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What Is Genetic Engineering?Genetic engineering is a laboratory technique used by scientists to change the DNA of living organisms. DNA is the blueprint for the individuality of an organism. The organism relies upon the information stored in its DNA for the management of every biochemical process. The life, growth and unique features of the organism depend on its DNA. The segments of DNA which have been associated with specific features or functions of an organism are called genes. Molecular biologists have discovered many enzymes which change the structure of DNA in living organisms. Some of these enzymes can cut and join strands of DNA. Using such enzymes, scientists learned to cut specific genes from DNA and to build customized DNA using these genes. They also learned about vectors, strands of DNA such as viruses, which can infect a cell and insert themselves into its DNA. With this knowledge, scientists started to build vectors which incorporated genes of their choosing and used the new vectors to insert these genes into the DNA of living organisms. Genetic engineers believe they can improve the foods we eat by doing this. For example, tomatoes are sensitive to frost. This shortens their growing season. Fish, on the other hand, survive in very cold water. Scientists identified a particular gene which enables a flounder to resist cold and used the technology of genetic engineering to insert this 'anti-freeze' gene into a tomato. This makes it possible to extend the growing season of the tomato. What are the Dangers? Fundamental Weaknesses of the Concept Imprecise Technology—A genetic engineer moves genes from one organism to another. A gene can be cut precisely from the DNA of an organism, but the insertion into the DNA of the target organism is basically random. As a consequence, there is a risk that it may disrupt the functioning of other genes essential to the life of that organism. Side Effects—Genetic engineering is like performing heart surgery with a shovel. Scientists do not yet understand living systems completely enough to perform DNA surgery without creating mutations which could be harmful to the environment and our health. They are experimenting with very delicate, yet powerful forces of nature, without full knowledge of the repercussions. Widespread Crop Failure—Genetic engineers intend to profit by patenting genetically engineered seeds. This means that, when a farmer plants genetically engineered seeds, all the seeds have identical genetic structure. As a result, if a fungus, a virus, or a pest develops which can attack this particular crop, there could be widespread crop failure. Threatens Our Entire Food Supply—Insects, birds, and wind can carry genetically altered seeds into neighboring fields and beyond. Pollen from transgenic plants can cross-pollinate with genetically natural crops and wild relatives. All crops, organic and non-organic, are vulnerable to contamination from cross-pollinatation. (Emberlin et al 1999) Health Hazards No Long-Term Safety Testing—Genetic engineering uses material from organisms that have never been part of the human food supply to change the fundamental nature of the food we eat. Without long-term testing no one knows if these foods are safe. Toxins—Genetic engineering can cause unexpected mutations in an organism, which can create new and higher levels of toxins in foods. Allergic Reactions—Genetic engineering can also produce unforeseen and unknown allergens in foods. Decreased Nutritional Value—Transgenic foods may mislead consumers with counterfeit freshness. A luscious-looking, bright red genetically engineered tomato could be several weeks old and of little nutritional worth. Antibiotic Resistant Bacteria—Genetic engineers use antibiotic-resistance genes to mark genetically engineered cells. This means that genetically engineered crops contain genes which confer resistance to antibiotics. These genes may be picked up by bacteria which may infect us. Problems Cannot Be Traced—Without labels, our public health agencies are powerless to trace problems of any kind back to their source. The potential for tragedy is staggering. Side Effects can Kill—37 people died, 1500 were partially paralyzed, and 5000 more were temporarily disabled by a syndrome that was finally linked to tryptophan made by genetically-engineered bacteria. (Mayeno 1994) Environmental Hazards Increased use of Herbicides—Scientists estimate that plants genetically engineered to be herbicide-resistant will greatly increase the amount of herbicide use. (Benbrook 1999) Farmers, knowing that their crops can tolerate the herbicides, will use them more liberally. More Pesticides—GE crops often manufacture their own pesticides and may be classified as pesticides by the EPA. This strategy will put more pesticides into our food and fields than ever before. Ecology may be damaged—The influence of a genetically engineered organism on the food chain may damage the local ecology. The new organism may compete successfully with wild relatives, causing unforeseen changes in the environment. Gene Pollution Cannot Be Cleaned Up—Once genetically engineered organisms, bacteria and viruses are released into the environment it is impossible to contain or recall them. Unlike chemical or nuclear contamination, negative effects are irreversible. DNA is actually not well understood. 