission electron microscopy, there was clear evidence of bacterial colonization . CONCLUSION: Careful observation of patients with punctal plugs is important . If material accumulates in or on a punctal plug, it may contain bacteria and may form a bacterial biofilm . In these cases, replacement of the plug, clearing of the hole, or an alternative treatment should be considered.

Water Res, 2001 May, 35(7), 1730 - 8
The formation of malodorous dimethyl oligosulphides in treated groundwater: the role of biofilms and potential precursors; Franzmann PD et al.; Water distributed from the Wanneroo Groundwater Treatment Plant intermittently contains dimethyl trisulphide (DMTS) . The compound is responsible for a "swampy odour" in the water . DMTS production from potential precursors was insignificant in the absence of biofilms when compared with DMTS production from precursors in the presence of biofilms in a biofilm reactor . Greatest dimethyl disulphide (DMDS) and DMTS production (> 3000 ng L-1 DMTS) occurred in the reactors when supplied with methane thio-containing compounds, such as methionine, S-methyl cysteine and methyl-3-(methylmercapto)-propionate . Abiotic DMTS production from oligosulphides also occurred through the addition of the methylating agents, methyl iodide or methyl-p-toluene sulphonate . Significant DMTS production also occurred with Wanneroo water that contained added omega-thio-containing compounds such as cysteine (1400 ng L-1 DMTS), and 3-mercaptopropionate (210 ng L-1) . Biomethylation, a ubiquitous response by microorganisms for the detoxification of toxic compounds, generated DMDS/TS from biofilm oligosulphides . Biofilms exposed to the toxic compounds selenate or 2,4,6-trichlorophenol methylated oligosulphides in addition to the toxins . Sodium sulphide also stimulated DMTS production . Easily Biodegradable Dissolved Organic Carbon (BDOC) probably contributed indirectly to DMTS production by the biofilms, although whether this was a result of its stimulation of greater microbial activity or consumption of oxygen, or both, remains unresolved . Stagnation of water in the biofilm reactors also increased DMTS production, which was concomitant with depletion of oxygen concentrations in the bulk water . Many processes, such as degradation of methane thio-containing compounds, methylation of sulphides and oligosulphides, and changes in contributions of different metabolic pathways upon depletion of oxygen concentrations upon water stagnation, probably contribute simultaneously to "swampy odour" production in the distribution system.

J Periodontol, 2001 Mar, 72(3), 401 - 10
Evaluation of ultrasonic scaling unit waterline contamination after use of chlorine dioxide mouthrinse lavage; Wirthlin MR et al.; BACKGROUND: An infection control problem in dental operatories which is not fully controlled is waterline contamination by heterotrophic mesophilic bacteria . These bacteria are present in water supplies as a planktonic phase and adhere to the lumen of tubings as a biofilm comprised of their external cell surface glycocalyx and by production of extracellular carbohydrate polymers . The adherent film is most difficult to remove . The accumulated planktonic phase can be reduced significantly by flushing water from the lines before use in patient treatment, but will return when the equipment is idle through the accumulation of more planktonic phase and by slough of the biofilm surface-adsorbed phase not yet enmeshed in the carbohydrate matrix . Chlorine dioxide has antimicrobial activity against many bacteria, spores, and viruses . It is used in water supply treatment as a disinfectant and slime preventive and has an advantage over chlorine in that carcinogenic trihalomethanes are not generated . METHODS: This study compared use of phosphate buffer-stabilized chlorine dioxide (0.1%) mouthrinse as a lavage in ultrasonic dental scaler units with the use of tap water as a control . Sterile water flushed through the units onto heterotrophic plate count (HPC) sampler plates was cultured 7 days at room temperature and colonies were counted at 12x . One test and one control unit were used for biopsy of internal tubing and scanning electron microscopy imaging . RESULTS: The HPC counts, in colony forming units (CFU)/ml, were reduced 3- to 5-fold by flushing tap water through the units, but they returned after units were idle overnight . When phosphate-buffered chlorine dioxide mouthrinse was used as a lavage, CFU/ml were reduced 12- to 20-fold . Holding chlorine dioxide in waterlines overnight reduced recurrent buildup compared to water (P <0.05) . Scanning electron microscopy images indicated a significant reduction of biofilm coverage by chlorine dioxide as compared to water (P<0.001) . CONCLUSIONS: Phosphate-buffered chlorine dioxide mouthrinse was effective in these short-term trials for control of waterline contamination in ultrasonic dental scaling units . It should prove as useful in dental professional waterline applications as it has in industrial uses for biofilm control.

J Periodontol, 2001 Mar, 72(3), 393 - 400
Dental unit waterline contamination and its possible implications during periodontal surgery; Putnins EE et al.; BACKGROUND: Dental unit waterline contamination has become a concern to clinical dentistry . This concern arises from the fact that bacteria sloughed from established biofilms in dental unit waterlines increase heterotrophic bacteria counts in water exiting these units . METHODS: Scanning microscopy and bacterial viability staining were used to examine the sessile and planktonic biofilm present in dental unit waterlines and water samples, respectively . In addition, the limulus amebocyte assay was used to measure the lipopolysaccharide (LPS) levels in water samples . RESULTS: All dental unit waterlines were coated with a well-established biofilm made up of filamentous and bacillus-like microorganisms . Water samples collected from these dental units contained high numbers of individual bacteria and bacterial aggregates . A viability staining technique identified significantly more bacteria in water than could be cultured, and 64% of the total bacterial population stained as nonvital . Since the bacterial load (viable and nonviable) was high, we examined the LPS in dental unit water samples . The mean LPS levels in water collected from high-speed and air/water lines in use were 480 and 1,008 endotoxin units (EU)/ml . This was significantly higher than the mean level of 66 EU/ml found in water samples collected from adjacent clinic sinks . The LPS level at the start of the day (2,560 EU/ml) was reduced by 70% with 1 minute of flushing (800 EU/ml) . Flushing times of 5 and 10 minutes were not able to reduce LPS levels to zero . CONCLUSION: The presence of high heterotrophic bacterial counts, sloughing biofilm, and high LPS levels are discussed in relation to patient risk and periodontal wound healing biology.

J Calif Dent Assoc, 2000 Mar, 28(3), 185 - 93
Responsible use of antimicrobials in periodontics; Jorgensen MG et al.; New products and treatment modalities for the management of periodontal disease continue to offer the clinician a large number of choices, many of which involve antimicrobials . Specific pathogenic bacteria play a central role in the etiology and pathogenesis of destructive periodontal disease . Under suitable conditions, periodontal pathogens colonize the subgingival environment and are incorporated into a tenacious biofilm . Successful prevention and treatment of periodontitis is contingent upon effective control of the periodontopathic bacteria . This is accomplished by professional treatment of diseased periodontal sites and patient-performed plaque control . Attention to community factors, such as water contamination and bacterial transmission among family members, facilitates preventive measures and early treatment for the entire family . Subgingival mechanical debridement, with or without surgery, constitutes the basic means of disrupting the subgingival biofilm and controlling pathogens . Appropriate antimicrobial agents that can be administered systemically (antibiotics) or via local delivery (povidone-iodine) may enhance eradication or marked suppression of subgingival pathogens . Microbiological testing may aid the clinician in the selection of the most effective antimicrobial agent or combination of agents . Understanding the benefits and limitations of antibiotics and antiseptics will optimize their usefulness in combating periodontal infections.

J Mass Dent Soc, 2000 Autumn, 49(3), 10 - 3
Quantifiable risk in dentistry--a letter to the profession; Neiburger EJ; Recent attention to certain worries such as the AIDS "epidemic," biofilms in dental unit water lines, and hepatitis C have resulted in unbalanced and often inappropriate action by dentists and public health authorities . These actions include exaggerating, underestimating, and ignoring risks in the dental environment . To be effective and responsible practitioners, we must recognize reality and proportion, concentrate resources on the greatest problems, and seek dependable epidemiology . Infection control issues are an important application for this form of evidence-based science.

Microbiology, 2001 May, 147(Pt 5), 1383 - 91
Assessment of GFP fluorescence in cells of Streptococcus gordonii under conditions of low pH and low oxygen concentration; Hansen MC et al.; Use of green fluorescent protein (GFP) as a molecular reporter is restricted by several environmental factors, such as its requirement for oxygen in the development of the fluorophore, and its poor fluorescence at low pH . There are conflicting data on these limitations, however, and systematic studies to assess the importance of these factors for growing bacterial cultures are lacking . In the present study, homogeneous expression of the gfpmut3* gene directed by a synthetic constitutive lactococcal promoter was demonstrated in batch cultures and in biofilms of Streptococcus gordonii DL1 . A lower limit of oxygen concentration for maturation of the GFP fluorophore was determined: fluorescence was emitted at 0.1 p.p.m . dissolved oxygen (in conventionally prepared anaerobic media lacking reducing agents), whereas no fluorescence was detected in the presence of 0.025 p.p.m . dissolved oxygen (obtained by addition of L-cysteine as reducing agent) . When an anaerobically grown (non-fluorescent) >50 microm thick biofilm was shifted to aerobic conditions, fluorescence could be detected within 4 min, reaching a maximum over the next 16 min . It was not possible to detect any fluorescence gradients (lateral or vertical) within the >50 microm thick biofilm, and fluorescence development after the shift to aerobic conditions occurred throughout the biofilm (even at the substratum) . This suggests that oxygen gradients, which might result in reduced GFP fluorescence, did not exist in the >50 microm thick biofilm of this organism . Production of lactic acid and the subsequent acidification in batch cultures of S . gordonii DL1 led to a decrease in fluorescence intensity . However, severe pH reduction was prevented when the bacterium was grown as a biofilm in a flowcell, and a homogeneous distribution of a strong fluorescence signal was observed . These findings show that GFP can be applied to studies of oxygen-tolerant anaerobic bacteria, that densely packed, flowcell-grown biofilms of S . gordonii do not develop oxygen gradients inhibitory to GFP fluorescence development, and that the often transient nature of GFP fluorescence in acid-producing bacteria can be overcome in flowcells, probably by the elimination of metabolic by-product accumulation.

Appl Environ Microbiol, 2001 May, 67(5), 2319 - 25
Shewanella putrefaciens adhesion and biofilm formation on food processing surfaces; Bagge D et al.; Laboratory model systems were developed for studying Shewanella putrefaciens adhesion and biofilm formation under batch and flow conditions . S . putrefaciens plays a major role in food spoilage and may cause microbially induced corrosion on steel surfaces . S . putrefaciens bacteria suspended in buffer adhered readily to stainless steel surfaces . Maximum numbers of adherent bacteria per square centimeter were reached in 8 h at 25 degrees C and reflected the cell density in suspension . Numbers of adhering bacteria from a suspension containing 10(8) CFU/ml were much lower in a laminar flow system (modified Robbins device) (reaching 10(2) CFU/cm(2)) than in a batch system (reaching 10(7) CFU/cm(2)), and maximum numbers were reached after 24 h . When nutrients were supplied, S . putrefaciens grew in biofilms with layers of bacteria . The rate of biofilm formation and the thickness of the film were not dependent on the availability of carbohydrate (lactate or glucose) or on iron starvation . The number of S . putrefaciens bacteria on the surface was partly influenced by the presence of other bacteria (Pseudomonas fluorescens) which reduced the numbers of S . putrefaciens bacteria in the biofilm . Numbers of bacteria on the surface must be quantified to evaluate the influence of environmental factors on adhesion and biofilm formation . We used a combination of fluorescence microscopy (4',6'-diamidino-2-phenylindole staining and in situ hybridization, for mixed-culture studies), ultrasonic removal of bacteria from surfaces, and indirect conductometry and found this combination sufficient to quantify bacteria on surfaces.

Water Res, 2001 Apr, 35(6), 1624 - 6
Helicobacter sp . recovered from drinking water biofilm sampled from a water distribution system; Park SR et al.; Workers examining the transmission route(s) and reservoir(s) of infection for Helicobacter pylori have postulated several environmental reservoirs for the organism, including water . Such work has, to date, concentrated on the bulk liquid in drinking water systems rather than on biofilms . Previous investigations by the authors have suggested biofilms in water distribution systems are a possible reservoir of infection . This current study comprised of an analysis of a section of cast iron mains distribution pipe removed from an urban environment in the north-east of Scotland during routine maintenance work . Immediately upon removal of the pipe section, the interior lumen was swabbed to remove the biofilm layer . Subsequent analysis for the presence of Helicobacter DNA using a nested PCR approach produced a positive result . This data provides the first evidence for the existence of Helicobacter in biofilms found in water distribution systems anywhere in the world.

Water Res, 2001 Apr, 35(6), 1379 - 86
Methane microprofiles in a sewage biofilm determined with a microscale biosensor; Damgaard LR et al.; Microprofiles of the methane concentration in a 3.5-mm-thick sewage outlet biofilm were measured at high spatial and temporal resolution using a microscale biosensor for methane . In the freshly collected biofilm, methane was building up to a concentration of 175 mumol l-1 at 3 mm depth with a total methanogenesis of 0.14 mumol m-2 s-1, as compared to an aerobic respiration (including methane oxidation) of 0.80 mumol m-2 s-1 . A model biofilm was established by homogenisation of an in situ biofilm and 12 days of incubation with surplus sodium acetate . The homogenised biofilm was able to maintain 50% of the methanogenic activity in the absence of external electron donor . Oxygen had only a minor effect on the methane production, but aerobic respiration consumed a substantial part of the produced methane and was thus an important control on methane export from the biofilm . A concentration of 2 mmol l-1 nitrate was shown to inhibit methanogenesis only in the upper layer of the biofilm, whereas a further addition of 2 mmol l-1 sulphate inhibited methanogenesis in the entire biofilm . The study demonstrated the power of the methane microsensor in the study of microhabitats with concurrent production and consumption of methane.

J Clin Pediatr Dent, 2000 Spring, 24(3), 237 - 43
Effects of three different infant dentifrices on biofilms and oral microorganisms; Modesto A et al.; The purpose of this work was to evaluate the effects of infant dentifrices: A--with lactoperoxidase, glucose oxidase and lactoferrin; B--with 1100 ppm of NaF and sodium lauryl sulfate; C--with extract of calendula . The dentifrices were test on biofilms formed in vitro from saliva and dental plaque of infants, using reference strains A . viscosus (ATCC 43146); C . albicans (ATCC 51501); L . casei (ATCC 4646); S . mitis (ATCC 49456); S . mutans (ATCC 25175); S . oralis (ATCC 35037); S . sanguis (ATCC 10586); S . sobrinus (ATCC 27609) and isolated clinically microorganisms C . albicans, S . mitis, S . mutans, S . oralis, S . sanguis, S . sobrinus and Lactobacillus sp . Twenty infants were chosen, who were beginning treatment at the Infants Clinic of the Pediatric Dentistry Department, Federal University of Rio de Janeiro . A pool of unstimulated saliva and a pool of dental plaque were collected from which biofilms were produced . Supernatants from each dentifrice were prepared and concentrated and diluted solutions of the dentifrices and a control sterile diluent were tested against the biofilms produced, for 1 and 3 minutes, and against the microorganisms . The results were statistically analyzed by the ANOVA and Tukey Test . After the exposure of the biofilms produced both from saliva and from dental plaque, to the dentifrice B concentrated and 1/2, for 1 and 3 minutes, the viable microorganisms count (CFU/ml), compared to the controls, was significantly reduced (p < 0.05) . However, exposure to the dentifrices A and C concentrated and dentifrice B 1/4 and 1/8, for 1 and 3 minutes, was not significantly lethal to the biofilms . The dentifrices A and C, either concentrated or diluted (1/2 to 1/128) and the dentifrice B in the dilutions 1/16 to 1/128 did not have an antimicrobial effect on any microorganism evaluated . For all the microorganisms evaluated, the dentifrice B concentrated and in the 1/2 dilution showed a significant antimicrobial effect, when compared with the control (p < 0.05).

FEMS Microbiol Lett, 2001 Apr 13, 197(2), 151 - 7
Characterization and expression of secA in Mycobacterium avium; Limia A et al.; Mycobacterium avium is both a pathogen that infects several hosts such as humans, pigs, and birds, as well as a microorganism that is encountered in environmental sources (soil and water) . Protein secretion by the bacterium is likely to influence its ability to overcome adverse and competitive conditions both within or outside the host . Using a combination of cloning and information available in the databank, we characterized the secA gene from M . avium, encoding for a major preprotein translocase subunit associated with the secretion system of prokaryotics . In addition, we cloned the secA promoter sequence in a reporter construct upstream of a promoterless gfp . It was determined that the secA of M . avium shares large homology with the secA of Mycobacterium tuberculosis but not with secA of Mycobacterium leprae . secA expression was determined to be greater at logarithmic growth phase although it was also expressed at low levels during the stationary phase . secA expression was also observed when the bacteria were incubated in water as well as within human monocyte-derived macrophages and in conditions that are associated with biofilm formation . Future evaluation of the sec pathway in M . avium might provide important information about secreted proteins that are required for survival in different environments.

Ann N Y Acad Sci, 1999 Jun 18, 875, 84 - 104
Physico-chemical and mass transfer considerations in microencapsulation; Goosen MF; To gain better insight into mass transfer problems in encapsulated cell systems requires a combination of experimental investigations and mathematical modeling . Specific mass transfer studies are reviewed including oxygen transfer in immobilized animal cell culture bioreactors, modeling of polymer droplet formation and encapsulated animal cell growth, and growth of somatic tissue encapsulated in alginate using electrostatics . Special emphasis is given to electrostatic droplet generation for cell immobilization.

Can J Microbiol, 1999 Mar, 45(3), 235 - 41
Removal of phenolic compounds from a petrochemical effluent with a methanogenic consortium; Charest A et al.; A methanogenic consortium was used to degrade phenol and ortho- (o-) cresol from a specific effluent of a petrochemical refinery . This effluent did not meet the local environmental regulations for phenolic compounds (178 mg/L), oils and greases (61 mg/L), ammoniacal nitrogen (75 mg/L) or sulfides (3.2 mg/L) . The consortium, which degrades phenol via its carboxylation to benzoic acid, was progressively adapted to the effluent . Despite the very high effluent toxicity (EC50 of 2% with Microtox), the adapted consortium degraded 97% of 156 mg/L phenol in the supplemented effluent after 13 days in batch cultures (serum bottle) . The addition of proteose peptone to the effluent is essential for phenol degradation . o-cresol was also transformed but not meta- or para-cresols . A continuous flow fixed-film anaerobic bioreactor was developed with the consortium . Treating the effluent with the bioreactor reduced phenol and phenolic compounds concentrations by 97 and 83%, respectively, for a hydraulic residence time of 6 h . This treatment also reduced by about half the effluent toxicity . Oils and greases and ammoniacal nitrogen were not affected . Similar microbiological forms were observed in serum bottles and in the bioreactors with or without the petrochemical effluent . These results indicate that this methanogenic consortium can treat efficiently the phenolic compounds in this specific petrochemical effluent.

J Immunother, 1999 Jul, 22(4), 299 - 307
Large-scale production of natural cytokines during activation and expansion of human T lymphocytes in hollow fiber bioreactor cultures; Lamers CH et al.; We studied the large-scale production of a variety of natural cytokines during the activation and expansion of human T lymphocytes in a hollow fiber bioreactor culture system . Peripheral blood mononuclear cells (PBMC) were activated using phytohemagglutinin plus recombinant interleukin-2 (IL-2) . Phytohemagglutinin was either present in the hollow fiber bioreactor during the entire 15-16-day culture period or only during the 20-h preactivation of the PBMC in culture bags . The expanding T lymphocytes were mainly CD3+,8+ and exerted maximal natural, activated, bispecific monoclonal antibody-redirected and lectin-dependent cytolytic activities between days 9 and 13 of culture . IL-1 and IL-4 were only produced in low amounts . IL-8 and lymphotoxin were primarily produced during the first week of culture . Harvest of the hollow fiber bioreactor culture supernatant at the time of peak cytokine concentration would have yielded per 10(8) PBMC input between 3.7 and 4.9 micrograms of IL-8 (at days 2 or 3), and between 0.02 and 0.5 microgram of lymphotoxin (at days 6 or 7) . Tumor necrosis factor-alpha and IL-6 were produced during the entire culture period of 15 or 16 days: per 10(8) PBMC input, between 0.1 and 0.4 microgram of tumor necrosis factor-alpha (at days 2 or 3) and between 0.03 and 0.5 microgram of IL-6 (at days 15 or 16) . Production of interferon-gamma and granulocyte-macrophage colony-stimulating factor started from initiation of cultures onwards to reach peak levels at the end of the 15- or 16-day culture period, yielding at that time between 2.1 and 17.7 micrograms/ml of interferon-gamma and between 0.4 and 4.2 micrograms of granulocyte-macrophage colony-stimulating factor per 10(8) PBMC input . The production of tumor necrosis factor-alpha, IL-6, interferon-gamma, and granulocyte-macrophage colony-stimulating factor was proportional to the extent of lymphocyte multiplication . These results demonstrate the usefulness of hollow fiber bioreactor cultures to produce natural cytokines during the activation and expansion of predominantly CD3+,8+ T lymphocytes.

Biotechnol Bioeng, 1999 Sep 5, 64(5), 580 - 9
Cardiac tissue engineering: cell seeding, cultivation parameters, and tissue construct characterization; Carrier RL et al.; Cardiac tissue engineering has been motivated by the need to create functional tissue equivalents for scientific studies and cardiac tissue repair . We previously demonstrated that contractile cardiac cell-polymer constructs can be cultivated using isolated cells, 3-dimensional scaffolds, and bioreactors . In the present work, we examined the effects of (1) cell source (neonatal rat or embryonic chick), (2) initial cell seeding density, (3) cell seeding vessel, and (4) tissue culture vessel on the structure and composition of engineered cardiac muscle . Constructs seeded under well-mixed conditions with rat heart cells at a high initial density ((6-8) x 10(6) cells/polymer scaffold) maintained structural integrity and contained macroscopic contractile areas (approximately 20 mm(2)) . Seeding in rotating vessels (laminar flow) rather than mixed flasks (turbulent flow) resulted in 23% higher seeding efficiency and 20% less cell damage as assessed by medium lactate dehydrogenase levels (p < 0.05) . Advantages of culturing constructs under mixed rather than static conditions included the maintenance of metabolic parameters in physiological ranges, 2-4 times higher construct cellularity (p &le 0.0001), more aerobic cell metabolism, and a more physiological, elongated cell shape . Cultivations in rotating bioreactors, in which flow patterns are laminar and dynamic, yielded constructs with a more active, aerobic metabolism as compared to constructs cultured in mixed or static flasks . After 1-2 weeks of cultivation, tissue constructs expressed cardiac specific proteins and ultrastructural features and had approximately 2-6 times lower cellularity (p < 0.05) but similar metabolic activity per unit cell when compared to native cardiac tissue .

Appl Biochem Biotechnol, 1999 Spring, 77-79, 455 - 71
Bioconversion of mixed solids waste to ethanol; Nguyen QA et al.; A mixed solids waste (MSW) feedstock, comprising construction lumber waste (35% oven-dry basis), almond tree prunings (20%), wheat straw (20%), office waste paper (12.5%), and newsprint (12.5%), was converted to ethanol via dilute-acid pretreatment followed by enzymatic hydrolysis and yeast fermentation . The MSW was pretreated with dilute sulfuric acid (0.4% w/w) at 210 degrees C for 3 min in a 4-L steam explosion reactor, then washed with water to recover the solubilized hemicellulose . The digestibility of water-washed, pretreated MSW was 90% in batch enzymatic hydrolysis at 66 FPU/g cellulose . Using an enzyme-recycle bioreactor system, greater than 90% cellulose hydrolysis was achieved at a net enzyme loading of about 10 FPU/g cellulose . Enzyme recycling using membrane filtration and a fed-batch fermentation technique is a promising option for significantly reducing the cost of enzyme in cellulose hydrolysis . The hexose sugars were readily fermentable using a Saccharomyces cerevisiae yeast strain that was adapted to the hydrolysate . Solid residue after enzyme digestion was subjected to various furnace experiments designed to assess the fouling and slagging characteristics . Results of these analyses suggest the residue to be of a low to moderate slagging and fouling type if burned by itself.

Biotechnol Bioeng, 1999 Aug 20, 64(4), 459 - 77
Integrated two-liquid phase bioconversion and product-recovery processes for the oxidation of alkanes: process design and economic evaluation
Mathys RG, Schmid A, Witholt B.
Pseudomonas oleovorans and recombinant strains containing the alkane oxidation genes can produce alkane oxidation products in two-liquid phase bioreactor systems . In these bioprocesses the cells, which grow in the aqueous phase, oxidize apolar, non-water soluble substrates . The apolar products typically accumulate in the emulsified apolar phase . We have studied both the bioconversion systems and several downstream processing systems to separate and purify alkanols from these two-liquid phase media . Based on the information generated in these studies, we have now designed bioconversion and downstream processing systems for the production of 1-alkanols from n-alkanes on a 10 kiloton/yr scale, taking the conversion of n-octane to 1-octanol as a model system . Here, we describe overall designs of fed-batch and continuous-fermentation processes for the oxidation of octane to 1-octanol by Pseudomonas oleovorans, and we discuss the economics of these processes . In both systems the two-liquid phase system consists of an apolar phase with hexadecene as the apolar carrier solvent into which n-octane is dissolved, while the cells are present in the aqueous phase . In one system, multiple-batch fermentations are followed by continuous processing of the product from the separated apolar phase . The second system is based on alkane oxidation by continuously growing cultures, again followed by continuous processing of the product . Fewer fermentors were required and a higher space-time-yield was possible for production of 1-octanol in a continuous process . The overall performance of each of these two systems has been modeled with Aspen software . Investment and operating costs were estimated with input from equipment manufacturers and bulk-material suppliers . Based on this study, the production cost of 1-octanol is about 7 US$kg-1 when produced in the fed-batch process, and 8 US$kg-1 when produced continuously . The comparison of upstream and downstream capital costs and production costs showed significantly higher upstream costs for the fed-batch process and slightly higher upstream costs for continuous fermentation . The largest cost contribution was due to variable production costs, mainly resulting from media costs . The organisms used in these systems are P . putida alk+ recombinants which oxidize alkanes, but cannot oxidize the resulting alkanols further . Hence, such cells need a second carbon source, which in these systems is glucose . Although the continuous process is about 10% more expensive than the fed-batch process, improvements to reduce overall cost can be achieved more easily for continuous than for fed-batch fermentation by decreasing the dilution rate while maintaining near constant productivity . Improvements relevant to both processes can be achieved by increasing the biocatalyst performance, which results in improved overall efficiency, decreased capital investment, and hence, decreased production cost .

Biotechnol Bioeng, 1999 Aug 20, 64(4), 452 - 8
Membrane sparger in bubble column, airlift, and combined membrane-ring sparger bioreactors
Poulsen BR, Iversen JJ.
The bubble column and the two internal loop airlift reactors (riser/downcomer area ratios of 0.11 and 0.58) characterized in this study were equipped with a rubber membrane sparger, which produced small bubbles, giving high mass transfer coefficients . The low mixing intensity in the bubble column was increased by an order of magnitude in the airlift reactors . We designed a novel aeration and mixing system by adding a ring sparger to the membrane sparger in the bubble column and maintained the advantages of both airlift configuration (good mixing properties) and bubble column configuration (efficient aeration, without any internal constructions) . The combined membrane-ring sparger system has unique features with respect to the efficiency of utilization of substrate gasses and energy . Model experiments showed that the small bubbles from the membrane sparger do not coalesce with the large bubbles from the ring sparger . If different gases were added through the two spargers it was possible to transfer a hazardous or expensive gas quantitatively to the liquid through the membrane sparger (dual sparging mode) . In the combined membrane-ring sparger system the energy input for mixing and mass transfer is divided . Therefore, the energy consumption can be minimized if the flow distribution of air through the membrane and ring sparger is controlled by the oxygen demand and the inhomogeneity of the culture, respectively (split sparging mode) . The dual sparging mode was used for mass production of the alga Rhodomonas sp . as the first step in aquatic food chains . Avoiding mechanical parts removes an important risk of malfunction, and a continuous culture could be maintained for more than 8 months .

Biotechnol Bioeng, 1999 Jul 5, 64(1), 14 - 26
Characterization of bimodal cell death of insect cells in a rotating-wall vessel and shaker flask
Cowger NL, O'Connor KC, Hammond TG, Lacks DJ, Navar GL.
In previous publications, we reported the benefits of a high-aspect rotating-wall vessel (HARV) over conventional bioreactors for insect-cell cultivation in terms of reduced medium requirements and enhanced longevity . To more fully understand the effects that HARV cultivation has on longevity, the present study characterizes the mode and kinetics of Spodoptera frugiperda cell death in this quiescent environment relative to a shaker-flask control . Data from flow cytometry and fluorescence microscopy show a greater accumulation of apoptotic cells in the HARV culture, by a factor of at least 2 at the end of the cultivation period . We present a kinetic model of growth and bimodal cell death . The model is unique for including both apoptosis and necrosis, and further, transition steps within the two pathways . Kinetic constants reveal that total cell death is reduced in the HARV and the accumulation of apoptotic cells in this vessel results from reduced depletion by lysis and secondary necrosis . The ratio of early apoptotic to necrotic cell formation is found independent of cultivation conditions . In the model, apoptosis is only well represented by an integral term, which may indicate its dependence on accumulation of some factor over time; in contrast, necrosis is adequately represented with a first-order term . Cell-cycle analysis shows the percent of tetraploid cells gradually decreases during cultivation in both vessels . For example, between 90% and 70% viability, tetraploid cells in the HARV drop from 43 +/- 1% to 24 +/- 4% . The data suggests the tetraploid phase as the likely origin for apoptosis in our cultures . Possible mechanisms for these changes in bimodal cell death are discussed, including hydrodynamic forces, cell-cell interactions, waste accumulation, and mass transport . These studies may benefit insect-cell cultivation by increasing our understanding of cell death in culture and providing a means for further enhancing culture longevity .

Biotechnol Bioeng, 1999 Jun 5, 63(5), 601 - 11
Epoxidation of 1,7-octadiene by pseudomonas oleovorans in a membrane bioreactor
Doig SD, Boam AT, Livingston AG, Stuckey DC.
A growing cell culture of Pseudomonas oleovorans was used to biotransform 1,7-octadiene to 1,2-epoxy-7,8-octene in a continuous-flow bioreactor with an external membrane module . A dense silicone rubber membrane was used to contact an organic phase, containing both the reactant (1,7-octadiene) and the growth substrate (heptane), with an aqueous biomedium phase containing the biocatalyst . Heptane and octadiene delivery to the aqueous phase, and epoxide extraction into the solvent, occurred by diffusion across the dense membrane under a concentration-driving force . In addition, a liquid feed of heptane and octadiene was pumped directly into the bioreactor to increase the rate of delivery of these compounds to the aqueous phase . In this system 1,2-epoxy-7,8-octene accumulated in a pure solvent phase, thus, product recovery problems associated with emulsion formation were avoided . Furthermore, no phase breakthrough of either liquid across the membrane was observed . In this system, the highest volumetric productivity obtained was 30 U.L-1, and this was achieved at a dilution rate of 0.07 h-1, 70 m2 . m-3 of membrane area, and a steady-state biomass concentration of 2 . 5 g.L-1 . The system was stable for over 1250 h . Decreasing the dilution rate led to an increased biomass concentration, however, the specific activity was significantly reduced, and therefore, an optimal dilution rate was determined at 0.055 h-1 .

Biotechnol Bioeng, 1999 Jun 5, 63(5), 593 - 600
Studies on the respiration rate of free and immobilized cells of cephalosporium acremonium in cephalosporin C production
Araujo ML, Giordano RC, Hokka CO.
Bioprocesses using filamentous fungi immobilized in inert supports present many advantages when compared to conventional free cell processes . However, assessment of the real advantages of the unconventional process demands a rigorous study of the limitations to diffusional mass transfer of the reagents, especially concerning oxygen . In this work, a comparative study was carried out on the cephalosporin C production process in defined medium containing glucose and sucrose as main carbon and energy sources, by free and immobilized cells of Cephalosporium acremonium ATCC 48272 in calcium alginate gel beads containing alumina . The effective diffusivity of oxygen through the gel beads and the effectiveness factors related to the respiration rate of the microorganism were determined experimentally . By applying Monod kinetics, the respiration kinetics parameters were experimentally determined in independent experiments in a complete production medium . The effectiveness factor experimental values presented good agreement with the theoretical values of the approximated zero-order effectiveness factor, considering the dead core model . Furthermore, experimental results obtained with immobilized cells in a 1.7-L tower bioreactor were compared with those obtained in 5-L conventional fermentor with free cells . It could be concluded that it is possible to attain rather high production rates working with relatively large diameter gel beads (ca . 2.5 mm) and sucrose consumption-based productivity was remarkably higher with immobilized cells, i.e., 0.33 gCPC/kg sucrose/h against 0.24 gCPC/kg sucrose/h in the aerated stirred tank bioreactor process .

Biotechnol Bioeng, 1999 Aug 20, 64(4), 401 - 17
Incorporation of ammonium into intracellular UDP-activated N-acetylhexosamines and into carbohydrate structures in glycoproteins; Valley U et al.; The negative effects of ammonia on animal cells, especially in vitro cultures, are well known, but the mechanism of how ammonia inhibits cell growth and influences the glycosylation of proteins is not completely understood . We investigated the ammonium action on the synthesis of the intracellular UDP-N-acetylhexos- amines (UDPGNAc), which are precursors of glycosylation as well as on N-linked oligosaccharides of a recombinant human IL-2 mutant variant model glycoprotein expressed in BHK-21 cells under defined and controlled culture conditions in a continuously perfused bioreactor . The examinations were based on our previous observations that increased ammonia concentrations in the medium lead to the intracellular formation and accumulation of UDPGNAc (Ryll et al., 1994) . The kinetics of formation of the UDPGNAc pool after adding ammonia and its reconstitution to normal conditions are shown . To study the pathway leading to the intracellular increase of UDPGNAc, the uptake and incorporation of 15NH4+ was confirmed by the detection of 15N in UDP-N-acetylglucosamine (UDP-GlcNAc) . UDP-GlcNAc was purified using high pH anion-exchange chromatography with pulsed amperometric detection and analyzed by GC/MS . The proportion of UDP-GlcNAc containing 15N was approximately 60% and corresponds quantitatively to the increased intracellular concentration of UDP-GlcNAc . In order to confirm the direct influence of ammonia on protein glycosylation, the human IL-2 mutant glycoprotein variant IL-Mu6, bearing a novel N-glycosylation site, has been produced under defined protein-free medium conditions in the presence of 15NH4Cl . IL-Mu6 glycoprotein was purified and N-glycans released were analyzed by matrix-assisted laser desorption ionization time of flight mass spectroscopy . Maximally 60-80% of N-acetylated sugars in N-glycan structures contained 15N indicating that ammonium is used as a building block during synthesis of the carbohydrate structures expressed from in vitro cultivated mammalian cells .

Biotechnol Bioeng, 1999 Aug 5, 64(3), 357 - 67
Monitoring of intracellular ribonucleotide pools is a powerful tool in the development and characterization of mammalian cell culture processes; Grammatikos SI et al.; Efficient cell culture process development for the industrial production of recombinant therapeutics is characterized by constraints which pertain to issues such as costs, competitiveness and the meeting of project timelines . These constraints require tools which can help the developer learn as much as possible as quickly as possible about the cell at hand and identify features of a particular culture which are amenable to improvement . Current on- and off-line monitoring parameters, however useful, provide only late indications (cell concentration, viability) and circumstantial evidence (lactate, ammonia, etc.) with regard to the physiologic status of cells at the time of sampling . The relative intracellular content of purine to pyrimidine nucleotide triphosphates as well as the ratio of UTP to UDP-N-acetylhexosamines have been previously described as sensitive indicators of a cell's metabolic status, growth potential, and overall physiological condition . The sensitivity of such nucleotide ratios and their usefulness in commercially relevant process development and characterization were tested at Boehringer Ingelheim Pharma KG in a large number of fermentations (>80) with a variety of culture modes, cells, and products in scales up to 10,000 litres . Monitoring of these intracellular parameters allows a timely and reliable assessment of cell state and growth potential, which is possible neither by classical cell number and viability measurements nor by a variety of fermentation data typically monitored . The view inside the cell afforded by nucleotide monitoring enables prediction of the behavior of a culture up to 2 days before any hint of physiological changes is given by cell number and viability estimation . In this paper, data relating the growth behavior of CHO and hybridoma cell lines to their nucleotide pools are shown . Two very different processes for the production of recombinant tPA in 10,000-litre bioreactors are compared and characterized with respect to their nucleotide profiles . Examples from industrial process development cases in which intracellular nucleotide information is used to advantage are also presented and discussed .