97% of human DNA is called junk because scientists do not know its function. The workings of a single cell are so complex, no one knows the whole of it. Yet the biotech companies have already planted millions of acres with genetically engineered crops, and they intend to engineer every crop in the world. The concerns above arise from an appreciation of the fundamental role DNA plays in life, the gaps in our understanding of it, and the vast scale of application of the little we do know. Even the scientists in the Food and Drug administration have expressed concerns. A first introduction to genetic engineering About genes Genes are at the very heart of life. Together they constitute the blueprint of an organism. In computer terms they are the master program of life. They decide all the properties and all the capabilities of an organism. In biological terms this master program is called the hereditary substance, the chromosomes. It is constituted by chains of so called DNA molecules that carry the "code words" or instructions of the master program. There is an identical set of this master program in every cell. For example a corn plant has about a billion cells, each with a set of this master program. In different parts of the plants different parts of the program are active, giving rise to different structures like the leaves, the seeds and the root. The cell is like a huge computer network, much larger than any man-made one. Science has a very incomplete understanding how this billion of master programs is able to cooperate in a very harmoniously and effectively coordinated way. Methods Mol Med, 2004, 98, 33 - 46Production and characterization of receptor-specific TNF muteins; Ameloot P et al.; Tumor necrosis factor (TNF) is a pleiotropic cytokine with a wide range of biological activities including cytotoxicity, immune-cell proliferation, and mediation of inflammatory responses . Mutational analysis of mature TNF has been facilitated by the high expression levels that were obtained in Escherichia coli cells . Furthermore, the fact that mature TNF does not form inclusion bodies, but remains soluble in bacterial extracts, allows a fast and easy characterization . We describe an efficient method for the introduction of a specific mutation in mature murine TNF making use of double-stranded plasmid DNA and two oligonucleotides . Two in vitro protocols are given that allow assessment of the binding of wild-type TNF and/or TNF muteins to TNF receptors (TNFR) (radioligand competition binding and Biacore) . The biological activity of wild-type TNF and/or TNF muteins can be assessed in cellular assays . TNF-induced cytotoxicity toward murine L929s cells and human Kym39A6 cells is mediated by interaction with cellular TNFR-I, whereas TNF-induced proliferation of murine CT6 cells is mediated by triggering of cellular TNFR-II. Plant Physiol, 2004 Apr, 134(4), 1654 - 61 Epub 2004 Apr 02. Molecular characterization of cytokinin-responsive histidine kinases in maize . Differential ligand preferences and response to cis-zeatin; Yonekura-Sakakibara K et al.; Genes for cytokinin-responsive His-protein kinases (ZmHK1, ZmHK2, and ZmHK3a) were isolated from maize (Zea mays) . Heterologous expression of each of the ZmHKs in Escherichia coli having the DeltarcsC and cpslacZ genetic background conferred cytokinin-inducibility of lacZ expression on the bacteria . In the recombinant E . coli system, ZmHK1 and ZmHK3a were more sensitive to free-base cytokinins than to the corresponding nucleosides; isopentenyladenine was most effective for ZmHK1, while ZmHK2 tended to be most sensitive to trans-zeatin and the riboside . In contrast to a known cytokinin receptor of Arabidopsis (AHK4/CRE1/WOL), all ZmHKs responded to cis-zeatin (cZ), which generally is believed to be inactive or only weakly active . In cultured maize cells, expression of ZmRR1, a cytokinin-inducible response regulator, was induced by cZ as well as by trans-zeatin . These results strongly suggest that maize cytokinin receptors differ in ligand preference, and that cZ is an active cytokinin at least in maize. Domest Anim Endocrinol, 2004 May, 26(4), 315 - 28 Endotoxin challenge increases xanthine oxidase activity in cattle: effect of growth hormone and vitamin E treatment; Kahl S et al.; In addition to its basic role in the metabolism of purine nucleotides, xanthine oxidoreductase (XOR) is involved in the generation of oxygen-derived free radicals and production and metabolic fate of nitric oxide (NO) . Growth hormone (GH) and Vitamin E (E) have been shown previously to modify immune response to infection . Our objective was to determine in heifers the effect of endotoxin challenge (LPS; 3.0 microg/kg BW, i.v . bolus, Escherichia coli 055:B5) on xanthine oxidase (XO) activity in plasma and liver and the modification of this response by daily treatment with recombinant GH (0.1 mg/kg BW, i.m., for 12 days) or GH+E (E: mixed tocopherol, 1000 IU/heifer, i.m., for 5 days) . In experiment 1, 16 heifers ( 348.7 +/- 6.1 kg) were assigned to control (C, daily placebo injections), GH, or GH+E treatments and were challenged with two consecutive LPS injections (LPS1 and LPS2, 48 h apart) . After LPS1, plasma XO activity increased 290% (P < 0.001) at 3 h, reached peak (430%) at 