Biotechnol Bioeng, 1999 Jul 20, 64(2), 194 - 9
Efficient coupled transcription/translation from PCR template by a hollow-fiber membrane bioreactor; Nakano H et al.; A novel bioreactor using a hollow-fiber membrane was developed for the coupled transcription/translation system using T7 RNA polymerase and Escherichia coli S30 extract . The large surface area per the reaction volume of the reactor assured rapid mass transfers of substrates into the reaction mixture and of wastes out from it across the membrane by their molecular diffusion . The flux was large enough to maintain nucleotide concentrations for more than 3 h, which increased the protein synthesis greatly . In addition, the T7 terminator sequence downstream from the reporter genes was found to increase the synthesized protein significantly, especially when the product of polymerase chain reaction (PCR) was used as a template . Implementation of this finding and use of the bioreactor developed multiplied the productivity of protein by the in vitro direct expression from PCR template .

Biotechnol Bioeng, 1999 Jun 5, 63(5), 618 - 24
Regional heparinization via simultaneous separation and reaction in a novel Taylor-Couette flow device; Ameer GA et al.; The development of a safe and efficient bioreactor design has remained a challenge for the clinical application of immobilized enzymes . Specifically, the use of immobilized heparinase I has been the target of many studies to make heparin anticoagulation therapy safer for the critically ill patient with kidney failure or heart disease . We have investigated the use of Taylor-Couette flow for a novel type of bioreactor . In a previous study, we showed that the fluidization of agarose immobilized heparinase within Taylor vortices in whole blood can lead to extensive blood damage in the form of cell depletion and hemolysis . Based on these findings, we designed and developed a reactor, referred to as vortex-flow plasmapheretic reactor (VFPR), that incorporated plasmapheresis and fluidization of the agarose in the reactive compartment, separate from the whole-blood path . In the present study, immobilized heparinase I was tested as a means of achieving regional heparinization of a closed circuit . This is a method in which heparin is infused into the extracorporeal circuit predialyzer and neutralized postdialyzer . Saline studies were performed with an immobilized heparinase I-packed bed and with the VFPR . An in vitro feasibility study was performed with the VFPR using human blood . The VFPR achieved heparin conversions of 44 +/- 0.5% and 34 +/- 2% in saline and blood, respectively . In addition, the VFPR caused no blood damage . We report a novel method to achieve fluidization which depended on secondary, circumferencial flow, and was independent of the primary flow through the device .

Compost is a common name for humus, which is the result of the decomposition of organic matter. Decomposition is performed primarily by microbes, although larger creatures such as worms and ants contribute to the process. Decomposition occurs naturally in all but the most hostile environments, such as buried in landfills or in extremely arid deserts, which prevent the microbes and other decomposers from thriving.

Composting is the controlled decomposition of organic matter. Rather than allowing nature to take its slow course, a composter provides an optimal environment in which decomposers can thrive. To encourage the most active microbes, the compost pile needs the proper mix of the following ingredients: Carbon Nitrogen Oxygen (air) Water. Decomposition happens even in the absence of some of these ingredients, but not nearly as quickly and not nearly as pleasantly (for example, the plastic bag of vegetables in your refrigerator is decomposed by microbes, but the absence of air encourages anaerobic microbes that produce disagreeable odors).

All guidelines for building compost piles have the goal of creating the proper environment for a decomposing ecosystem. The ecosystem in a compost pile is a microcosm of larger ecosystems. The correct environment must be maintained for a healthy and vigorous community of decomposers. In addition to the decomposers that work directly on the organic content of the pile, compost piles provide habitat for those that prey upon direct decomposers. Their waste also becomes part of the process.

The most effective decomposers are bacteria and other microorganisms. Also important are fungi, molds, protozoa, and actinomycetes--which is something between a fungus and a mold and is often seen as white filaments in decomposing organic matter. At a macroscopic level, earthworms, ants, snails, slugs, millipedes, sow bugs, springtails, and others work on consuming and breaking down the organic matter. Centipedes and other predators feed upon these decomposers.

Compost ingredients The goal in a compost pile is to provide a healthy environment--and nutrition--for the rapid decomposers, the bacteria.

The most rapid composting occurs with the ideal ratio--by dry chemical weight--of carbon to nitrogen, from 25-to-1 to 30-to-1. In other words, the ingredients placed in the pile should contain 30 times as much carbon as nitrogen. For example, grass clippings average about 19-to-1 and dry autumn leaves average about 55-to-1. Mixing equal parts by volume approximates the ideal range. Commercial-grade composting operations pay strict attention to this ratio. For backyard composters, however, the charts of carbon and nitrogen ratios in various ingredients and the calculations required to get the ideal mixture can be intimidating, so many rules of thumb exist to guide composters in approximating this mixture.

High-carbon sources provide the cellulose needed by the composting bacteria for conversion to sugars and heat.

High-nitrogen sources provide the most concentrated protein, which allow the compost bacteria to thrive.

Some ingredients with higher carbon content:

Dry, straw-type material, such as cereal straws Autumn leaves Sawdust and wood chips Some paper and cardboard (such as corrugated cardboard or newsprint with soy-based inks) Some ingredients with higher nitrogen content:

Wilted green material (usually crop residues, or plants mowed for the purpose) Animal manures (vegetarians, not meat-eaters) Grass clippings Fruit and vegetable trimmings, skins, and waste Poultry manure provides lots of nitrogen but little carbon. Horse manure provides both. Sheep and cattle manure don't drive the compost heap to as high a temperature as poultry or horse manure, so the heap takes longer to produce the finished product.

In an attempt to judge the proper mix of materials, different rules of thumb are available. Some prefer to add one basket full of nitrogen source followed by one basket of carbon source. Mixing the materials as they are added increases the rate of decomposition, but some people prefer to place the materials in alternating layers, approximately 15 cm (6 inches) thick, to help estimate the quantities. Keeping carbon and nitrogen sources separated in the pile can slow down the process but decomposition will occur in any event.

Composting techniques There are two primary methods of aerobic composting:

Active (or hot) composting, which allows the most effective decomposing bacteria to thrive, kills most pathogens and seeds, and rapidly produces usable compost Passive (or cold) composting, which lets nature take its course in a more leisurely manner and leaves many pathogens and seeds dormant in the pile Most commercial and industrial composting operations use active composting techniques. This ensures a higher quality product and produces results in the shortest time (SEE compost windrow turner).

Home composters use a range of techniques varying from extremely passive composting (throw everything in a pile in a corner and leave it alone for a year or two) to extremely active (monitoring the temperature, turning the pile regularly, and adjusting the ingredients over time) and combinations of both.

Some composters use mineral powders to absorb smells, although a well-maintained pile seldom has bad odors.

Microbes and heating the pile An effective compost pile is kept about as damp as a well wrung-out sponge. This provides the moisture that all life needs to survive; in a compost pile, it provides an environment in which microbes can begin to do their work. Bacteria and other microorganisms fall into a variety of groups in terms of what their ideal temperature is and how much heat they generate as they do their work. Mesophilic bacteria enjoy midrange temperatures, from about 20 to 40 °C (70 to 110 °F). As they decompose the organic matter, they generate heat, and the inner part of a compost pile heats up the most.

The heap should be about 1 m (3 ft) wide, 1 m (3 ft) tall, and as long as is practicable – the advantage to making the heap at least 1 m³ (1 yd³) is that it provides suitable insulating mass to allow a good heat build-up as the material decays. The ideal temperature range hovers around 60 °C (140 °F), which kills most pathogens and weed seeds and also provides a suitable environment for thermophilic (heat-loving) bacteria, which are the fastest acting decomposers. The centre of the heap should get quite warm, possibly hot enough to burn a bare hand. If this fails to happen, common reasons include the following:

The heap is too wet, thus excluding the oxygen required by the compost bacteria The heap is too dry, so that the bacteria do not have the moisture needed to survive and reproduce There is insufficient protein (nitrogen rich material) The solution is to add material, if necessary, and/or to turn the pile to aerate it.

Depending on how quickly the compost is required, the heap can be turned one or more times to bring the outer layers to the inside of the heap and vice versa, as well as to aerate the mixture. Adding water at this time keeps the pile as damp as a wrung-out sponge. One guideline is to turn the pile when the high temperature has begun to drop, indicating that the food source for the fastest-acting bacteria (in the center of the pile) has been largely consumed. After the temperature stops rising after the pile has been turned, there is no further advantage in turning the pile. When all the material has become barely recognisable from the original ingredients, turning into dark brown or nearly black crumbly matter, it's ready to use. Some practitioners like to leave the compost to mature further for up to a year as this seems to make the benefits of compost last longer.

Other ingredients Some like to put special materials and activators into their compost. A light dusting of agricultural lime (not on the animal manure layers) can curb excessive acidity that can slow down the fermentation. Seaweed meal can provide a ready source of trace elements. Finely pulverised rock dust can also provide needed minerals, but watch out for rock dust that consists mostly of clay.

The animal manure part of compost source materials can be collected by composting toilets (in this case, human feces). However, such compost is usually not used as a fertilizer for plants that are directly edible (e.g., salad crops) but should instead be used on trees, bush fruits or else on the ornamental garden.

Bioaugmentation refers to the introduction of a group of natural microbial strain or a genetically engineered variant so as to achive bioremediation.

Usually the step involves studying the indigenous varieties present in the location. If the indigenous variety do not have the metabolic machinery that can do the remediation process, exogenous varieties with such sophisticated pathways are introduced.

Remediation is the removal of pollution or contaminants from land (including sediments in waterways) for the general protection of the environment or, quite commonly, from a brownfield site so that it can be reused. The reuse of brownfield sites is part of the urban consolidation movement and allows the regeneration of decaying former industrial areas, sometimes for industry, but often for high density housing, particulalry in areas of scenic beauty (along Harbours and rivers) and close to the CBD of a city or major transport infrastructure such as railway stations.

Remediation is generally subject to an array of legislation, and is based on assessments of health and ecological risks where there are no legislated standards or where standards are advisory (often called preliminary remediation goals (PRG)s).

Remediation in terms of new media, is the representation of one medium in another. (Jay David Bolter and Richard Grusin 1999).

Remediation standards In the USA the most comprehensive set of PRG's is from the EPA Region 9, although the Canadian EPA also has a comprehensive spreadsheet of PRG's. There is also a set of standard used in Europe commonly called the Dutch standards. The EU is rapidly moving towards European wide standards, although most of the industrialised nations in Europe have their own standards at present

Site assessment Once a site is suspected of being seriously contaminated there is a need to assess it. The historical use of the site and the materials used and produced on site will guide the assessment strategy and nature of sampling and chemical testing to be done. Often nearby sites owned by the same company or which are nearby and have been reclaimed, levelled or filled are also contaminated even where the current land use seems innocuous. For example, the car park may have been levelled by using contaminated waste in the fill. It is also important to consider off site contamination or nearby sites often through decades of emissions to soil, water, and air. Ceiling dust, topsoil, surface and groundwater of nearby properties should be tested both before and after the remediation. This is a controversial step as:

No one wants to have to pay for the clean up of the site; If nearby properties are found to be contaminated it may have to be noted on their property title, potentially affecting saleability or value; No one wants to pay for the cost of assessment. Often corporations which do voluntary testing of their sites are protected from the reports to environmental agencies becoming public under Freedom of Information Acts, however a Freedom Of Information inquiry will often produce other documents that are not protected or will produce references to the reports.

Funding remediation In the US there has been a mechanism for taxing polluting industries to form a Superfund to remediate abandoned sites, or to litigate to force corporations to remediate their contaminated sites. Other countries have other mechanisms and commonly sites are rezoned to "higher" uses such as high density housing, to give the land a higher value so that after deducting clean up costs there is still an incentive for a developer to purchase the land, clean it up, redevelop it and sell it on, often as apartments (home units).

Remediation technologies Remediation technologies are many and varied. The best source of information is probably http://www.clu-in.org/

Some technologies are controversial, particularly anything involving relative low temperature incineration because of the risks of dioxins released in the atmosphere through the exhaust gases. For this reason remediation proponents often use terminolgy like thermal oxidiser and direct thermal desorption to minimise the risk of the community thinking about incineration risks. However, controlled, high temperature incineration with filtering of exhaust gases should not pose any risks.

The treatment of environmental problems through biological means is known as bioremediation and the specific use of plants is known as phytoremediation.

Community consultation and information In preparation for any significant remediation there should be extensive community consultation. The proponent should both present information to and seek information from the community. The proponent needs to know about "sensitive" (future) uses like childcare, schools, hospitals, and playgrounds as well as community concerns and interests information. Consultation should be open, on a group basis so that each member of the community is informed about issues they may not have individually thought about. An independent chairperson acceptable to both the proponent and the community should be engaged (at proponent expense if a fee is required). Minutes of meetings including questions asked and the answers to them and copies of presentations by the proponent should be available both on the internet and at a local library (even a school library) or community centre.

Incremental health risk Incremental Health Risk is the increased risk that a receptor (normally a human being living nearby) will face from (the lack of) a remediation project. The use of incremental health risk is based on cancer and non-cancer effects such as reproductive abnormalities and often involves value judgements about the acceptable projected rate of increase in cancer. In some jursdictions this is 1 in a million, but in other jurisdictions it is 1 in 100,000. A relatively small incremental health risk from a single project is not of much comfort if the area already has a relatively high health risk from other operations like incinerators or other emissions, or if there are other projects at the same time causing a greater cumulative risk or an unacceptably high total risk. An analogy often used by remediators is to compare the risk of the remediation on nearby residents to the risks of death through car accidents or tobacco smoking.

Emissions standards Standards are set for the levels of dust, noise, odour, emissions to air and groundwater, and discharge to sewer or waterways of all chemicals of concern or chemicals likely to be produced during the remediation by processing of the contaminants. These are compared against both natural background levels in the area and standards for areas zoned as nearby areas are zoned and against standards used in other recent remediations. Just because the emission is emanating from an area zoned industrial doesn't mean that in a nearby residential area there should be permitted any exceedences of the appropriate residential standards.

Monitoring for compliance against each standards is critical to ensure that exceedences are detected and reported both to authorities and the local community.

Enforcement is necessary to ensure that continued or significant breeches result in fines or even a jail sentence for the remediator.

Penalties must be significant as otherwise fines are treated as a normal expense of doing business. It must be cheaper to comply than have continuous breeeches.

Transport and emergency safety assessment Assessment should be made of the risks of operations, transporting contaminated material, disposal of waste which may be contaminated including workers clothes, and a formal emergency response plan should be developed. Every worker and visitor entering the site should have a safety induction tailored to their involvement with the site.

Impacts of funding remediation The rezoning is often resisted by local communities and local government because of the adverse impacts on the local amenity of the remediation and the new development. The main impacts during remediation are noise, dust, odour and incremental health risk. Then there is the noise dust and traffic of developments. Then there is the impact on local traffic, schools, playing fields, and other public facilities of the often vastly increased local population.

Example of a major remediation project For an example of a complete rezoning by a state government over the opposition of local government and local communities of former chemical plants to fund remediation to allow for redevelopment for high density residential, retail and office development in Australia see http://rhodesnsw.org

In this case the proposed rezoning, remediation and redevelopment has a wealth of material available through the internet from:

list of sources of publicly available material, most accessible through the internet and from http://rhodesnsw.org: Numerous investigations and reports by Australian and International consultants For the former Union Carbide site, a previous remediation by excavation and containment in a clay capped sarcophagus, separated from the Bay by a bentonite wall. A Parliamentary Inquiry by the Upper House of the Parliament of New South Wales, a state of Australia; Two Commissions of Inquiry, one for each of the major dioxin contaminated sites, both contaminated by the operations of Union Carbide; Resolutions by the relevant local government bodies (originally Concord council and after the Municipality of Concord was merged with Drummoyne Council to form the City of Canada Bay, by that Council); Campaigns by local residents' groups, Greenpeace Australia, Nature Conservation Council of NSW, and Inner West (of Sydney branch of the) Greens published submissions by Planning NSW and Environmental Protection Agency of NSW; Comprehensive Environmental Impact studies published in digital format and available on CD from Planning NSW. This rezoning, remediation and redevelopment of land contaminated by Union Carbide, ICI and others also involves the remediation of a strip of dioxin contaminated sediments in Homebush Bay, New South Wales. The Homebush Bay area was home to the main events of the Sydney 2000 Summer Olympics. The sediments were dealt with in the Commission of Inquiry into the Lednez site formerly owned by Union Carbide, but not to the satisfaction of local community activists.

The remediation of Homebush Bay is important because of its impact on the food chain which extends through benthos not only to local protected and threatened species of birds, but also to JAMBA and CAMBA protected species and species which use other RAMSAR protected wetlands. Ultimately human health is impacted through the food chain. Homebush Bay has a complete fishing ban, there is a commercial fin fishing ban west of the Gladesville Bridge, and based on submissions of the remediator and NSW Waterways and EPA the complete fishing ban ought be extended to the whole of the Parramatta River west of Homebush Bay and at least as far East as the Ryde Traffic Bridge.

Phytoremediation is the technical term used to describe the treatment of environmental problems through the use of plants.

Certain plants are able to extract hazardous substances such as arsenic, lead and uranium from soil and water. One example is alpine pennycress, a plant which naturally accumulates high levels of cadmium and zinc from the environment. Alpine pennycress is therefore known as a hyperaccumulator of these metals, which in unnaturally high levels would be poisionous to many plants. Another example of a hyperaccumulator is the brake fern. This fern extracts arsenic from the soil at a much greater rate than other plants.

This has been done successfully in clinical trials, particularly in the case of Ashanti DeSilva, a girl who had a defective gene that was responsible for the immune system enzyme ADA. Thus she was prone to infections. Scientists took out her white blood cells and used a delivery system to inject a functional ADA gene into the cells. These were injected back into Ashanti's arm. a, f. Now she takes only a small "backup" dose of what would have been a battery of preventive medicines for maintaining her healthy state.

This arsenic is stored in the fern's leaves at as much as 200 times that present in the soil, thus enabling effective and practical clean-up programs. Sunflowers were also used to clean up uranium near Chernobyl.

Breeding programs and genetic engineering are powerful methods for enhancing natural tendencies of plant, or for introducing these tendencies into alternative types of plant which might be more suitable for the environmental conditions.

The range of biological treatments for environmental problems, as described by the term phytoremediation, actually consists of several specific processes:

Phytoextraction - Uptake of substances from the environment, with storage in the plant (phytoaccumulation). Phytostabilisation - Reducing the movement or transfer of substances in the environment. For example, limiting the leaching of substances contaminating soil. Phytostimulation - Enhancement of microbial activity for the degradation of contaminants, typically around plant roots. Phytotransformation - Uptake of substances from the environment, with degradation occurring within the plant (phytodegradation). Phytovolatilization - Removal of substances from the soil or water with release into the air, possibly after degradation. Rhizofiltration - The removal of toxic metals from ground water.

Bioleaching is the extraction of specific metals from their ores through the use of bacteria.

Bioleaching is a new technique used by the mining industry to extract minerals such as gold and copper from their ores. Traditional extractions involve many expensive steps such as roasting and smelting, which requires sufficient concentrations of elements in ores. Low concentrations are not a problem for bacteria because they simply ignore the waste which surrounds the metals, attaining extraction yields of over 90% in some cases. These microorganisms actually gain energy by breaking down minerals into their constituent elements. The company simply collects the ions out of solution after the bacteria have finished.

Some advantages associated with bioleaching are:

economical: bioleaching is generally simpler and therefore cheaper to operate and maintain than traditional processes, since fewer specialists are needed to operate complex chemical plants. environmental: The process is more environmentally friendly than traditional extraction methods. For the company this can translate into profit, since the necessary limiting of sulfur dioxide emissions during smelting is expensive. Less landscape damage occurs, since the bacteria involved grow naturally, and the mine and surrounding area can be left relatively untouched. As the bacteria breed in the conditions of the mine, they are easily cultivated and recycled. Some disadvantages associated with bioleaching are:

not economical: the bacterial leaching process is very slow compared to smelting. This brings in less profit as well as introducing a significant delay in cash flow for new plants. not environmental: Toxic chemicals are sometimes produced in the process. Sulfuric acid and H+ ions formed can leak into the ground and surface water turning it acidic, causing environmental damage. Heavy ions such as iron, zinc, and arsenic leak during acid mine drainage. When the pH of this solution rises, as a result of dilution by fresh water, these ions precipitate, forming "Yellow Boy" pollution. For these reasons, setup of bioleaching must be carefully planned, since the process can lead to biosafety failure. f, i, a. Currently it is more economical to smelt copper ore rather than to use bioleaching, since the concentration of copper in its ore is generally quite high. The profit obtained from the speed and yield of smelting justifies its cost. However, the concentration of gold in its ore is generally very low. The cheaper cost of bacterial leaching in this case outweighs the time it takes to extract the metal.

Bacteria (singular, bacterium) are a major group of living organisms. They are microscopic and mostly unicellular, with a relatively simple cell structure lacking a cell nucleus, cytoskeleton, and organelles such as mitochondria and chloroplasts. Such organisms are called prokaryotes, in contrast to organisms with more complex cells, called eukaryotes. The term bacteria has variously applied to all prokaryotes or to a major group of them, depending on ideas about their relationships.

abundant of all organisms. They are ubiquitous in soil, water, and as symbionts of other organisms. Many pathogens, including those responsible for many if not most non-hereditary diseases, are bacteria. Most are minute, usually only 0.5-5.0 μm in size, though one type may reach 0.3 mm in diameter (Thiomargarita). They generally have cell walls, like plant and fungal cells, but with a very different composition (peptidoglycans). Many move around using flagella, which are different in structure from the flagella of other groups.

The first bacteria were observed by Antony van Leeuwenhoek in 1683 using a single-lens microscope of his own design. The name bacterium was introduced much later, by Ehrenberg in 1828, derived from the Greek word βακτηριον meaning "small stick". Louis Pasteur (1822-1895) and Robert Koch (1843-1910) described the role of bacteria as conveyors and causes of disease or pathogens.

Originally the bacteria were considered microscopic fungi (called Schizomycetes), except for the photosynthetic cyanobacteria, which were considered a group of algae (called Cyanophyta or blue-green algae). It was only with the study of detailed cell structure that it was realized they formed a fundamental group, separate from the other organisms. In 1956 Copeland gave them their own kingdom Mychota, later renamed Monera, Prokaryota, or Bacteria. During the 1960s the concept was refined and bacteria (now including cyanobacteria) were recognized as one of two major divisions of the living world, together with the eukaryotes. Eukaryotes were generally believed to have evolved from bacteria, later from assemblies of bacteria.

The advent of molecular systematics challenged this view. In 1977, Woese divided the prokaryotes into two groups based on 16S rRNA sequences, called the kingdoms Eubacteria and Archaebacteria. He argued that each of these and the eukaryotes all evolved separately and in 1990 emphasized this by promoting them to domains, which were renamed the Bacteria, Archaea, and Eucarya. This redefinition has generally been accepted by molecular biologists but criticized by some others, who maintain that he over-emphasized a few genetic differences and that both archaebacteria and eukaryotes probably developed from within the eubacteria.

Reproduction Bacteria reproduce only asexually, not sexually. Specifically they reproduce by binary fission, or simple cell division. During this process, one cell divides into two daughter cells with the development of a transverse cell wall.

However, independent of sexual reproduction, genetic variations can occur within individual cells through recombinant events such as mutation (random genetic change within a cell's own genetic code). Similar to more complex organisms, bacteria also have mechanisms for exchanging genetic material. Although not equivalent to sexual reproduction, the end result is that a bacterium contains a combination of traits from two different parental cells. Three different modes of exchange have thus far been identified in bacteria:

transformation (the transfer of naked DNA from one bacterial cell to another in solution, this can include dead bacteria), transduction (the transfer of viral, bacterial, or both bacterial and viral DNA from one cell to another via bacteriophage) and; bacterial conjugation (the transfer of DNA from one bacterial cell to another via a special protein structure called a conjugation pilus). Bacteria, having acquired DNA from any of these events, can then undergo fission and pass the recombined genome to new progeny cells. Many bacteria harbor plasmids that contain extrachromosomal DNA. Under favourable conditions, bacteria may form aggregates visible to the naked eye, such as bacterial mats.

Researchers today are using the same method to find cures for cancers, AIDS, and cystic fibrosis. DNA Vaccines and Edible Vaccines are two types of vaccines biotechnologists are trying to develop. Both aim to produce vaccines that are cheaper and more accessible. DNA vaccines are composed of genes that code for inactive virus parts. When injected directly into our bodies, we will produce these inactive virus parts that may cause our immune system to recognize the whole virus when it infects us later. h, a, k, d, k. Thus our immune system will be ready to defend us. On the other hand, in edible vaccines these genes are packaged into food, such as bananas, so that they will be in a form readily distributed and accepted by the people. No more injections!

Metabolisms Bacteria show a wide variety of different metabolisms. Heterotrophs depend on an organic source of carbon, while autotrophs are able to synthesize organic compounds from carbon dioxide and water. Autotrophs that obtain energy by oxidizing chemical compounds are called chemotrophs, and those that obtain their energy from light, via photosynthesis, are called phototrophs. There are many variations on this terminology such as chemoautotrophs and photosynthetic autotrophs and so on. In addition, bacteria are distinguished based on the source of reducing equivalents they are using. Those using inorganic compounds (e. g. water, hydrogen, sulfide or ammonia) for this purpose are called lithotrophs and others needing organic compounds (e. g. sugars or organic acids) and are called organotrophs. The metabolic modes of energy metabolism (phototrophy or chemotrophy), reducing equivalent sources (lithotrophy or organotrophy) and carbon sources (autotrophy or heterotrophy) can be combined differently in any single microorganism, and even shifting between different modes frequently occurs in many species.

The photolithoautotrophs include the cyanobacteria, which are some of the oldest organisms known from the fossil record and probably played an important role in creating the Earth's oxygen atmosphere. They apparently pioneered the use of water as (lithotrophic) electron source and were the first to use the photosynthetic water splitting apparatus. Other photosynthetic bacteria use different electron sources and therefore do not produce oxygen. These anoxygenic phototrophs fall into four phylogenetic groups: the green sulfur bacteria, green non-sulfur bacteria, purple bacteria, and heliobacteria.

Other nutritional requirements include nitrogen, sulfur, phosphorus, vitamins and metallic elements such as sodium, potassium, calcium, magnesium, manganese, iron, zinc, cobalt, copper and nickel for normal growth. For some species, additional trace elements such as selenium, tungsten, vanadium or boron are needed.

Based on their response to oxygen, most bacteria can be placed into one of three groups: Some bacteria can grow only in the presence of oxygen and are called aerobes; others can grow only in the absence of oxygen and are called anaerobes; and some can grow in the presence or absence of oxygen and are called facultative anaerobes. Bacteria that do not utilize oxygen for respiration but still grow in its presence are called aerotolerant. Bacteria also thrive in environments that are considered extreme for mankind. These organisms are called extremophiles. Some bacteria inhabit hot springs and are called thermophiles; others inhabit highly saltine lakes and are called halophiles; yet others inhabit acidic or alkaline environments and are called acidophiles and alkaliphiles, respectively; and still others inhabit alpine glaciers and are called psychrophiles.

Movement Motile bacteria can move about, either using flagella, bacterial gliding, or changes of buoyancy. A unique group of bacteria, the spirochaetes, have structures similar to flagella, called axial filaments, between two membranes in the periplasmic space. They have a distinctive helical body which twists about as it moves.

Bacterial flagella are arranged in many different ways. Bacteria can have a single polar flagellum at one end of a cell, or they can have clusters of many flagella at one end. Peritrichous bacteria have flagella scattered all over the cell. Many bacteria (such as e.coli) have two distinct modes of movement: forward movement (swimming) and tumbling. The tumbling allows them to reorient and introduces an important element of randomness in their forward movement. (see external links below for link to videos).

Motile bacteria are attracted or repelled by certain stimuli, behaviors called taxes - for instance, chemotaxis, phototaxis, mechanotaxis and magnetotaxis (Italian) (http://it.wikipedia.org/wiki/Batteri_magnetotattici). In one peculiar group, the myxobacteria, individual bacteria attract to form swarms and may differentiate to form fruiting bodies.

Bacteria come in a variety of different shapes. Most are rod-shaped, sphere-shaped, or helix-shaped; these are respectively referred to as bacilli, cocci, and spirillum. An additional group, vibrios, are comma-shaped. Shape is no longer considered a defining factor in the classification of bacteria, but many genera are named for their shape (e.g. Bacillus, Streptococcus, Staphylococcus) and it is an important part in their identification.

Another important tool is Gram staining, named after Hans Christian Gram who developed the technique. This separates bacteria into two groups, based on the composition of their cell wall. The first formal grouping of bacteria into phyla was based largely on this test:

Gracilicutes - bacteria with a second cell membrane containing lipids, giving them Gram-negative stains Firmicutes - bacteria with a single membrane and thick peptidoglycan wall, giving them Gram-positive stains Mollicutes - bacteria with no second membrane or wall, giving them Gram-negative stains The archeabacteria were originally included as the Mendosicutes. As given, these phyla are no longer believed to represent monophyletic groups. The Gracilicutes have been divided into many different phyla. Most gram-positive bacteria are placed in the phyla Firmicutes and Actinobacteria, which are closely related. However, the Firmicutes have been redefined to include the mycoplasmas (Mollicutes) and certain Gram-negative bacteria.

Benefits and dangers Bacteria are both harmful and useful to the environment, and animals, including humans. The role of bacteria in disease and infection is important. Some bacteria act as pathogens and cause tetanus, typhoid fever, pneumonia, syphilis, cholera, foodborne illness and tuberculosis. Sepsis, a systemic infectious syndrome characterized by shock and massive vasodilation, or localized infection, can be caused by bacteria such as streptococcus, staphylococcus, or many gram-negative bacteria. Some bacterial infections can spread throughout the host's body and become systemic. In plants, bacteria cause leaf spot, fireblight, and wilts. The mode of infection includes contact, air, food, water, and insect-borne microorganisms. The hosts infected with the pathogens may be treated with antibiotics, which can be classified as bacteriocidal and bacteriostatic, which at concentrations that can be reached in bodily fluids either kill bacteria or hamper their growth, respectively. Antiseptic measures may be taken to prevent infection by bacteria, for example, prior to cutting the skin during surgery or swabbing skin with alcohol when piercing the skin with the needle of a syringe. Sterilization of surgical and dental instruments is done to make them sterile or pathogen-free to prevent contamination and infection by bacteria. Sanitizers and disinfectants are used to kill bacteria or other pathogens to prevent contamination and risk of infection.

In soil, microorganisms help in the transformation of nitrogen to ammonia with enzymes secreted by these microbes, which reside in the rhizosphere (a zone that includes the root surface and the soil that adheres to the root after gentle shaking). Some bacteria are able to use molecular nitrogen as their source of nitrogen, converting it to nitrogenous compounds, a process known as nitrogen fixation. Many other bacteria are found as symbionts in humans and other organisms. For example, their presence in the large intestine can help prevent the growth of potentially harmful microbes.

The ability of bacteria to degrade a variety of organic compounds is remarkable. Highly specialized groups of microorganisms play important roles in the mineralization of specific classes of organic compounds. For example, the decomposition of cellulose, which is one of the most abundant constituents of plant tissues, is mainly brought about by aerobic bacteria that belong to the genus Cytophaga.

Bacteria, often in combination with yeasts and molds, are used in the preparation of fermented foods such as cheese, pickles, soy sauce, sauerkraut, vinegar, wine, and yoghurt. Using biotechnology techniques, bacteria can be bioengineered for the production of therapeutic drugs, such as insulin, or for the bioremediation of toxic wastes.

Miscellaneous In terms of evolution, bacteria are thought to be very old organisms, appearing about 3.7 billion years ago.

Two organelles, mitochondria and chloroplasts, are generally believed to have been derived from endosymbiotic bacteria.

Microorganisms are widely distributed and are most abundant where they have food, moisture, and the right temperature for their multiplication and growth. Bacteria can be carried by air currents from one place to another. The human body is home to billions of microorganisms; they can be found on skin surfaces, in the intestinal tract, in the mouth, nose, and other body openings. They are in the air one breathes, the water one drinks, and the food one eats.

A micro-organism or microbe is an organism that is so small that it is invisible to the naked eye. The term is synonymous by usage to single-celled organism, and unicellular organism, even though some consist of more than one cell, some unicellular protists are visible to the naked eye, and some colonial species are microscopic. All unicellular organisms are able to reproduce themselves without help of other organisms, as opposed to viruses.

Micro-organisms may be found almost anywhere in the taxonomic structure. Bacteria and archaea are always or almost always microscopic, as are most protists. Even some fungi, a primarily macroscopic taxon, are micro-organisms.

Micro-organisms are found everywhere in nature, owing to the existence of extremophiles, micro-organisms that have adapted to generally hostile environments. Extremophiles may be found in environments such as the poles, deserts, geysers, just beneath the surface of rocks, and the bottom of the deep sea. Some are known to survive prolonged time in vacuum, or to be unusually resistant to radiation.

Micro-organisms can be helpful in recycling other organisms' remains and waste products, or when employed in biotechnology, e.g., for brewing and bakery. They can also be harmful as pathogens when, as parasites, causing infections. Micro-organisms were probably the first form of life that appeared on earth. Today they have an important place in all ecosystems and in most higher multicellular organisms. For mankind they are important for participating in driving the earths main element cycles, and for the creation of certain types of food, medical substances and biological weapons.

In the future, non-allergenic chocolates and other foodstuffs can be produced. Food can be genetically engineered to remove its protein component that causes allergies. This would relieve a great number of people who are now on restricted diets because of food allergy. Biotechnology offers us a wide range of products that will make our lives easier: by protecting us from disease, by finding new ways of treatment, by helping increase the production of food in quality and quantity, and by maintaining the environment. This is the thrust of The National Institutes of Molecular Biology and Biotechnology. Any new technology must not only be beneficial to the people, but must also follow the rules of sustainable development. l, a, f, b, d. As recipients of this technology, we must be open to all possibilities and support the work of Philippine researchers, because biotechnology is truly a "human technology".

Biotechnology in one form or another has flourished since prehistoric times. When the first human beings realized that they could plant their own crops and breed their own animals, they learned to use biotechnology. The discovery that fruit juices fermented into wine, or that milk could be converted into cheese or yogurt, or that beer could be made by fermenting solutions of malt and hops began the study of biotechnology. When the first bakers found that they could make a soft, spongy bread rather than a firm, thin cracker, they were acting as fledgling biotechnologists. The first animal breeders, realizing that different physical traits could be either magnified or lost by mating appropriate pairs of animals, engaged in the manipulations of biotechnology.

What then is biotechnology? The term brings to mind many different things. Some think of developing new types of animals. Others dream of almost unlimited sources of human therapeutic drugs. Still others envision the possibility of growing crops that are more nutritious and naturally pest-resistant to feed a rapidly growing world population. This question elicits almost as many first-thought responses as there are people to whom the question can be posed.

In its purest form, the term "biotechnology" refers to the use of living organisms or their products to modify human health and the human environment. Prehistoric biotechnologists did this as they used yeast cells to raise bread dough and to ferment alcoholic beverages, and bacterial cells to make cheeses and yogurts and as they bred their strong, productive animals to make even stronger and more productive offspring.

Biotechnology is a broad term that applies to all practical uses of living organisms—anything from microorganisms used in the fermentation of beer to the most sophisticated application of gene therapy. The term covers applications that are old and new, familiar and strange, sophisticated and simple. Defined in this way, the term is almost too broad to be useful. One way of thinking about biotechnology is to consider two categories of activities: those that are traditional and familiar and those that are relatively new. Within each category can be found technologies that are genetic—that involve modifications of traits passed down from one generation to the next—and technologies that are not.