24 h and returned to basal level by 48 h after LPS2 . XO responses (area under the time x activity curve, AUC) were greater after LPS1 than LPS2 (P< 0.001) . Total plasma XO responses to LPS (AUC, LPS1+LPS2) were augmented 55% (P < 0.05) over C with GH treatment but diminished to C responses in GH+E . There was a linear relationship (r2 = 0.605, P < 0.001) between total response in plasma XO activity and plasma nitrate + nitrate concentration . In experiment 2, 24 heifers ( 346 +/- 6 kg) were assigned to C or GH treatments and liver biopsy samples were obtained at 0, 3, 6, and 24h after a single LPS challenge . Hepatic XO activities increased 63.3% (P < 0.05) 6 h after single LPS challenge and remained elevated at 24 h (100.1%, P < 0.01) but were not affected by GH treatment . Results indicate that LPS-induced increases in plasma XO activity could be amplified by previous GH treatment but attenuated by E administration . The data also suggest that E may be effective in controlling some mediators of immune response associated with increased production of NO via the effect on XO activity and its production of superoxide anion as well as uric acid. Curr Opin Microbiol, 2004 Apr, 7(2), 157 - 62 Control of the alternative sigma factor sigmaE in Escherichia coli; Ades SE; Signal transduction pathways that communicate information from the cell envelope to the cytoplasm of bacteria are crucial to maintain cell envelope homeostasis . In Escherichia coli, one of the key pathways that ensures the integrity of the cell envelope during stress and normal growth is controlled by the alternative sigma factor sigmaE . Recent studies have elucidated the signal transduction pathway that activates sigmaE in response to misfolded outer membrane porins . Unfolded porins trigger the degradation of the sigmaE-specific antisigma factor RseA by the sequential action of two inner membrane proteases, leading to release of sigmaE from RseA, and induction of the stress response . This mechanism of signal transduction, regulated intramembrane proteolysis, is used in transmembrane signaling pathways from bacteria to humans. Curr Opin Microbiol, 2004 Apr, 7(2), 145 - 50 Control of SecA and SecM translation by protein secretion; Nakatogawa H et al.; SecA, the protein translocation ATPase of E . coli is subject to secretion-defect-response control . SecM (secretion monitor) encoded by the 5' region of the secM-secA mRNA is involved in this regulation . SecM translation is subject to transient elongation arrest at Pro166, which is prolonged when export of the nascent SecM is blocked . An "arrest sequence", FXXXXWIXXXXGIRAGP, was identified at a carboxy-terminal region of SecM that interacts with the ribosomal exit tunnel . Presumably, the stalled ribosome disrupts the secondary structure of the secM-secA mRNA such that the Shine-Dalgarno sequence for translation of secA is exposed . Mutation studies established that the SecM elongation arrest is required for the viability of E . coli as well as for constitutive (in secretion-proficient cells) and upregulated (in secretion compromised cells) expression of SecA . Furthermore, evidence suggests that elongation-arresting SecM has a role of upregulating the functionality of newly synthesized SecA molecules, presumably by bringing the mRNA to the vicinity of the membrane/Sec translocation apparatus . These results are discussed in relation to the versatile nature of SecA in its localization and structure. Curr Opin Microbiol, 2004 Apr, 7(2), 140 - 4 Controlling mRNA stability and translation with small, noncoding RNAs; Storz G et al.; Recent studies have led to the identification of more than 50 small regulatory RNAs in Escherichia coli . Only a subset of these RNAs has been characterized . However, it is clear that many of the RNAs, such as the MicF, OxyS, DsrA, Spot42 and RyhB RNAs, act by basepairing to activate or repress translation or to destabilize mRNAs . Basepairing between these regulatory RNAs and their target mRNAs requires the Sm-like Hfq protein which most likely functions as an RNA chaperone to increase RNA unfolding or local target RNA concentration . Here we summarize the physiological roles of the basepairing RNAs, examine their prevalence in bacteria and discuss unresolved questions regarding their mechanisms of action. Biochem Biophys Res Commun, 2004 Apr 30, 317(2), 654 - 61 A putative twin-arginine translocation pathway in Legionella pneumophila; De Buck E et al.; Legionella pneumophila is a facultative intracellular human pathogen causing Legionnaires' disease, a severe form of pneumonia . Because of the importance of secretion pathways in virulence, we were interested in the possible presence of the twin-arginine translocation (Tat) pathway in L . pneumophila . This secretion pathway is used to transport folded proteins, characterized by two arginines in their signal peptide, across the cytoplasmic membrane . We describe here the presence of a putative Tat pathway in L . pneumophila . Three genes encoding Escherichia coli TatA, TatB, and TatC homologues were identified . The tatA and tatB genes were shown to constitute an operon while tatC is monocistronic . RT-PCR analysis revealed expression of the tat genes during both exponential and stationary growth as well as during intracellular growth in Acanthamoeba castellanii . A