Although there are interesting issues connected with a number of biotechnologies—both old and new—most of UCS's work focuses on genetic engineering, a new genetic biotechnology.

Traditional Biotechnologies

A prime example of traditional genetic biotechnologies is selective breeding of plants and animals. The rudiments of selecting plants and animals with desirable traits and breeding them under controlled conditions probably go back to the dawn of civilization, but the expansion of knowledge about genetics and biology in this century has developed selective breeding into a powerful and sophisticated technology. New molecular approaches like marker-assisted breeding (which enhances traditional breeding through knowledge of which cultivars or breeds carry which trait) promise to enhance these approaches even further. Traditional breeding technologies have been immensely successful, and indeed are largely responsible for the high yields associated with contemporary agriculture. These technologies should not be considered passé or out of date. For multigene traits like intrinsic yield and drought resistance, they surpass genetic engineering. This is because selective breeding operates on whole organisms—complete sets of coordinated genes—while genetic engineering is restricted to three or four gene transfers with little control over where the new genes are inserted. For the most important agronomic traits, traditional breeding remains the technology of choice.

Other traditional nongenetic biotechnologies include the fermentation of microorganisms to produce wine, beer, and cheese. Industry also uses microorganisms to produce various products such as enzymes for use in laundry detergents. In an effort to find microorganisms that produce large amounts of enzymes, scientists sometimes treat a batch of organisms with radiation or chemicals to randomly produce genetic alternations. The process, called mutagenesis, produces numerous genetic changes in the bacteria, among which might be a few that produce more of the desired product.

New Biotechnologies

Many new biotechnologies do not involve modifications of traits passed on to the next generation. A good example is monoclonal antibodies (highly specific preparations of antibodies that bind to a single site on a protein), which have many diagnostic applications, including home pregnancy testing kits. Many biotechnology companies are engaged in these sophisticated, but noncontroversial, technologies. By contrast, mammalian cloning is a new biotechnology that does not involve gene modification, but is nevertheless highly controversial. Cloning reproduces adult mammals by transplanting a nucleus from adult cells into an egg from which the nucleus has been removed and allowing the egg to develop in a surrogate manner. The resulting individuals are as similar to the adults from which the nuclei were taken as identical twins are to one another. Although this procedure has profound implications for human reproduction, it does not modify specific traits of an individual, but rather transfers a whole nucleus containing a complete set of genetic information.

The new technology that can affect future generations is genetic engineering, a technology based on the artificial manipulation and transfer of genetic material. This technology can move genes and the traits they dictate across natural boundaries—from one type of plant to another, from one type of animal to another, and even from a plant to an animal or an animal to a plant. Cells modified by these techniques pass the new genes and traits on to their offspring. Genetic engineering can apply to any kind of living organism from microorganisms to humans.

Genetic engineering can be applied to humans to replace or supplement defective genes. Where engineering is intended to cure disease, it is called gene therapy. Potential applications that are not related to disease, such as the modification of traits like height, are sometimes called genetic enhancement. Currently, most genetic engineering of humans is done on nonreproductive or somatic cells, like those from bone marrow. The effects of this somatic cell gene therapy are confined to the treated individual. By contrast, germ line gene therapy would modify reproductive cells, so that the modification could be passed on to future generations.

Biotechnology; what is it? Biotechnology is the use of organisms to perform useful chemical reactions for industrial purposes. Brewing, in which yeast makes alcohol and carbon dioxide from sugar, is probably the easiest example which springs to mind. Modern biotechnology frequently involves genetic engineering of those organisms to improve an industrial process. The study of biotechnology at University involves study of microbiology, biochemistry and genetics. e, h, d, h, d. Knowledge of all three subjects is crucial in an area where microorganisms are frequently being genetically engineered to perform novel or enhanced biochemical reactions.

'Biotechnology' is a term used to cover the use of living things in industry, technology, medicine or agriculture. Biotechnology is used in the production of foods and medicines, the removal of wastes and the creation of renewable energy sources.

Simply defined, biotechnology is any technology that relies on living organisms or biological systems. By this definition, human beings have been using biotechnology for thousands of years to produce food products, textiles and other necessary items. Several familiar items -- including yeast-rising bread, yogurt, cheese, wine, beer and vinegar -- are all produced with the help of cultured microorganisms.

In recent years, however, the term "biotechnology" has come to mean the use of genetic engineering and its associated techniques. This more common definition is found in a variety of applications, from medicine to agriculture.

Amgen manufactures therapeutics based on molecules that already exist in the human body. Biotechnology is the process by which these natural components of the body are produced in sufficient quantities to use therapeutically.

Pharmaceuticals produced in this way are virtually identical to naturally occurring materials. These products are usually proteins, and have a very specific physiological role. As a result, they may have fewer undesirable side effects associated with them. By contrast, traditional drugs are produced through synthetic organic chemistry, and are often less specific in their activity. Numerous side effects can result, limiting the usefulness of these drugs.

In creating our protein products, Amgen scientists often use the techniques of genetic engineering. Starting with bacteria, yeast, or cultured animal cells, they introduce the information needed to produce a human protein with therapeutic potential. Once engineered, these cells can be grown in large quantities, often using the time-honored technique of fermentation.

During fermentation, single celled organisms such as yeasts and bacteria grow on sugars and starches. Their growth produces alcohol, carbon dioxide and other by-products. (The bubbles in alcohol in beer are a result of this process, as are the holes in bread and some cheeses.) While fermenting, engineered cells produce large quantities of another important product: the desired human protein. Depending how the cell was engineered, this protein is found either inside the cells or in the surrounding medium.

Agricultural biotechnology involves scientific methods that create, improve or modify plants and animals. This technology allows scientists to move desirable genes from one plant to another or from one animal to another. Through agricultural biotechnology, researchers transfer desirable genes (insect resistance, large muscle mass, better flavor, longer shelf life) into various plants and/or animals.

Traditional animal breeding involves selecting the best parent animals to produce desirable offspring. Animal reproduction through biotechnology includes techniques such as selecting a cattleman’s best bull and replicating it through cloning.

Traditional plant breeding involves transferring pollen containing a desired gene from one crop to another. Breeding plants through biotechnology involves adding a pest-resistant corn gene to another corn variety or to a soybean or wheat variety.

Agricultural biotechnology is the science of transferring beneficial genetic traits to improve the world’s supply of food and fiber.

Break biotechnology into its root words and you have bio — the use of biological processes; and technology — to solve problems or make useful products.

Using biological processes is hardly a new undertaking. We began growing crops and raising animals 10,000 years ago to provide a stable supply of food and clothing. We have used the biological processes of microorganisms for 6,000 years to make useful food products, such as bread and cheese, and to preserve dairy products. Why is biotechnology suddenly receiving so much attention?

During the 1960s and '70s our understanding of biology reached a point where we could begin to use the smallest parts of organisms—their cells and biological molecules—in addition to using whole organisms.

A more appropriate definition in the new sense of the word is this:

"New" Biotechnology — the use of cellular and biomolecular processes to solve problems or make products.

We can get a better handle on the meaning of the word biotechnology by simply changing the singular noun to its plural form, biotechnologies. Biotechnology is a collection of technologies that capitalize on the attributes of cells, such as their manufacturing capabilities, and put biological molecules, such as DNA and proteins, to work for us.

Cells and Biological Molecules

Cells are the basic building blocks of all living things. The simplest living things, such as yeast, consist of a single, self-sufficient cell. Complex creatures more familiar to us, such as plants, animals and humans, are made of many different cell types, each of which performs a very specific task.

In spite of the extraordinary diversity of cell types in living things, what is most striking is their remarkable similarity. This unity of life at the cellular level provides the foundation for biotechnology.

All cells have the same basic design, are made of the same construction materials and operate using essentially the same processes. DNA (deoxyribonucleic acid), the genetic material of almost all living things, directs cell construction and operation, while proteins do all the work. Because DNA contains the information for making proteins, it directs cell processes by determining which proteins are produced and coordinating their activities.

All cells speak the same genetic language. The DNA information manual of one cell can be read and implemented by cells from other living things. Because a genetic instruction to make a certain protein is universally understood by all cells, technologies based on cells and biological molecules give us great flexibility in using nature's diversity.

In addition, cells and biological molecules are extraordinarily specific in their interactions. Because of this specificity, biotechnology's tools and techniques are precise; they are tailored to operate in known, predictable ways. As a result, biotechnology products will solve specific problems, generate gentler or fewer side effects and have fewer unintended consequences. Specific, precise, predictable. Those are the words that best describe today's biotechnology.

Basically bioremediation is using microorganisms to remove pollutants from an environment. At its natural rate this process would be called biodegradation. The name bioremediation accompanies when the human factor, manipulating conditions affecting the rate, enters the picture. It is most often used for the treatment of non-toxic liquid and solid wastes, contaminated ground water, toxic and hazardous wastes and grease decomposition. It is known to be a practical and cost-effective method to remove hydrocarbons from contaminated areas. Altogether, more than 70 microbial genera are known to contain organisms that can degrade petroleum components(8, Congress Report). Since any given oil would have a diversity of compounds, obviously there is a need for the variety. Organic contaminants that make up the oil, provide energy and act as a carbon source. The microorganisms transform contaminants to less harmful compounds through aerobic and anaerobic respiration, fermentation, cometabolism and reductive dehalogenation. The microbes may demobilize the contaminants as well in 3 ways as the National Research Council (page 23) has stated:

Microbial biomass can sorb hydrophobic organic molecules. sufficient biomass grown in the path of contaminant migration could stop or slow contaminant movement. This concept is sometimes called a biocurtain.

Microorganisms can produce reduced or oxidized species that cause metals to precipitate. Fe(OH)3 , FeS precipitates would be certain examples.

Why is biotechnology important? Biotechnology is not a new science, and originated from the day man first brewed beer and baked bread. Traditional uses of biotech will continue and are crucially important to society. However, with the recent advances in DNA sequencing of genomes, particularly the human genome, biotech science is well placed to make rapid advances. The potential of biotechnology to provide new health products, new fuels such as hydrogen, advances in agriculture and management of the environment (eg. oil spill clean-up) is immense but at present only partly tapped. i, f, b, h, b. Biotechnology is well-placed to contribute significantly to future sustainable technology development.

Microorganisms can biodegrade organic compounds that bind with metals and keep the metals in solution. Unbound metals often precipitate and are immobilized.

The National Research Council divides the applications of bioremediation into two broad categories, namely intrinsic and engineered bioremediation. Intrinsic bioremediation is similar to a no-action alternative; however, monitoring and proof that microorganisms act as eliminators of contaminants is necessary. With engineered bioremediation the human factor comes into the picture. As stated in the Congress Report there are three major approaches used for bioremediation of marine oil spills: stimulation of indigenous microorganisms through addition of nutrients(fertilization), introduction of special assemblages of naturally occurring oil degrading microorganisms(seeding) and introduction of genetically engineered microorganisms(GEMs) with special oil degrading properties. Research has shown that in most cases the contaminated area contains enough variety of organisms but does not have the capacity to feed them. Therefore, using seeding methods or introducing GEMs to a site have not been widely used. Most of the experiments were administered on fertilization methods-or nutriation as some call it. After the Exxon Valdez oil spill in Alaska on March 24, 1989 , scientists had a grand opportunity to work on the unknown aspects of this technology. As Pritchard explains it, there were three main criteria in making a fertilizer selection: ease of application potential to retain position on the beaches, nutrient release characteristics and physical durability over time. Basically three modes of application were observed, briquettes, granules and liquid. Of the three, granules seemed to be the most apt method. These fertilizers contained nitrogen as a majority and also some phosphorus. So it was important to reach a level of nutrients without exceeding level of toxicity for certain marine invertebrates to survive. It is important to realize that for each site the best mode of fertilizer application would be different and that it would have to be determined specifically. Therefore, it is not possible to state one fertilizer as the ultimate method.

There are certain environmental factors that affect the bioremediation processes such as temperature, pressure, oxygen level, salinity, pH, turbulence, background concentration of inorganic nutrients and the type of contaminants. As expressed in the Congress Report most sea water is between -2 and 35¡C. Biodegradation has been recorded to be faster at the higher end of this scale. As the temperature decreases the rate decreases and sometimes decreases dramatically. Pressure seems to have an inverse effect. As pressure increases biodegradation rates have decreased. This apparently causes problems in deep oceans. Oxygen is one of the most important factors in the biodegradation process since most of the degradation is done by means of aerobic respiration. Usually it is not a limiting factor on or near surface of the ocean; however, as one goes deeper rates decrease. Factors such as pH, salinity and turbulence are known not to have major influences on the process. The presence of nutrients is one of the major factors affecting degradation. Since this has been noticed, scientists have been working on methods to solve this issue more than anything else. As a result there has been vast experimentation on fertilization techniques, as explained before. Another important factor would be related to the contaminant- its susceptibility and the complicating factors that accompany. Certain complicating factors as the National Research Council has put it, are unavailability of contaminants to the organisms, toxicity of contaminants to the organisms, presence of multiple contaminants and natural organic chemicals, incomplete degradation of contaminants and inability to remove contaminants to low concentrations. The susceptibility of the contaminant has been, however, of major concern. After long series of experimentation Hinchee and his colleagues have come to the following conclusion: within families of compounds, the more substituted the compound, the slower the rate at which the constituent was lost by degradation. Generally, these results are not inconsistent with the widely held view that the order of decreasing susceptibility to biodegradation of petroleum constituents has been n-alkanes> branched alkanes > low-molecular weight aromatics> cyclic alkanes> high-molecular weight alkanes> polar compounds. The order of biodegradation of petroleum products by Prince William Sound, Alaska microorganisms was hexadecane=napthalene> pristane> phytane> fluorenes> dibenzothiophene=phenanthrene> chrysene. It is important to note that the results have proven the general notion that phytane and pristane are difficult to degrade, incorrect.

One must view the advantages and the disadvantages of bioremediation before evaluating its efficiency. As is summarized in the Congress Report, bioremediation usually involves minimal physical disruption, has no significant adverse effects when used correctly, is helpful in removing certain toxic components of oil, offers a simpler and more thorough solution than mechanical technologies and is probably less costly than other approaches. However, it does not remain without disadvantages. It is of undetermined effectiveness for many types of spills, may not be appropriate at open sea but rather the coastlines, takes time to work, approach must be specifically tailored for each polluted site and optimization requires substantial information about spill site and oil characteristics.

What is Biotechnology?

Imagine a microorganism that will clean up ocean oil spills, a new antibiotic that can be quickly altered to combat drug-resistant strains of bacteria, or a cancer vaccine that will help prolong human life. This is biotechnology.

Biotechnology uses biological systems, such as bacteria, to create goods and services. And while it's been around for thousands of years - the use of yeast in the making of cheese, bread and beer is biotechnology - our growing understanding of DNA, the basic genetic material of living organisms, has ushered this technology into an era of new discovery.

Canada is a world leader in biotech products. From Frederick Banting and Charles Bests' discovery of life-saving insulin in 1921, to the development of 3TC, an anti-viral drug effectively used to prolong the life of people infected with the AIDS virus, in 1997, Canadians have made headlines with their biotech discoveries.

The use of a biological science to create a new product was revolutionized in the 1940s and '50s with the discovery of the role and structure of the DNA molecule. Today, the technology breaks down into six areas:

Genetic Engineering - Selective breeding and the manipulation of genes to change the characteristics of an organism. Cell Culture Technology - Growing animal and plant cells in a lab, using cultured cells as production systems. Cell Fusion Technology - Fusing cells using chemicals or electric shock to create hybrids, and using artificial cells as delivery mechanisms for new drugs and other therapies. Enzyme Technology - The use of enzymes, (enzyme proteins control all of the chemical reactions that make up life) to bio-convert, degrade or synthesize materials. Fermentation Technology - The ability to grow cells in very large quantities. Immobilization Technology - The ability to attach cells, enzymes and DNA to solid, inorganic surfaces.

According to the Biotechnology Human Resource Council, the term biotechnology was first used in Canada in 1983 to describe the "manipulation of hereditary traits manually by transferring genes from one organism to another."

Modern biotechnology refers to the tools used to identify, understand and take advantage of genetic variations in animals, plants or humans. Researchers study genes and DNA (deoxyribonucleic acid) to understand complicated biological processes that will hopefully uncover the causes of certain human diseases.

The knowledge gained from researching human genes is used to develop new and innovative ways to help and heal people suffering from a variety of diseases and to improve our quality of life.

Biotechnology has the potential of great benefits to humankind through innovations in food production, pharmaceuticals and general genetic research. Many of these areas are controversial due to a variety of deeply held beliefs, and legislation to control types of research and public information have become hot political issues throughout the world.

Biotechnology can be described in many different ways, but a straightforward definition is :

Biotechnology is the use of biological organisms or enzymes in the synthesis, breakdown or transformation of materials in the service of people.

The polymerase chain reaction has enabled scientists to make large quantities of DNA from tiny samples. This in turn has made much of the most recent and exciting DNA technology possible. The ability to sequence DNA, identifying genes and what they do, the Human Genome Project, and DNA fingerprinting – all depend for their success on this ingenious technique.

The Human Genome Project, which has sequenced the whole of the human DNA, has been a massive international effort of biotechnology. The results are being used to help design very specifically targeted pharmaceutical molecules. These will provide better treatments which can be given at lower doses. What is more, these new medicines should have relatively few side effects because they will work with our individual genetic makeup rather than against it.

The new DNA technologies are helping scientists develop many new medicines which should enable us to treat many diseases more effectively. Knowledge of the human genome is also making it easier to test for genetic diseases. Gene probes have been developed to test for known genetic disorders. What’s more, in the future it seems likely that doctors will be able to find out our genetic tendency to develop diseases like cancer and heart disease. This in turn will help us to make lifestyle plans to help us remain healthy – choosing our diets, our exercise levels and our jobs to make sure we avoid situations our genes are not well-equipped to cope with.

Biotechnology is the use of living things, or life processes to make something useful. The term was coined in 1915, and understood to include such ancient practices as brewing and baking, cheesemaking, selective breeding of plants and livestock, and later, vaccine and pharmaceutical development. In recent years (since the late 70's) it has come to indicate the application of a much more sophisticated set of techniques and tools, as our understanding of how biological things work has rapidly accelerated (especially at the level of DNA). b, a, j, j, h. These tools and techniques, taken from biochemistry, immunology, microbiology, cell biology and chemistry, are used to address a variety of problems. Public institutions and private companies are engaged in research, development and manufacturing of products and procedures in medicine (diagnostics and therapeutics), agriculture, and environmental science.