search for the conserved twin-arginine motif in predicted signal peptides resulted in a list of putative Tat substrates. Biochem Biophys Res Commun, 2004 Apr 30, 317(2), 634 - 8 Cloning and expression of mycobacterial glutamine synthetase gene in Escherichia coli; Singh J et al.; Extracellular glutamine synthetase (GS) is one of the prominent proteins secreted by pathogenic mycobacteria such as Mycobacterium tuberculosis and Mycobacterium bovis . Non-pathogenic species like Mycobacterium smegmatis and Mycobacterium phlei do not secrete this protein . GS has been proposed to play an indispensable role in intracellular survival of pathogenic mycobacteria . In this study, the structural gene for extracellular glutamine synthetase of M . tuberculosis was PCR amplified and expressed as fusion protein with hexahistidine residues in Escherichia coli . Expression of GS in E . coli under transcriptional regulation of T5 promoter yielded an insoluble protein aggregating to form inclusion bodies . The inclusion bodies were solubilized in presence of 8 M urea and the enzyme was purified to homogeneity under denaturing conditions using nitrilotriacetic acid (Ni-NTA) affinity chromatography . The denatured protein was renatured by gradual removal of the urea while immobilized on (Ni-NTA) column . The yield of purified recombinant glutamine synthetase was 40 mg/L . The purified recombinant enzyme was obtained in highly active state having specific activity of 200 U/mg protein . This is the first report describing cloning and expression of mycobacterial glutamine synthetase gene in E . coli. Biochem Biophys Res Commun, 2004 Apr 30, 317(2), 578 - 85 The ManR specifically binds to the promoter of a Nramp transporter gene in Anabaena sp . PCC 7120: a novel regulatory DNA motif in cyanobacteria; Huang W et al.; The Anabaena sp . PCC 7120 ManR and a homologous protein of MntH were identified by BLAST search . Recombinant ManR protein was overexpressed in Escherichia coli and purified by an immobilized metal (Ni) affinity chromatography . Electrophoretic mobility shift assays revealed that ManR specifically bound to the promoter region of the mntH gene . Site-directed mutagenesis experiments demonstrated that the specific recognition site for ManR is TATGAAAAGAATATGAGAA, which is composed of two direct repeats of the consensus sequence (T/A)ATGA(G/A)A(A/G) . This is a novel regulatory DNA motif in cyanobacteria, indicating that the expression of mntH was regulated by a two-component Mn(2+)-Sensing System containing ManR in Anabaena sp . PCC 7120 . To date, this specific pathway of regulating mntH expression has only been found in cyanobacteria. Biochem Biophys Res Commun, 2004 Apr 30, 317(2), 531 - 8 Gene cloning and overproduction of an aminopeptidase from Streptomyces septatus TH-2, and comparison with a calcium-activated enzyme from Streptomyces griseus; Arima J et al.; An aminopeptidase secreted from Streptomyces septatus TH-2 (SSAP) was identified as a heat stable enzyme, and the Ssap gene was cloned and sequenced . The primary structure of SSAP showed 71% identity with that of a Streptomyces griseus aminopeptidase (SGAP), however, it lacked a unique calcium binding site . The recombinant SSAP was overexpressed in the culture supernatant of Escherichia coli harboring pET-KmS2 . A comparison of recombinant SSAP and SGAP showed that both enzymes are different in terms of modulation by calcium and substrate specificity . The activity of SSAP was not modulated by calcium, while SGAP is a calcium-activated enzyme . SSAP catalyzed the hydrolysis of L-Lys-pNA efficiently whereas the reaction rate for L-Lys-pNA hydrolysis of SGAP was significantly low . Furthermore, in SGAP, the presence of Ca2+ decreased the reaction rate of L-Lys-pNA hydrolysis . SSAP also had different pKas s of reaction from that of SGAP, although almost all the residues which compose the active site were conserved in both enzymes . This result indicates that SSAP has a different environment of substrate binding and active sites from those of SGAP. Biochem Biophys Res Commun, 2004 Apr 30, 317(2), 321 - 9 Activity of the isolated HIV RNase H domain and specific inhibition by N-hydroxyimides; Hang JQ et al.; This report describes a procedure to generate enzymatically active, isolated HIV RNase H domain . In contrast to previously described preparations, the RNA cleavage activity of the untagged RNase H domain was surprisingly similar to that of the full-length HIV-RT protein . Signature cleavages at 18 and 9 nucleotides downstream of a recessed RNA 5'-end were retained with the isolated RNase H domain . Activity was strongly decreased by deletion of 3 amino acids from the C-terminus, consistent with an important structural or functional role of the C-terminal alpha-helix . A prototype N-hydroxyimide (2-hydroxy-4H-isoquinoline-1,3-dione) was found to inhibit the activity of the isolated HIV RNase H domain as well as the RNase H activity of full-length HIV reverse transcriptase . In contrast, the compound did not significantly inhibit the structurally closely related Escherichia coli RNase HI . Specific binding of N-hydroxyimide compounds to the isolated RNase H domain was observed by protein fluorescence quenching. FEBS Lett, 2004 Apr 9, 563(1-3), 234 - 40 Multiple feedback loops are key to a robust dynamic performance of