One area of biotechnology which nearly everyone has heard of is genetic engineering. We now have genetically-modified organisms ranging from bacteria to cows and sheep which produce life-saving medicines including vaccines, insulin and blood-clotting factors. Genetically-modified bacteria can even make the lung surfactant needed to save the life of a premature baby. Hundreds of thousands of people benefit from the chemicals these very special organisms produce.

Gene therapy is another area of medical biotechnology which is still in the early stages of development. The hope is that gene technology will help scientists develop ways to correct mistakes in the DNA code which lead to genetic diseases such as SCID (severe combined immunodeficiency).

Medicine also benefits from many sensitive tests which indicate the presence or absence of substances in body fluids. Biotechnological advances in the use of immobilised enzymes and monoclonal antibodies mean these tests have become increasingly rapid and accurate in recent years. A common example is the pregnancy test in the picture (left). This used to take weeks – now it can be done at home on the first day of a missed period and the results are ready in minutes!

Cloning – making genetically identical copies of an organism – is not new biotechnology. Gardeners and farmers have being cloning plants for centuries. The new developments which have caused much controversy involve the cloning of mammals, from sheep to pigs to humans. The technology holds out many exciting possibilities for producing herds of genetically modified animals making useful medicines in their milk. There is also the very real possibility of producing new tissues for transplantation which would not cause any rejection problems – because they would be cloned from the patient themselves. But there are some real concerns about the ethics of this work and society is still deciding what is the right way to go.

More controversial developments in biotechnology involve research into the use of stem cells. These cells, taken from the hollow ball of cells which make up the early human embryo, have the potential to grow and develop into new tissues or organs to replace others which are worn out or diseased. This area of biotechnology is still at a very early stage but the potential for medical advances is enormous. The use of human embryos means that it is also, for some people, very controversial.

Most of the developments in biotechnology have taken place in a very short space of time, beginning with the revelation of the structure of the DNA molecule 50 years ago. The biotechnology timeline shows just how rapidly DNA technology has developed.

What is biotechnology?

Biotechnology is a set of scientific tools which uses living things to solve problems and make products.

The use of yeasts and bacteria to make bread, beer, wine and cheese are techniques that have been used for centuries. Traditional plant and animal breeding techniques are of more recent origin. Such methods can be seen as 'biotechnology' even though the term biotechnology was not coined until 1917. So-called traditional biotechnology is also used to extract and purify active components from plants and animals to produce cosmetics, drugs and health foods.

Modern biotechnology uses new techniques which provide much more understanding of, and control over, living processes. These new approaches are producing applications such as genetically engineered crops, DNA fingerprinting and cloning.

An even newer development is the integration of biotechnology with other disciplines such as information and computer technology and materials science. This approach is producing novel products like biosensors, which provide physical objects with the sensory capabilities of living things, and gene chips in which many thousands of DNA fragments are attached to a chip for rapid screening of genetic characteristics.

The following pages in this booklet outline some of the technologies and applications that fit within the scope of biotechnology. Rather than covering the full breadth of biotechnology, this booklet focuses on the newer biotechnologies about which there may be significant social, ethical or safety issues. Many of these relate to gene technologies, such as genetic engineering.

Biotechnology is “any technique that uses living organisms or substances from those organisms, to make or modify a product, to improve plants or animals, or to develop microorganisms for specific purposes” (Office of Technology Assessment, United States Congress).

Although the term sounds contemporary, biotechnology is not new. Over 9,000 years ago, people discovered that microorganisms could be used to make bread, brew alcohol, and produce cheese. Although this process of fermentation was not thoroughly understood at the time, its use still constitutes a traditional application of biotechnology.

What is new, however, is the extent of applications and sophistication of biotechnology techniques currently employed. Researchers can manipulate living organisms and transfer genetic material between organisms. Genetic engineering, the specific modification or transfer of genetic material, underlies modern biotechnological innovation

These current applications of biotechnology are predominantly practiced in the fields of agriculture and medicine. Modern techniques allow for the production of new and improved foods. Virus resistant crop plants and animals have been developed and advances in insect resistance have been made. Biotechnology applications in the field of medicine have resulted in new antibiotics, vaccines for malaria, and improved ways of producing insulin. Diagnostic tests for detecting serious diseases such as hereditary cancers and Huntington’s chorea have been developed as well as ways of detecting and treating AIDS.

Biotechnology is also being applied in the areas of pollution control, mining and energy production. Genetically engineered microorganisms and plants are used to clean up toxic wastes from industrial production and oil spills. Biotechnology applications have also been introduced into the forestry and aquaculture industries. These strategies offer hope for conservation biologists. Genetic methods can be used to identify particular populations of endangered species. Thanks to biotechnology, minute traces of animal or plant remains can be used to track and convict poachers. Genetic analysis can help botanical gardens, zoos, and game farms improve their breeding programs by determining the genetic diversity of various plant and animal populations.

Overall, biotechnology has significantly impacted and improved the quality of life for people on this planet. And it doesn’t end there. Complementing the creative endeavors of researchers and engineers are the efforts to commercialize biotechnology products with the input of business management and marketing personnel. The expertise of intellectual property and patent lawyers are also a necessary component in the process. New career opportunities in the area of bioinformatics are on the increase.

An important part of biotechnology is food biotechnology. This involves steps from the food production process and delivery to consumption. Cheaper raw materials such as food enzymes, engineered products such as delayed-ripening tomatoes and low-saturated-fat soybean oil ensure that we are given fresher, tastier, and healthier food products at lower cost. Future developments in Biotechnology Gene therapy is a promising and active area of biotechnology. It refers to the application of genetic engineering techniques in curing diseases, especially hereditary diseases. g, g, l, i, k. Basically, a sick person may have genes from his father or mother that are defective, causing the disease. Genetic engineers can find ways to add a functional gene to the individual's cells so that he may be able to produce the needed substances that will stop the disease.

Biotechnology can be defined as the controlled and deliberate manipulation of biological systems (whether living cells or cell components) for the efficient manufacture or processing of useful products. The fact that living organisms have evolved such an enormous spectrum of biological capabilities means that by choosing appropriate organisms it is possible to obtain a wide variety of substances, many of which are useful to man as food, fuel and medicines. Over the past 30 years, biologists have increasingly applied the methods of physics, chemistry and mathematics in order to gain precise knowledge, at the molecular level, of how living cells make these substances. By combining this newly-gained knowledge with the methods of engineering and science, what has emerged is the concept of biotechnology which embraces all of the above-mentioned disciplines.

"Biotechnology is the application of scientific and engineering principles to the processing of materials by biological agents to provide goods and services" (Organization for Economic Co-operation and Development).(Takeoka GR, et al., eds. 1996)

This broad definition of biotechnology encompasses the use of traditional techniques such as the use of yeasts and bacteria for leavening, brewing, fermentation and culturing yogurt. Selective breeding of plants and animals to create more productive breeds is a form of biotechnology.

The term "biotechnology" for many people refers specifically to the genetic engineering techniques that have been developed in the past two to three decades. These techniques have beneficial applications in medicine, agriculture, food processing, food safety, waste management, and crime detection.

Biotechnology is a key technology for many industrial sectors including pharmaceuticals, diagnostics, agriculture and waste treatment. Through the application of biotechnology there have already been major developments in healthcare, including the production of new medicines, new methods for the large-scale production of existing medicines and new, more accurate diagnostic tests for diseases such as HIV. In other areas biotechnology is focusing on developing replacement processes that are less polluting and energy consuming, and provides a basis for sustainability, the concept by which Nature’s resources are recycled, thus protecting the environment.

Although the science of biotechnology has been used for some time, there is still some public confusion over the nature of the technology. In general terms, biotechnology is the use of biological processes to make useful products (including modified organisms, substances and devices). In healthcare alone, biotechnology products include those naturally produced by the body to fight disease, as well as products which are manufactured by chemical synthesis but have used biological processes and screening methods for their initial discovery.

In many ways, biotechnology is an old science. Without understanding the principles of fermentation or genetics, mankind has used some biotechnology processes since antiquity, for example, in the production of cheese, bread, alcohol, penicillin or the selective breeding of animals and plants.

It is also a new science in that, only since the 1970s, have advances in molecular biology and other sophisticated techniques enabled scientists to have a better knowledge of how individual cells and their components work in the body. This has enabled scientists to develop new methods for isolating genes and instructing cells outside the body to make large quantities of human proteins.

One of the results is medicines that are based on - or even replicate - the body’s own disease-fighting mechanisms: medicines that work with the body rather than against it. Biotech medicines are already being used in the treatment of many problems, including cancers, anaemia, heart attacks, rheumatoid arthritis, viral infections and multiple sclerosis.

The techniques of biotechnology are also being used to produce, in large quantities, substances such as Factor VIII for the treatment of haemophilia, or human growth hormone to help overcome pituitary dwarfism. Diabetes can also be treated with a biotechnology-produced version of human insulin to overcome the deficiency in sufferers. Previously, these materials had to be extracted from human and animal tissue with some difficulty and with potential risks for the patient. Biotechnology has provided a better alternative. One of the first great successes of biotechnology in healthcare has been to create a safer and more effective vaccine against Hepatitis B. New types of therapeutic vaccines are being developed to treat, rather than prevent disease, including HIV, herpes and various cancer-causing infections. Biotechnology is also leading to the development of new medicines for diseases, which, until now, have been otherwise untreatable. Beta-interferon, for example, is giving new hope to multiple sclerosis patients, where before there has been no hope of treatment.

Biotechnology is likely to come up with new therapies for many more unconquered diseases. The technology will help in the earlier diagnosis of disease and will help to identify more accurately gene abnormalities that may lead to the treatment of certain hereditary diseases.

In agriculture, biotechnology has the promise to produce foods with enhanced nutrition and flavour, and crops with increased yield. Most of today’s hard cheese products are made with an enzyme chymosin, which is produced by biotechnology. In the UK the first recombinant tomato paste was launched in supermarkets earlier this year. Biotechnology has the potential to make crops more nutritious, to taste better, last longer and naturally resist insects, viruses and herbicides. This can reduce our dependence on chemical pesticides. Therefore, Biotechnology can contribute to solving some of the World’s food problems.

What Is Biotechnology And Why Do We Need It?

Biotechnology refers to the techniques that allow scientists to modify DNA, the genetic material of living organisms, to enhance their tolerance to pests and diseases, increase yield and improve quality and nutritional value. Biotechnology can bring many benefits to medicine, the environment and industry. It also has a wide range of possible applications in food and agriculture. The benefits to agriculture include:

Improving Crop Yield

Genetically improved plants (GIPs) have been developed to be more tolerant to disease, weeds insects, and drought and be able to grow in difficult environmental conditions. Considering the devastating impact of pests, weeds and disease on yields, the agronomic and economic benefit when plants have built in tolerance is enormous.

Increasing a crop's yield enables us to use less land to produce the same amount or more food. This also allows us to preserve other lands such as native forests and delicate ecosystems for the benefit of the environment and wildlife. Without increasing crop yields more and more non-arable land will be brought into production to feed the growing population. In many cases, this land is unsuitable for long term cultivation and its use will result in environmental degradation, or the destruction of the few remaining wild lands and native forests.

Less Chemical Usage

Biotechnology can also help farmers reduce the amount of pesticides they need to use on crops. For instance, by making crops tolerant to a specific herbicide, weeds can be killed without damaging the crop. The amount of herbicide used per acre of crop can also be reduced relative to regular practices. Insect-tolerant crops not only reduce the volume of insecticide sprayed but also encourage natural and biological control by not affecting the beneficial insects. Insect-tolerant crops can form the basis of extremely effective Integrated Pest Management practices.

Improved Food Quality

Biotechnology can give our food improved quality characteristics. Scientists have the ability to improve the taste, appearance and the nutritional quality of fruits and vegetables.

Another advantage created by biotechnology is genetically improving the gene responsible for ripening. For example, delayed-ripening tomatoes reduce the waste that occurs during transport. In some countries, up to 20% of fresh produce is destroyed on the way to market due to unsuitability of these crops for transport. In India, where the food transportation sector is not completely developed and huge losses occur, delayed-ripening fruits and vegetables would benefit consumers living far from agricultural areas.

Environment Friendly

Among the environmental benefits of biotechnology is a reduction in the use of pesticides and herbicides, the prospect of more food production from the same unit of land and more nutritious food produce. In addition, scientists have developed methods utilizing biotechnology to clean up pollution (bioremediation), caused by, for instance, oil spills.

Biotechnology can be defined as making use of the natural processes or products of living things. This covers most of what we think of as biotechnology:

medical biotechnology, which uses microorganisms (such as bacteria or fungi) to make antibiotics or vaccines

industrial biotechnology, which uses microorganisms to make enzymes (e.g. to add to biological washing powders), or to produce beer, cheese or bread

environmental biotechnology, which uses microorganisms or plants to clean up land or water that is polluted with sewage or industrial waste and

agricultural biotechnology which aims to produce better crops, ‘natural’ fertilizers, or feed additive New technologies, discoveries and a better understanding of the natural processes of living organisms are extending this list almost daily to give opportunities for developing new medicines and improved products for agriculture and industry.

Defining biotechnology in agriculture and food production When we consider agriculture and food production, ‘biotechnology’ is more difficult to define. How is making milk from cows, or flour from wheat different from making antibiotics from bacteria? All these products are normally produced in Nature, but we have harnessed the natural ability of organisms that produce them for our own use. By breeding plants and animals, or choosing the best antibiotic-producing strains of bacteria or fungi, we have selected organisms with the genetic make-up that gives them the ‘improved’ characteristics we desire.

‘Traditional’ biotechnology

‘Traditional’ biotechnology is nearly as old as humankind: brewing, breadmaking and cheesemaking are all ancient ways of using natural fermentation processes of microorganisms to either preserve food produced through agriculture, or create new tastes and textures – indeed, entirely new foods. These same processes of microorganisms are used today for a wider range of applications, to produce valuable products such as antibiotics or enzymes for medicine or industry, too.

‘Modern’ biotechnology

‘Modern’ biotechnology attempts to achieve the same goals – new or better products – but more efficiently. Because we can now identify which genes code for particular characteristics, and can move the genes from one organism to another, we can achieve the most useful combination of genes in plants more quickly by genetic modification than by breeding or selection. Sometimes, genes are moved between closely related organisms – for example, from a plant that makes a particularly valuable product but only in small amounts, to a plant that has the machinery to make vast amounts of product. Alternatively, genes can be moved between very different organisms: genes for human insulin moved into bacteria provide a cheap, safe and plentiful supply of insulin to treat diabetics.

Literally speaking, biotechnology refers to the application of our knowledge of biological phenomena to serve our economic and social needs. However, this extremely broad definition is not very useful, as it embraces almost all aspects of our society from agriculture to beer and wine fermentations, to medicine, cheese and bread making, plant and animal breeding, cloning, embryo transfer, and even mining of certain metals with bacteria.

A more modern and focused definition which is more consistent with current usage would limit the term to the application of modern techniques of molecular biology and bioinformatics to solve industrial and scientific problems. However, this definition is still quite broad as it includes such applications as transgenic animals and plants, marine natural products, recombinant bacteria and fungi for the production of proteins, comparative genomics for research into evolutionary relationships and the genetic basis of disease, gene arrays for the study of gene expression and developmental biology, and the myriad applications of cell and tissue culture in research and industry.

If you were to ask 20 people this question, you would probably receive 20 differing responses. That's because biotechnology is a collection of technologies that are being deployed across a whole host of industries including: agriculture, environment, food, forestry, health, and mining.

This section is designed to provide a background to what biotechnology entails and why there is so much excitement about the biotechnology industry in general. Considering all that has been written about the industry this introduction is not meant to be all embracing. Instead, we have provided useful links in order for you to delve further into both the science and the industry itself.

Biotechnology deals with the manipulation of the DNA molecule in very precise and directed ways, generally in the context of industrial or commercial applications. The common element to the technology is the use of cells, cellular processes, and the manipulation of molecular events, in ways that achieve predictable and reproducible results. Biotechnology has many goals, including:

J Appl Microbiol, 1997 Apr, 82(4), 441 - 7
Biodegradation of aniline, anthracene, chlornitrophen, fenitrothion and linear alkylbenzene sulphonate in pond water; Nishihara T et al.; Biodegradation of five chemicals (aniline, anthracene, chlornitrophen (CNP), fenitrothion (FNT) and linear alkylbenzene sulphonate (LAS)) by aquatic bacteria in three different types of ponds was determined according to the cultivation method developed by this group . The degradability toward these chemicals was varied among the ponds, except for LAS which was decomposed well in all samples . Higher degradability towards the two agrochemicals, CNT and FNT, was found in the pond surrounded by paddy fields, whereas aniline and anthracene were decomposed more rapidly in the pond located in the industrial area . Water from the pond in the botanical garden, with the least exposure to any chemicals, exhibited the lowest degradation toward all chemicals tested . There was no significant seasonal variation in the biodegradation of chemicals in these ponds . It was deduced that biodegradability toward certain chemicals could be a result of acclimatization of the microbial community by chemical contamination present and past, suggesting the possible use of biodegradation profiles as an indicator for chemical pollution in the aquatic environment.

Protein Expr Purif, 1997 Apr, 9(3), 346 - 54
Expression, purification, and characterization of a catalytically active human cytochrome P450 1A2:rat NADPH-cytochrome P450 reductase fusion protein; Parikh A et al.; An enzymatically active human cytochrome P450 (P450) 1A2:rat NADPH-P450 reductase fusion protein was purified and partially characterized following heterologous expression in Escherichia coli . A cDNA was engineered to include the coding sequence for human P450 1A2 at its 5' end (up to but not including the stop codon) fused in-frame to the coding sequence for a truncated (soluble) rat NADPH-P450 reductase at its 3' end via an oligonucleotide sequence encoding the hydrophilic dipeptide Ser-Thr . This fusion plasmid was expressed in E . coli and the recombinant protein was purified from the detergent-solubilized membrane fraction via sequential DEAE, ADP-agarose, and hydroxylapatite chromatographies . The purified protein has the spectral characteristics of human P450 1A2 and cytochrome c reduction activity comparable to rabbit NADPH-P450 reductase . The fusion protein catalyzed 7-ethoxyresorufin O-deethylation and phenacetin O-deethylation to appreciable levels in the presence of NADPH and phospholipid . While these activities were comparable to those of other such P450:NADPH-P450 reductase fusion proteins, they were lower than those of the system reconstituted from its individual hemoprotein and flavoprotein components . Nevertheless, the production of a functional, catalytically self-sufficient monooxygenase in E . coli enhances the prospect of using bacterial systems for production and characterization of human P450 drug metabolites as well as for biodegradation of chemicals in the environment.

Chemosphere, 1997 Apr, 34(8), 1813 - 22
The ISO Headspace CO2 Biodegradation Test; Battersby NS; Two published methods for evaluating the aerobic biodegradability of organic compounds by measuring inorganic carbon (CO2) production in sealed vessels, under a headspace of air were combined into one protocol . This was ring tested in 1995 by the International Organization for Standardization (ISO) using aniline and 1-octanol as the test substances . This paper describes the ISO method and discusses the results of the inter-laboratory calibration exercise in terms of the method's precision and performance.

Biomaterials, 1997 Apr, 18(7), 567 - 75
In vitro and in vivo degradation of films of chitin and its deacetylated derivatives; Tomihata K et al.; Chitin was deacetylated to various extents with NaOH to obtain partially and thoroughly deacetylated chitins . The specimens used in this study were deacetylated by 0 (chitin), 68.8, 73.3, 84.0, 90.1 and 100 mol% (chitosan) . Films with a thickness of 150 microns were prepared from these specimens by the solution casting method . The equilibrated water contents of the films were 52.4 (chitin), 73.8 (68.8 mol%), 64.2 (73.3 mol%), 61.8 (84.0 mol%), 57.8 (90.1 mol%) and 49.7 wt% (chitosan), while the tensile strengths of the water-swollen films were 244 (chitin), 197 (68.8 mol%), 232 (73.3 mol%), 320 (84.0 mol%), 293 (90.1 mol%) and 433 g mm-2 (chitosan) . The maximum water content and the minimum tensile strength observed for a specimen deacetylated between 0 and 68.8 mol% may be ascribed to the lowered crystallinity by deacetylation of chitin, since both chitin and chitosan are crystalline polymers . Unlike their physical properties, in vitro and in vivo degradations of these films occurred less rapidly without passing a maximum or minimum, as their degree of deacetylation became higher . The in vitro degradation was carried out by immersing the films in buffered aqueous solution of pH 7 containing lysozyme at 37 degrees C, while the in vivo degradation was studied by subcutaneously implanting the films in the back of rats . It was found that the rate of in vivo biodegradation was very high for chitin and 68.8 mol% deacetylated chitin, compared with that for the 73.3 mol% deacetylated chitin . The films which were more than 73.3 mol% deacetylated showed slower biodegradation . Interestingly, the tissue reaction towards highly deacetylated derivatives including chitosan was very mild, although they had cationic primary amines in the molecule.

Artif Organs, 1997 Apr, 21(4), 287 - 92
Myristoyl gelatin as a sealant for Dacron vascular prostheses; Sasajima T et al.; Myristoyl gelatin (MG) retains its gel structure at temperatures above body temperature without any crosslinking . As a coating material, MG adheres well to polyester fibers, and the outermost layers of the sealant that are in contact with blood or surrounding tissue become hydrophilic . We produced MG-impregnated knitted Dacron vascular prostheses (MG graft {MGG}) and investigated the usefulness of MG as a sealant by replacing the thoracic aorta of dogs . MGGs (5 cm long with an inner diameter of 10 mm) were implanted in 5 mongrel dogs (10-20 kg), and the grafts were retrieved at intervals of 4 h and 2, 4, 8, and 15 weeks after grafting . There was no thrombus formation on the flow surface of the MGGs, indicating adequate antithrombogenic properties . No resorption of MG occurred until after 2 weeks, and neither immune reaction nor excessive foreign body reaction was noted . Fragmentation of the sealant induced by cell infiltration began to occur at 4 weeks, yet the sealing effect persisted . The organization of MGG was almost complete at 8 weeks . Because of its pliability and effective adhesion to polyester fibers, its antithrombogenicity, and the persistent sealing effect due to delayed biodegradation and resorption, we conclude that MG is an extremely useful sealant for polyester vascular prostheses.

J Biomed Mater Res, 1997 Mar 15, 34(4), 519 - 30
Role of oxygen in biodegradation of poly(etherurethane urea) elastomers; Schubert MA et al.; It is generally accepted that biodegradation of poly(etheruethane urea) (PEUU) involves oxidation of the polyether segments on the surface where leukocytes are adhered . The influence of dissolved oxygen, which is known to control oxidation of polymers in more traditional environments, was explored in this study . Specimens treated in vitro with hydrogen peroxide-cobalt chloride for 12 days exhibited a brittle, degraded surface layer about 10 microm thick . Attenuated total reflectance-Fourier transform infrared spectroscopy of the surface revealed that the ether absorbance at 1110 cm(-1) gradually decreased with in vitro treatment time to 30% of its initial value after 12 days . In contrast, 6 days in vitro followed by 6 days in air produced a decrease to 12% of the initial volume . Therefore, removing a specimen from the in vitro solution after 6 days and exposing it to air for the remainder of the 12 days actually resulted in more oxidation than leaving it in the in vitro solution for the entire 12 days . These results suggest that PEUU degrades by an autooxidation mechanism sustained by oxygen . By successfully modeling the depth of the surface degraded layer with a diffusion-reaction model, it was demonstrated that PEUU biodegradation is controlled by diffusion of oxygen into the polymer.

J Biomed Mater Res, 1997 Mar 15, 34(4), 493 - 505
Comparison of two antioxidants for poly(etherurethane urea) in an accelerated in vitro biodegradation system; Schubert MA et al.; Vitamin E (+/-alpha-tocopherol) was recently investigated as an antioxidant for implanted poly(etherurethane urea) (PEUU) elastomers . In that work, vitamin E prevented chemical degradation of biaxially strained PEUU up to 5 weeks implantation, and prevented pitting and cracking of the PEUU surface for the duration of the 10-week cage implant study . The promising results of the in vivo studies motivated a detailed comparison of vitamin E with Santowhite, the standard antioxidant used in PEUU elastomers . To evaluate vitamin E and Santowhite as antioxidants in PEUU, an accelerated in vitro treatment system was used that mimics the in vivo degradation of PEUUs . Vitamin E was even more effective than Santowhite in preventing pitting and cracking to the biaxially strained PEUU elastomers . The inhibition of ether oxidation was greater with vitamin E than with Santowhite when compared by equivalent concentrations and molar concentrations, respectively . It is hypothesized that the increased effectiveness of vitamin E in this system, compared to Santowhite, is due to differences in antioxidant mechanism(s) . Vitamin E is more efficient in preventing PEUU oxidation than Santowhite because its phenoxy radical is more stable and it can terminate more than one chain per vitamin E molecule.

Chem Biol, 1997 Mar, 4(3), 215 - 21
Construction and characterization of a manganese-binding site in cytochrome c peroxidase: towards a novel manganese peroxidase; Yeung BK et al.; BACKGROUND: Manganese-binding sites are found in several heme peroxidases, namely manganese peroxidase (MnP), chloroperoxidase, and the cationic isozyme of peanut peroxidase . The Mn-binding site in MnP is of particular interest . Oxidation of Mn(II) to Mn(III) is a key step in the biodegradation of lignin, a complex phenylpropanoid polymer, as well as many aromatic pollutants . Cytochrome c peroxidase (CcP), which is structurally homologous to MnP despite a poor sequence homology, does not bind manganese . Thus, engineering a Mn-binding site into CcP will allow us to elucidate principles behind designing metal-binding sites in proteins, to understand the structure and function of this class of Mn-binding centers, and to prepare novel enzymes that can degrade both lignin and other xenobiotic compounds . RESULTS: Based on a comparison of the crystal structures of CcP and MnP, a site-directed triple mutant (Gly41-->Glu, Val45-->Glu, His181-->Asp) of residues near the putative Mn-binding site in CcP was prepared and purified to homogeneity . Titrating MnSO4 into freshly prepared mutant CcP resulted in electronic absorption spectral changes similar to those observed in MnP . The calculated apparent dissociation constant and the stoichiometry of Mn-binding of CCP were also similar to MnP . Titration with MnSO4 resulted in the disappearance of specific paramagnetically shifted nuclear magnetic resonance spectroscopy signals assigned to residues close to the putative Mn-binding site in the mutant CcP . None of the spectral features were observed in wild-type CcP . In addition, the triple mutant was capable of oxidizing Mn(II) at least five times more efficiently than the native CcP . CONCLUSIONS: A Mn-binding site has been created in CcP and based on our spectroscopic studies the designed Mn-binding site is similar to the Mn-binding site in MnP . The results provide a basis for understanding the structure and function of the Mn-binding site and its role in different heme peroxidases.

Chem Biol, 1997 Mar, 4(3), 169 - 74
Diverse mechanistic approaches to difficult chemical transformations: microbial dehalogenation of chlorinated aromatic compounds; Copley SD; Chlorinated aromatic compounds represent an important class of environmental pollutants . Microbial dehalogenases play a crucial role in the biodegradation of these compounds . The three major classes of aromatic dehalogenases are discussed in this minireview.

Invest Ophthalmol Vis Sci, 1997 Mar, 38(3), 665 - 75
Ganciclovir-loaded polymer microspheres in rabbit eyes inoculated with human cytomegalovirus; Veloso AA Jr et al.; PURPOSE: To test the antiviral effect of ganciclovir released from biodegradable polymer microspheres in rabbit eyes inoculated with human cytomegalovirus (HCMV) . METHODS: Human cytomegalovirus (5 x 10(3) plaque forming unit in 0.1 ml Hank's balanced salt solution) was inoculated 4 days after gas compression vitrectomy . Injected after 2 days was 10 mg of 300- to 500-micron ganciclovir-loaded microspheres (89.77 micrograms ganciclovir/mg) suspended in 0.1 ml of 2% hydroxypropylmethylcellulose . Blank microspheres were injected as control specimens . Vitritis, retinitis, and optic neuritis were graded from 0(+)-4+ for 14 days to separate the early HCMV-induced disease events from later nonspecific host inflammatory responses . Ganciclovir-loaded microspheres also were injected and observed for biodegradation and tissue reaction for 8 weeks . RESULTS: In eyes injected with ganciclovir-loaded microspheres, vitritis decreased from days 3 to 14, and retinitis and optic neuritis decreased from days 3 to 9 . In eyes injected with blank microspheres, vitritis increased from days 3 to 7, retinitis increased from days 3 to 9, and optic neuritis increased from days 3 to 14 . Immunofluorescence of HCMV antigens in retinal tissues was shown only in eyes injected with blank microspheres . Histopathologic analysis showed minimal focal disruption of the retinal architecture in eyes injected with ganciclovir-loaded microspheres . Disorganization of the normal retinal architecture was observed in eyes injected with blank microspheres . No adverse tissue reaction was observed clinically and histopathologically in eyes injected with ganciclovir-loaded microspheres after 8 weeks . CONCLUSIONS: Ten milligrams of 300 to 500 microns ganciclovir-loaded poly(D,L-lactide-co-glycolide) microspheres control the progression of fundus disease in HCMV-inoculated rabbit eyes.

J Bacteriol, 1997 Mar, 179(6), 1974 - 9
Purification and molecular characterization of the electron transfer protein of methanesulfonic acid monooxygenase; Higgins TP et al.; A novel serine pathway methylotroph, strain M2, capable of utilizing methanesulfonic acid (MSA) as a sole source of carbon and energy was investigated . The initial step in the biodegradative pathway of MSA in strain M2 involved an inducible NADH-specific monooxygenase enzyme (MSAMO) . Fractionation of MSAMO active cell extracts by ion-exchange chromatography led to the loss of MSAMO activity . Activity was restored by mixing three distinct protein fractions, designated A, B, and C . Further purification to homogeneity of component C indicated that the polypeptide was acidic, with a pI of 3.9, and contained an iron-sulfur center with spectral characteristics similar to those of other proteins containing Rieske {2Fe-2S} centers . The size of the protein subunit and the similarity of the N-terminal sequence to those of ferredoxin components of other oxygenase enzymes have suggested that component C is a specific electron transfer protein of the MSAMO which contains a Rieske {2Fe-2S} cluster . The gene encoding component C of MSAMO was cloned and sequenced, and the predicted protein sequence was compared with those of other Rieske {2Fe-2S}-center-containing ferredoxins . MSAMO appears to be a novel combination of oxygenase elements in which an enzyme related to aromatic-ring dioxygenases attacks a one-carbon (C1) compound via monooxygenation.

Appl Environ Microbiol, 1997 Mar, 63(3), 819 - 26
New metabolites in the degradation of fluorene by Arthrobacter sp . strain F101; Casellas M et al.; Identification of new metabolites and demonstration of key enzyme activities support and extend the pathways previously reported for fluorene metabolism by Arthrobacter sp . strain F101 . Washed-cell suspensions of strain F101 with fluorene accumulated 9-fluorenone, 4-hydroxy-9-fluorenone, 3-hydroxy-1-indanone, 1-indanone, 2-indanone, 3-(2-hydroxyphenyl) propionate, and a compound tentatively identified as a formyl indanone . Incubations with 2-indanone produced 3-isochromanone . The growth yield with fluorene as a sole source of carbon and energy corresponded to an assimilation of about 34% of fluorene carbon . About 7.4% was transformed into 9-fluorenol, 9-fluorenone, and 4-hydroxy-9-fluorenone . Crude extracts from fluorene-induced cells showed 3,4-dihydrocoumarin hydrolase and catechol 2,3-dioxygenase activities . These results and biodegradation experiments with the identified metabolites indicate that metabolism of fluorene by Arthrobacter sp . strain F101 proceeds through three independent pathways . Two productive routes are initiated by dioxygenation at positions 1,2 and 3,4, respectively . meta cleavage followed by an aldolase reaction and loss of C-1 yield the detected indanones . Subsequent biological Baeyer-Villiger reactions produce the aromatic lactones 3,4-dihydrocoumarin and 3-isochromanone . Enzymatic hydrolysis of the former gives 3-(2-hydroxyphenyl) propionate, which could be a substrate for a beta oxidation cycle, to give salicylate . Further oxidation of the latter via catechol and 2-hydroxymuconic semialdehyde connects with the central metabolism, allowing the utilization of all fluorene carbons . Identification of 4-hydroxy-9-fluorenone is consistent with an alternative pathway initiated by monooxygenation at C-9 to give 9-fluorenol and then 9-fluorenone . Although dioxygenation at 3,4 positions of the ketone apparently occurs, this reaction fails to furnish a subsequent productive oxidation of this compound.

J Biol Chem, 1997 Feb 14, 272(7), 3986 - 92
Effector specificity mutants of the transcriptional activator NahR of naphthalene degrading Pseudomonas define protein sites involved in binding of aromatic inducers; Cebolla A et al.; This work reports a genetic analysis of the interactions between NahR, the LysR-type regulator of the NAH operons for biodegradation of naphthalene in Pseudomonas, and its aromatic effectors . Six mutants encoding NahR variants responsive to salicylate analogs such as benzoate, which is not an inducer for the wild type regulator, were isolated with a polymerase chain reaction-based saturation mutagenesis protocol . Most mutants displaying a specific change of effector profile bore single amino acid substitutions within a short protein segment of 60 residues located at the central portion of the NahR sequence . Some of the protein variants exhibited an increased affinity for salicylate and also for otherwise suboptimal effectors, with apparent Ks' values 5-100-fold lower than those of the wild type NahR protein . In addition, all mutants were activated by inducers bearing novel substituents at positions 1 or 2 of the aromatic ring and displayed also an enhanced tolerance to changes at positions 3 and 4 . Correlation between mutations in NahR and the structures of the new effectors suggested that protein sites Met116, Arg132, Asn169, and Arg248 are involved in effector recognition and binding during the earlier steps of the process leading to transcriptional activation of cognate NAH promoters.

J Ind Microbiol Biotechnol, 1997 Feb-Mar, 18(2-3), 161 - 9
Transformations of TNT and related aminotoluenes in groundwater aquifer slurries under different electron-accepting conditions; Krumholz LR et al.; The transport and fate of pollutants is often governed by both their tendency to sorb as well as their susceptibility to biodegradation . We have evaluated these parameters for 2,4,6-trinitrotoluene (TNT) and several biodegradation products . Slurries of aquifer sediment and groundwater depleted TNT at rates of 27, 7.7 and 5.9 microM day-1 under methanogenic, sulfate-reducing and nitrate-reducing conditions, respectively . Abiotic losses of TNT were determined in autoclaved controls . Abiotic TNT loss and subsequent transformation of the products was also observed . These transformations were especially important during the first step in the reduction of TNT . Subsequent abiotic reactions could account for all of the transformations observed in bottles which were initially nitrate-reducing . Other controls removed TNT reduction products at much slower rates than slurries containing live organisms . 2-Amino-4,6-dinitrotoluene was produced in all slurries but disappeared in methanogenic and in sulfate-reducing slurries within several weeks . This compound was converted to 2,4-diamino-6-nitrotoluene in all slurries with subsequent removal of the latter from methanogenic and sulfate-reducing slurries, while it persisted in autoclaved controls and in the nitrate-reducing slurries . Aquifer slurries incubated with either 2,4- or 2,6-diaminotoluene showed losses of these compounds relative to autoclaved controls under nitrate-reducing conditions but not under sulfate-reducing or methanogenic conditions . These latter compounds are important as reduced intermediates in the biodegradation of dinitrotoluenes and as industrial chemicals . In experiments to examine sorption, exposure to landfill sediment resulted in losses of approximately 15% of diaminotoluene isomers and 25% of aminodinitrotoluene isomers from initial solution concentrations within 24 h . Isotherms confirmed that the diaminotoluenes were least strongly sorbed and the amino-dinitrotoluenes most strongly sorbed to this sediment, while TNT sorption capacity was intermediate . In our studies, 2,4,6-triaminotoluene sorption capacity was indeterminate due to its chemical instability . Coupled with biodegradation information, isotherms help describe the likelihood of contaminant removal, persistence, and movement at impacted sites.