tryptophan regulation in Escherichia coli; Venkatesh KV et al.; Living systems must adapt quickly and stably to uncertain environments . A common theme in cellular regulation is the presence of multiple feedback loops in the network . An example of such a feedback structure is regulation of tryptophan concentration in Escherichia coli . Here, three distinct feedback mechanisms, namely genetic regulation, mRNA attenuation and enzyme inhibition, regulate tryptophan synthesis . A pertinent question is whether such multiple feedback loops are "a case of regulatory overkill, or do these different feedback regulators have distinct functions?" Another moot question is how robustness to uncertainties can be achieved structurally through biological interactions . Correlation between the feedback structure and robustness can be systematically studied by tools commonly employed in feedback theory . An analysis of feedback strategies in the tryptophan system in E . coli reveals that the network complexity arising due to the distributed feedback structure is responsible for the rapid and stable response observed even in the presence of system uncertainties. FEBS Lett, 2004 Apr 9, 563(1-3), 213 - 8 Interaction of actin and its 11-amino acid C-terminal peptide as cofactors with the adenovirus proteinase; Brown MT et al.; Actin bound to the adenovirus proteinase (AVP) with a lower equilibrium dissociation constant, 4.2 nM, than those exhibited by two viral, nuclear cofactors for AVP, the 11-amino acid peptide pVIc and the viral DNA . The k(cat)/K(m) ratio for substrate hydrolysis by AVP increased 150,000-fold in the presence of actin . The 11-amino acid residue peptide corresponding to the C-terminus of actin, which is highly homologous to pVIc, bound to AVP and stimulated its activity in the presence of DNA . As a cellular cofactor for AVP, AVP(actin) complexes may facilitate the cleavage of cytoskeletal proteins, preparing the infected cell for lysis and release of nascent virions. FEBS Lett, 2004 Apr 9, 563(1-3), 191 - 6 Glutaminyl cyclases unfold glutamyl cyclase activity under mild acid conditions; Schilling S et al.; N-terminal pyroglutamate (pGlu) formation from glutaminyl precursors is a posttranslational event in the processing of bioactive neuropeptides such as thyrotropin-releasing hormone and neurotensin during their maturation in the secretory pathway . The reaction is facilitated by glutaminyl cyclase (QC), an enzyme highly abundant in mammalian brain . Here, we describe for the first time that human and papaya QC also catalyze N-terminal glutamate cyclization . Surprisingly, the enzymatic Glu(1) conversion is favored at pH 6.0 while Gln(1) conversion occurs with an optimum at pH 8.0 . This unexpected finding might be of importance for deciphering the events leading to deposition of highly toxic pyroglutamyl peptides in amyloidotic diseases. FEBS Lett, 2004 Apr 9, 563(1-3), 146 - 50 cis-Effect of DnaJ on DnaK in ternary complexes with chimeric DnaK/DnaJ-binding peptides; Han W et al.; Chimeric peptides, comprising a DnaK-binding sequence of L-amino acid residues (motif k) and an exclusive DnaJ-binding sequence of D-amino acid residues (motif j) connected through a 22-residue linker, were examined as minisubstrates for the DnaK chaperone system . The DnaJ-stimulated ATPase activity of DnaK was three times higher in the presence of the chimeric peptides pjk or pkj than in the simultaneous presence of the corresponding single-motif peptides ala-p5 (k motif) plus D-p5 (j motif) . Apparently, pjk and pkj mimic unfolded proteins by forming ternary (ATP x DnaK) x peptide x DnaJ complexes which favor cis-interaction of DnaJ with DnaK . Consistent with this interpretation, the specific stimulatory effect of the chimeric peptides was abolished by either single-motif peptide in excess. FEBS Lett, 2004 Apr 9, 563(1-3), 55 - 8 Systematic single base-pair substitution analysis of DNA binding by the cAMP receptor protein in cyanobacterium Synechocystis sp . PCC 6803; Omagari K et al.; The cAMP receptor protein SYCRP1 in cyanobacterium Synechocystis sp . PCC 6803 is a regulatory protein that binds to the consensus DNA sequence (5'-AAATGTGATCTAGATCACATTT-3') for the cAMP receptor protein CRP in Escherichia coli . Here we examined the effects of systematic single base-pair substitutions at positions 4-8 (TGTGA) of the consensus sequence on the specific binding of SYCRP1 . The consensus sequence exhibited the highest affinity, and the effects of base-pair substitutions at positions 5 and 7 were the most deleterious . The result is similar to that previously reported for CRP, whereas there were differences between SYCRP1 and CRP in the rank order of affinity for each substitution. J Biotechnol, 2004 Apr 8, 109(1-2), 193 - 9 Thiophilic interaction chromatography for supercoiled plasmid DNA purification; Sandberg LM et al.; Supercoiled plasmid DNA was selectively purified from its open circular form by thiophilic interaction chromatography, performed in the presence of high concentrations of water-structuring salts . To identify optimal conditions for purification, various aromatic thioether ligands were coupled to a chromatographic support and screened for their ability to separate plasmid isoforms from each other and from other host cell contaminants, including RNA, genomic DNA, protein, and endotoxins . Selectivity of the chromatographic medium depended on the structure of the ligands, with characteristics of the substituents on the aromatic ring determining the resolution between the different plasmid DNA isoforms . Optimal resolution was obtained with ligands consisting of an thioaromate, substituted with highly electronegative groups . When 2-mercaptopyridine was used as a ligand, the difference in conductivity for eluting open circular and supercoiled plasmid DNA is only 6 mS/cm . However, with 4-nitrothiophol the resolution for plasmid DNA separation on the media increased, resulting in a 20 mS/cm difference . When used in combination with a prior group separation step, these aromatic thioether ligands facilitated the isolation of highly purified supercoiled plasmid DNA, suitable for use in gene therapy and DNA vaccine applications. J Biotechnol, 2004 Apr 8, 109(1-2), 31 - 43 Evaluation of bottlenecks in proinsulin secretion by Escherichia coli; Mergulhao FJ et al.; This work evaluates three potential bottlenecks in recombinant human proinsulin secretion by Escherichia coli: protein stability, secretion capacity and the effect of molecular size on secretion efficiency . A maximum secretion level of 7.2 mg g(-1) dry cell weight was obtained in the periplasm of E . coli JM109(DE3) host cells . This value probably represents an upper limit in the transport capacity of E . coli cells secreting ZZ-proinsulin and similar proteins with the protein A signal peptide . A selective deletion study was performed in the fusion partner and no effect of the molecular size (17-24 kDa) was detected on secretion efficiency . The protective effect against proteolysis provided by the ZZ domain was thoroughly demonstrated in the periplasm of E . coli and it was also shown that a single Z domain is able to provide the same protection level without compromising the downstream processing . The use of this shorter fusion partner enables a 1.6-fold increase in the recovery of the target protein after cleavage of the affinity handle. Vaccine, 2004 Mar 29, 22(11-12), 1545 - 52 Leptospiral immunoglobulin-like proteins elicit protective immunity; Koizumi N et al.; The identification of new vaccine candidates for leptospirosis is of great interest . This paper describes the identification of two homologous immunogenic proteins, LigA-m and LigB-m, of Leptospira interrogans serovar manilae strain UP-MMC-NIID, which show strong similarity with LigA found recently in L . interrogans serovar pomona . Southern blot analysis indicated the conservation of the lig genes among pathogenic leptospires . LigA-m protein was shown to be a surface-exposed lipoprotein expressed during in vitro culture . Both LigA-m and LigB-m induced protective immunity against a challenge with a homologous serovar of L . interrogans in mice . Furthermore, patients' sera infected with heterologous serovars' strains contained antibodies against LigA-m and LigB-m . Our results suggest that LigA-m and LigB-m proteins are new vaccine candidates for the prevention of leptospirosis. FEMS Microbiol Lett, 2004 Apr 15, 233(2), 353 - 9 Structure and mode of transposition of Tn2555 carrying sucrose utilization genes; Doroshenko VG et al.; The sucrose transposon Tn2555 from Escherichia coli, which has an unstable structure, was studied in more detail . Sequence analysis of one of the transposon variants, designated Tn2555.3, revealed the presence of two direct IS26 copies on its flanks, and a third inverted IS26 copy inside the transposon . The sucrose utilization genes of Tn2555.3 were found to be identical to those of the previously described pUR400 plasmid . It was demonstrated that Tn2555.3 translocation from pBR325 to RP4 occurs via a cointegrate formation, mediated by one of the three IS26 copies, followed by its resolution due to RecA-dependent recombination between two direct IS26 copies flanking the donor replicon. Biochim Biophys Acta, 2004 Apr 8, 1698(1), 97 - 105 Secondary structure and backbone dynamics of Escherichia coli diacylglycerol kinase, as revealed by site-directed solid-state 13C NMR; Yamaguchi S et al.; To gain insight into secondary structure and backbone dynamics, we have recorded (13)C NMR spectra of {3-(13)C}Ala-, {1-(13)C}Val-labeled Escherichia coli diacylglycerol kinase (DGK), using cross-polarization-magic angle spinning (CP-MAS) and single-pulse excitation with dipolar decoupled-magic angle spinning (DD-MAS) methods . DGK was either solubilized in n-decyl-beta-maltoside (DM) micelle or integrated into 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) or 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) bilayers . Surprisingly, the (13)C NMR spectra were broadened to yield rather featureless peaks at physiological temperatures, both in DM solution or lipid bilayers at liquid crystalline phase, due to interference of motional frequencies of DGK with frequencies of magic angle spinning (MAS) or proton decoupling (10(4) or 10(5) Hz, respectively) . In gel phase lipids, however, up to six distinct (13)C NMR peaks were well-resolved due to lowered fluctuation frequencies (<10(5) Hz) for the transmembrane region, the amphipathic alpha-helices and loops . While DGK can be tightly packed in gel phase lipids, DGK is less tightly packed at physiological temperatures, where it becomes