Chemosphere, 1997 Feb, 34(2), 429 - 46
Comparison of the QSAR models for toxicity and biodegradability of anilines and phenols; Damborsky J et al.; Structure-activity models for toxicity and biodegradability of groups of m-anilines and p-phenols were developed and compared . Hydrophobicity was the most important property in determining toxicity . Whereas, electronic and steric properties were the more important in modeling biodegradation.

J Trauma, 1997 Feb, 42(2), 177 - 82
Use of a porcine dermis template to enhance widely expanded mesh autologous split-thickness skin graft growth: preliminary report; Wang HJ et al.; To answer the question whether a xenograft dermal substitute could enhance skin grafting, we used porcine dermis as a template for a widely expanded mesh autologous split-thickness skin (ASTS) graft in a rat model . Four groups of rats had received widely expanded meshed skin autografts to cover an excised back wound . Group 1 had a bed of autologous dermis, group 2 had porcine xenograft dermis, group 3 had widely expanded meshed autograft alone, and group 4 had no graft with the wound healing by contraction alone . Wounds were studied by clinical inspection for texture and contraction, and by histologic and immunofluorescent techniques . At 2 weeks, there was acceptable ASTS graft take, and most of the wound healed completely by 3 weeks . The integrity of this complex skin graft was maintained for 4 months but wound contraction gradually decreased overall wound size . Size was maintained better in the ASTS-autodermis and ASTS-xenodermis groups at postgraft 4, 5, and 6 weeks when compared with the ASTS graft, and there was no difference between the ASTS-autodermis and ASTS-xenodermis groups . Thus both allodermis and xenodermis provided a similar template to enhance widely expanded mesh skin growth and delay wound contraction . The pathologic studies indicate that the xenodermis collagen was replaced either by fibrosis or by biodegradation to rat collagen . The immunofluorescent study also reflected that anti-porcine antibody activity was hugely diminished in the ASTS-xenodermis graft wound after long-term follow-up . In conclusion, either autodermis or xenodermis enhances widely expanded mesh ASTS survival in a rat model, and could significantly maintain the original wound size better than ASTS graft without a template . In a long-term follow-up study, the porcine dermis was replaced either by fibrosis or biodegradation to rat dermis.

Nat Biotechnol, 1997 Feb, 15(2), 174 - 7
Plant cell biodegradation of a xenobiotic nitrate ester, nitroglycerin; Goel A et al.; The ability of plants to metabolize the xenobiotic nitrate ester, glycerol trinitrate (GTN, nitroglycerin), was examined using cultured plant cells and plant cell extracts . Intact cells rapidly degrade GTN with the initial formation of glycerol dinitrate (GDN) and the later formation of glycerol mononitrate (GMN) . A material balance analysis of these intermediates indicates little, if any, formation of reduced, conjugated or cell-bound carbonaceous metabolites . Cell extracts were shown to be capable of degrading GTN with the simultaneous formation of GDN in stoichiometric amounts . The intermediates observed, and the timing of their appearance, are consistent with a sequential denitration pathway that has been reported for the microbial degradation of nitrate esters . The degradative activities of plant cells are only tenfold less than those reported for bacterial GTN degradation . These results suggests that plants may serve a direct degradative function for the phytoremediation of sites contaminated by organic nitrate esters.

J Chromatogr A, 1997 Jan 31, 760(2), 285 - 91
High-performance liquid chromatographic analysis of a linear alkylbenzenesulfonate and its environmental biodegradation metabolites; Sarrazin L et al.; A simple and fast method is described for determining a linear alkylbenzenesulfonate (LAS) and its potential sulfonated and unsulfonated metabolites in natural waters . This method includes extraction of 60 ml of water with an octadecyl-bonded silica (C18) mini-column and analysis of the extract by high-performance liquid chromatography . A reversed-phase column with a 0.008 M potassium phosphate buffer (pH 2.2)-acetonitrile gradient as the mobile phase provides the separation . A UV detector, set at 215 nm, is employed.

Biomed Chromatogr, 1997 Jan-Feb, 11(1), 50 - 3
Metabolism and bioaccumulation of fenvalerate and its metabolites in rat organs; Misra S et al.; Metabolism and bioaccumulation of fenvalerate and its fenvalerate its metabolites in liver, kidney and brain of rat following the oral administration of a sub-lethal dose (15 mg/kg) of the pesticide for 7, 15 and 30 day periods was investigated by high-performance liquid chromatography (HPLC) in terms of the relative mole concentrations in rat tissues . The cleavage of the ester linkage in fenvalerate yielding two metabolites was found to be primary step in the biodegradation of fenvalerate in rat organs . These metabolites were purified to homogeneity by HPLC and characterized by infra-red spectroscopy as 4-chloro-alpha-(1-methylethyl) benzeneacetic acid and 3-phenoxy benzoic acid.

Biomaterials, 1997 Jan, 18(1), 37 - 45
Application of macromolecular additives to reduce the hydrolytic degradation of polyurethanes by lysosomal enzymes; Tang YW et al.; Of the various polymers used in medical devices, polyurethanes have been relatively successful because of their acceptable mechanical and biological properties . However, over the past decade, increasing concerns have arisen in relation to long-term biostability of polyurethanes when exposed to the harsh environment of the human body . Lysosomal enzymes released from inflammatory cells have been proposed to be important mediators in the degradation of biomedical polyurethanes . In order to increase the biostability of polyurethanes to lysosomal enzymes, a series of surface-modifying macromolecules (SMMs) were synthesized in this work and then combined into a base polyurethane to reduce the material's susceptibility to hydrolysis . X-ray photoelectron spectroscopy (XPS) studies showed that the SMMs were enriched within the upper 10 nm of the surface . In vitro biodegradation test results indicated that the degradation of a polyester-urea-urethane could be inhibited by the new SMM surface . It was also found that different SMM formulations provided varying degrees of inhibition against the biodegradation of the polyester-urea-urethane . Certain formulations of the SMMs were shown to be physically incompatible with the polyurethane and distorted surface morphology to the extent that biodegradation was enhanced.

J Microencapsul, 1997 Jan-Feb, 14(1), 35 - 49
In vitro biodegradation of polyhydroxybutyrate-hydroxyvalerate microcapsules exposed to Hank's buffer, newborn calf serum, pancreatin and synthetic gastric juice; Atkins TW et al.; Spherical microporous reservoir-type microcapsules, fabricated using a W/O/W double emulsion technique with solvent evaporation and composed of 330 kD poly(beta-hydroxybutyrate-hydroxyvalerate (P(HB-HV)) (10.8% HV)/20% PCL II containing a range of bovine serum albumin (BSA) loadings, were incubated in Hank's buffer, pH 7.4, newborn calf serum (NCS), 1.5% pancreatin and synthetic gastric juice containing 10% pepsin over 30 days, and their percentage weight loss (PWL) and change in ultrastructural morphology monitored by gravimetry and stereoscan electron microscopy (SEM), respectively . The greatest percentage weight loss from microcapsules was observed after incubation in NCS and decreased in the other NCS > pancreatin > synthetic gastric juice > Hank's buffer . Only 5, 10 and 15% bovine serum albumin (BSA) loaded microcapsules incubated in Hank's buffer and synthetic gastric juice showed a significant increase in PWL with increasing percentage BSA loading . The overall sequence of changes in structural morphology due to biodegradation occurred at different rates in the different 'physiological' media . An initial increase in micropore diameter was followed by the coalescence of microspores to form macroporous pits (Hank's buffer) . Further biodegradation in NCS, pancreatin and synthetic juice was characterized by significant surface and bulk erosion . Only in pancreatin and NCS did biodegradation proceed to a loss of spherical shape and partial (pancreatin) and almost total (NCS) disruption of microcapsule structure after 30 days.

Appl Environ Microbiol, 1997 Jan, 63(1), 329 - 31
Nylon biodegradation by lignin-degrading fungi; Deguchi T et al.; The biodegradation of nylon by lignin-degrading fungi was investigated . The fungus IZU-154 significantly degraded nylon-66 membrane under ligninolytic conditions . Nuclear magnetic resonance analysis showed that four end groups, CHO, NHCHO, CH3, and CONH2, were formed in the biodegraded nylon-66 membranes, suggesting that nylon-66 was degraded oxidatively.

J Biomed Mater Res, 1997 Jan, 34(1), 73 - 8
An in vivo study of the biodegradation of the hydrophilic Mitrathane; Maurin N et al.; The present study analyzes the kinetics of the in vivo degradation of hydrophilic Mitrathane in the peritoneal cavity of mice over a period ranging from 1 to 180 days . The mechanical milling of the polyurethane films produced regularly flattened fragments that in vivo spontaneously oriented into piles . The morphological observations and analysis with the aid of an image analysis system demonstrated that after seven days of swelling the polymer fragments undergo a continuous degradation that leads to an irregular thinning and phagocytosis of the smaller fragments by macrophages with very little chronic inflammation response from surrounding tissues.

Rev Environ Contam Toxicol, 1997, 149, 87 - 137
Environmental assessment of the alkanolamines; Davis JW et al.; This review provides a summary of current information available on the environmental fate and aquatic toxicology of the alkanolamines . Because these materials are widely used, there is a need to understand their fate and effects in the environment . This assessment was confined to information regarding selected physical properties of the alkanolamines as well as their potential for degradation in the atmosphere, soil, surface water, and groundwater . In addition, their relevant aquatic toxicological information and bioconcentration potential were evaluated . In general, the alkanolamines have high water solubilities and low to moderate vapor pressures . Some are solids whereas others are liquids at room temperature . Aqueous solutions of the alkanolamines are basic, with the pKas decreasing with increased alkyl substitution . Predictions of the environmental distribution of these compounds, based on a unit world model of Mackay and Paterson, suggested that alkanolamines would partition primarily into the aqueous compartment at equilibrium, with the remainder distributed to the atmosphere . Only a very small fraction of these materials is expected to sorb to soil or sediments . However, adsorption mechanisms other than partitioning into the soil organic layer were not considered in this model . Since polar compounds may sorb to soil by alternate mechanisms, this model may underestimate the true adsorption potential and subsequent environmental distribution of the alkanolamines . Future work with these compounds should focus on other types of adsorption mechanisms that could impact the environmental distribution of the alkanolamines . Although only small amount of the alkanolamines are expected to partition to the atmosphere, they are expected to be removed by reactions with photochemically generated hydroxyl radicals . They may also be removed from the atmosphere by precipitation, due to their high water solubility . Because of the relatively low levels expected to be present in the atmosphere and the relatively short half-lives, the alkanolamines are not expected to adversely impact air quality . Alkanolamines have also been shown to be highly susceptible to biodegradation and are not expected to persist in the environment . Results from numerous studies have shown that these materials undergo rapid biodegradation in soil, surface waters, and wastewater treatment plants . Degradation rates for these compounds may vary, with half-lives routinely in the range of 1 d to 2 wk, depending on the length of acclimation period and other environmental factors . The relatively low bioconcentration factor (BCF) values reported for the alkanolamines indicate that they would not be expected to bioconcentrate in aquatic organisms . Available data on the toxicity of the alkanolamines to aquatic organisms suggest low toxicity to the majority of the species studied . Based on the facts that alkanolamines exhibit low aquatic toxicity, are shown to biodegrade in a wide range of environments, and exhibit no tendency to bioaccumulate, the routine manufacturing, use, and disposal of these materials are not expected to adversely impact the environment . With increased emphasis by consumers and regulatory agencies for industry to develop products that are "environmentally friendly," these properties of the alkanolamines make them an attractive choice for a wide range of applications.

Appl Microbiol Biotechnol, 1996 Dec, 46(5-6), 451 - 63
Biodegradation of polyhydroxyalkanoic acids; Jendrossek D et al.; Stimulated by the commercial availability of bacteriologically produced polyesters such as poly{(R)-3-hydroxybutyric acid}, and encouraged by the discovery of new constituents of polyhydroxyalkanoic acids (PHA), a considerable body of knowledge on the metabolism of PHA in microorganisms has accumulated . The objective of this essay is to give an overview on the biodegradation of PHA . The following topics are discussed: (i) general considerations of PHA degradation, (ii) methods for identification and isolation of PHA-degrading microorganisms, (iii) characterization of PHA-degrading microorganisms, (iv) biochemical properties of PHA depolymerases, (v) mechanisms of PHA hydrolysis, (vi) regulation of PHA depolymerase synthesis, (vii) molecular biology of PHA depolymerases, (viii) influence of the physicochemical properties of PHA on its biodegradability, (ix) degradation of polyesters related to PHA, (x) biotechnological aspects of PHA and PHA depolymerases.

Chemosphere, 1996 Dec, 33(12), 2411 - 21
Physical factors negatively affecting evaluation of long-term biodegradation experiments of polychlorinated biphenyls; Zachar P et al.; Behaviour of PCB added in the form of a technical mixture (Delor 106) and {14C}PCB 77 into different aqueous model cultivation media in long-term experiments was studied . The work was focused on monitoring PCB recovery from liquid media in the absence of micro-organisms . GC-ECD and radioanalysis were utilised for determination of PCB in the examined systems . Strong relations between duration of experiments, composition of media, degree of chlorination of biphenyls, and recovery of PCB were found . The lowest yields of PCB were observed for the extracts from model solutions based on N-limited cultivation media without veratryl alcohol and Tween 80 . The addition of these components, mainly of Tween 80, caused a significant increase of PCB recoveries.

Improving our understanding of inheritance and gene expression Improving our understanding and treatment of genetic disorders (and some diseases) Providing economic benefits in agriculture and the production of biological molecules Increase livestock productivity. Developing biodegradable plastics and innovative biomaterials Decreasing water and air pollution

In order to achieve the required results in these areas you have to know how each system works in the first place. Understanding how cells function lie at the very heart of biotechnology and why it has become so important as we head into the 21st century. Scientists have developed sophisticated ways that are enabling them to unravel the mysteries of life in all its marvellous forms. In so doing, they are opening up opportunities for the commercial exploitation of these discoveries such as those identified above.

Biotechnology in Action: It has been discovered that certain forms of cancer arise from the fact that normal cells fail to respond to the genetic instructions that cause them to enter a natural process of committing suicide. This cell death process is happening in our bodies all the time as old cells, that have served their useful purpose, are removed and replaced with new ones. When the genetic "switches" regulating the normal cell death process fail, instead of being removed, pre-cancerous cells remain and often grow unrestrained. Our knowledge has raised intense interest in the value of producing drugs to control the death regulating machinery. If we could design a drug that would safely reactivate the "death signals" in a cancer cell, without affecting normal tissues, then the cancer would be removed from the body.

This is why programmed cell death (apoptosis) is rapidly becoming one of the hottest areas of biotechnology. The past five years have witnessed an explosion of research efforts in the study of how cells die. By elucidating the molecular mechanisms underlying apoptosis, researchers believe that they will be able to define the mechanisms of certain diseases and develop new pharmaceuticals to aid in their treatment. (AEgera Therapeutics and Gemin X Biotechnologies, in the CMDF portfolio, are both involved in apoptosis research.)

It is stories such as this that is capturing our imagination about biotechnology. Numerous studies report that we have entered an era that has been called the new bioeconomy where major diseases that reap such a devastating toll on humanity are rapidly being unravelled through the use of molecular biology and genetic analysis.

The most simple definition available is that Biotechnology is the use of biological processes to solve problems and to make useful products. On this definition we have been using Biotechnology for thousands of years. We have used the biological processes of micro-organisms to brew beer and wine, and to make foods like bread and cheese.

Major advances in science from the 1950s, and particularly in the last years of the 20th century, have extended the reach of Biotechnology so that its applications today would seem the stuff of science fiction to the early pioneers of the 1950s. These advances have given rise to what many now call "New" Biotechnology - the use of cellular and biomolecular processes to solve problems or make useful products. This collection of technologies now capitalizes on the attributes of cells, such as their manufacturing capabilities, and uses the properties of biological molecules such as DNA and proteins in productive ways to synthesise outcomes for the benefit of all. A Biotech Guide is available.

Some world-wide examples of Biotechnology in practice today include:

the hundreds of drug products and vaccines targeting a myriad of diseases including Alzheimer's disease, heart disease, diabetes, multiple sclerosis, AIDS and arthritis the hundreds of medical diagnostic tests to detect medical conditions early enough for them to be successfully treated agricultural products such as pest-resistant corn that have been developed using biotechnology the use of biotechnology to remediate hazardous waste industrial applications such as the use of enzymes in laundry detergent DNA fingerprinting in forensic situations

Biotechnology is the "science of harnessing the natural and biological capabilities of plants, animals, and microbes for the benefit of people". Generally, biotechnology can be divided into the traditional and the new, or advanced, biotechnologies

Traditional Biotechnology When man first thought of agriculture, traditional biotechnology took form. The selection and cross-breeding of different varieties of grain to produce healthier plants is an example of biotechnology that is still being used today. The same thing is being done with horses and livestock. The process of fermenting malt into beer using certain microbes is another example of traditional biotechnology.

Advanced Biotechnology The traditional methods have been improved upon with the help of scientists called genetic engineers. They work with the genetic material called DNA ( Deoxyribonucleic acid ), a "coding system" found in all living things that controls the features an organism will have. The DNA is grouped together into genes that contain instructions on specific actions, like the production of nutrients in fruits, or the ability of yeast to ferment sugar into alcohol. In genetic engineering, the genes responsible for the desired feature of an organism may be enhanced. Furthermore, beneficial genes can be transferred from one organism to another, as in cross-pollination, but this time in a more direct manner.

What has modern Biotechnology done for me? Biotechnology has probably affected us through most of our lives. When we were young, we were immunized against diseases such as hepatitis B and measles. These vaccines were produced with the aid of biotechnology. When we got sick, the antibiotics that doctors gave us came from bacteria. Even some of the food we eat are biotechnological products. For example, the enzyme chymosin, used to curdle milk into cheese, is now being produced through biotechnology, whereas before, we derived this from the stomachs of slaughtered cows.

Our environment also benefits from biotechnological advances. Toxin- and metal-eating microbes are being developed to clean up polluted waters and industrial waste. Genetic markers have been made to help in the identification of endangered animal species. Endangered plants can be mass-propagated using current techniques. Biodegradable packaging, an alternative to plastics and paper, has also been produced.

 






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