more mobile . The fact that the enzymatic activity is low under conditions where motion is restricted and high when conformational fluctuations can occur suggests that acquisition of low frequency backbone motions, on the microsecond to millisecond time scale, may facilitate the efficient enzymatic activity of DGK. Ann Thorac Surg, 2004 Apr, 77(4), 1222 - 7; discussion 1227 Overexpressed nuclear factor kappaB correlates with enhanced expression of interleukin-1beta and inducible nitric oxide synthase in aged murine lungs to endotoxic stress; Chang CK et al.; BACKGROUND: Transcriptional regulation is a major determinant of interleukin-1beta (IL-1beta) protein synthesis . Nuclear factor kappaB (NF-kappaB) plays a central role in the regulation of IL-1beta and subsequent IL-1beta-dependent inflammatory processes . Previously, we observed in a murine endotoxic stress model a progressive increase with age in the amount of IL-1beta mRNA . We test the aging pulmonary response of NF-kappaB and NF-kappaB-dependent genes, IL-1beta, and inducible nitric oxide synthase (iNOS) in the same model . METHODS: Young (2-month-old) and senescent (25-month-old) mice were given 0.5 mg/kg lipopolysaccharide (LPS) intraperitoneally . Lung and blood samples were harvested after 4 hours . IL-1beta production in blood samples and the expression levels of protein and mRNA of IL-1beta and iNOS in lung tissues were measured . NF-kappaB binding activity in lung tissues was also determined . RESULTS: LPS induced higher levels of IL-1beta in the sera and lungs of senescent mice over young mice . Northern and Western blot analyses showed that mRNA and protein signals of IL-1beta and iNOS were significantly higher in old lungs than in young lungs . Electrophoretic mobility shift assay also showed that NF-kappaB activation was significantly higher in the older animals . CONCLUSIONS: Our results suggest that elevated activation of NF-kappaB, at least in part, contributes to the dysregulated expression of IL-1beta and iNOS in the lungs of senescent animals . Thus increased expression of proinflammatory cytokines and inflammatory responsive genes in the lung may play a role in the increased susceptibility in aging animals to endotoxic stress. Mutat Res, 2004 Apr 14, 548(1-2), 47 - 52 On the participation of RecB in the induction of mini-Tn10 precise excision in a dnaB thermosensitive mutant; Chan A et al.; Precise excision of transposons Tn10 and mini-Tn10 is increased in the dnaB252 thermosensitive mutant of Escherichia coli K12, at the permissive temperature . DNA repair proteins like Pol II, RecF, Ruv and RecA were found to participate, to different extents, in this induced excision event . In this work we report that DNA repair-recombination protein RecBCD has a predominant role in this deletion process . The role of this and other repair proteins in DNA replication of the dnaB mutant in relation to the excision of the transposon is analyzed. Mutat Res, 2004 Apr 14, 548(1-2), 9 - 18 Specificity of spontaneous mutations induced in mutA mutator cells; Balashov S et al.; Escherichia coli cells expressing the mutA allele of a glyV (glycine tRNA) gene express a strong mutator phenotype . The mutA allele differs from the wild type glyV gene by a base substitution in the anticodon such that the resulting tRNA misreads certain aspartate codons as glycine, resulting in random, low-level Asp-->Gly substitutions in proteins . Subsequent work showed that many types of mistranslation can lead to a very similar phenotype, named TSM for translational stress-induced mutagenesis . Here, we have determined the specificity of forward mutations occurring in the lacI gene in mutA cells as well as in wild type cells . Our results show that in comparison to wild type cells, base substitutions are elevated 23-fold in mutA cells, as against a eight-fold increase in insertions and a five-fold increase in deletions . Among base substitutions, transitions are elevated 13-fold, with both G:C-->A:T and A:T-->G:C mutations showing roughly similar increases . Transversions are elevated 35-fold, with G:C-->T:A, G:C-->C:G and A:T-->C:G elevated 28-, 13- and 27-fold, respectively . A:T-->T:A mutations increase a striking 348-fold over parental cells, with most occurring at two hotspot sequences that share the G:C-rich sequence 5'-CCGCGTGG . The increase in transversion mutations is similar to that observed in cells defective for dnaQ, the gene encoding the proofreading function of DNA polymerase III . In particular, the relative proportions and sites of occurrence of A:T-->T:A transversions are similar in mutA and mutD5 (an allele of dnaQ) cells . Interestingly, transversions are also the predominant base substitutions induced in dnaE173 cells in which a missense mutation in the alpha subunit of polymerase III abolishes proofreading without affecting the 3'-->5' exonuclease activity of the epsilon subunit. Virology, 2004 Apr 25, 322(1), 199 - 210 Mapping the site of guanylylation on VP1, the protein primer for infectious pancreatic necrosis virus RNA synthesis; Xu HT et al.; VP1, the putative virion-associated RNA-dependent RNA polymerase (RdRp) of infectious pancreatic necrosis virus (IPNV) can be guanylylated in vitro whereupon it becomes a primer for in vitro RNA synthesis {Virology 208 (1995) 19} . The role of a template or other virion polypeptides in the reaction is unknown . To shed light on this question, his-tagged recombinant VP(1) (rVP1) was expressed both in Escherichia coli and insect cells and used in the guanylylation reaction . Unlike other viral VPg polypeptides, the purified rVP1 alone could guanylylate itself in vitro in a template-independent manner . Chemical and enzymatic cleavage in combination with site-directed mutagenesis mapped the site of guanylylation to serine 163 . The purified rVP1 functioned as a primer as well as an RdRp in vitro, producing labeled dsRNA in the presence of {alpha(32)P} NTP and synthetically produced viral ss + RNA as a template . Only a single cycle of replication was observed and labeled VPg could be recovered from the dsRNA by RNase V(1) digestion . Denaturation of the dsRNA yielded genome-length labeled ssRNA, indicating that RNA synthesis was not initiated by 3'-end snap-back self-priming . Mutating serine 163 to alanine of rVP1 abolished both its self-guanylylating and polymerizing activity. Biochem Cell Biol, 2004 Apr, 82(2), 275 - 84 A study of the relationships of interactions between Asp-201, Na+ or K+, and galactosyl C6 hydroxyl and their effects on binding and reactivity of beta-galactosidase; Xu J et al.; The interactions between Na+ (and K+) and Asp-201 of beta-galactosidase were studied . Analysis of the changes in Km and Vmax showed that the Kd for Na+ of wild type beta-galactosidase (0.36 +/- 0.09 mM) was about 10x lower than for K+ (3.9 +/- 0.6 mM) . The difference is probably because of the size and other physical properties of the ions and the binding pocket . Decreases of Km as functions of Na+ and K+ for oNPG and pNPG and decreases of the Ki of both shallow and deep mode inhibitors were similar, whereas the Km and Ki of substrates and inhibitors without C6 hydroxyls remained constant . Thus, Na+ and K+ are important for binding galactosyl moieties via the C6 hydroxyl throughout catalysis . Na+ and K+ had lesser effects on the Vmax . The Vmax of pNPF and pNPA (substrates that lack a C6 hydroxyl) did not change upon addition of Na+ or K+, showing that the catalytic effects are also mediated via the C6 hydroxyl . Arrhenius plots indicated that Na+, but not K+, caused k3 (degalactosylation) to increase . Na+ also caused the k2 (galactosylation) with oNPG, but not with pNPG, to increase . In contrast, K+ caused the k2 values with both oNPG and pNPG to increase . Na+ and K+ mainly altered the entropies of activation of k2 and k3 with only small effects on the enthalpies of activation . This strongly suggests that only the positioning of the substrate, transition states, and covalent intermediate are altered by Na+ and K+ . Further evidence that positioning is important was that substitution of Asp-201 with a Glu caused the Km and Ki values to increase significantly . In addition, the Kd values for Na+ or K+ were 5 to 8 fold higher . The negative charge of Asp-201 was shown to be vital for Na+ and K+ binding . Large amounts of Na+ or K+ had no effect on the very large Km and Ki values of D201N-beta-galactosidase and the Vmax values changed minimally and in a linear rather than hyperbolic way . D201F-beta-galactosidase, with a very bulky hydrophobic side chain in place of Asp, essentially obliterated all binding and catalysis. Genome, 2004 Apr, 47(2), 316 - 24 Characterization of two Arabidopsis thaliana myb-like proteins showing affinity to telomeric DNA sequence; Schrumpfova P et al.; Telomere-binding proteins participate in forming a functional nucleoprotein structure at chromosome ends . Using a genomic approach, two Arabidopsis thaliana genes coding for candidate Myb-like telomere binding proteins were cloned and expressed in E . coli . Both proteins, termed AtTBP2 (accession Nos . T46051 (protein database) and GI:638639 (nucleotide database); 295 amino acids, 32 kDa, pI 9.53) and AtTBP3 (BAB08466, GI:9757879; 299 amino acids, 33 kDa, pI 9.88), contain a single Myb-like DNA-binding domain at the N-terminus, and a histone H1/H5-like DNA-binding domain in the middle of the protein sequence . Both proteins are expressed in various A . thaliana tissues . Using the two-hybrid system interaction between the proteins AtTBP2 and AtTBP3 and self interactions of each of the proteins were detected . Gel-retardation assays revealed that each of the two proteins is able to bind the G-rich strand and double-stranded DNA of plant telomeric sequence with an affinity proportional to a number of telomeric repeats . Substrates bearing a non-telomeric DNA sequence positioned between two telomeric repeats were bound with an efficiency depending on the length of interrupting sequence . The ability to bind variant telomere sequences decreased with sequence divergence from the A . thaliana telomeric DNA . None of the proteins alone or their mixture affects telomerase activity in vitro . Correspondingly, no interaction was observed between any of two proteins and the Arabidopsis telomerase reverse transcriptase catalytic subunit TERT (accession No . AF172097) using two-hybrid assay. Nucleic Acids Res, 2004 Apr 01, 32(6), 1982 - 92 Print 2004. Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy; Kim J et al.; A small container of several to a few hundred microm3 (i.e . bacterial cells and eukaryotic nuclei) contains extremely long genomic DNA (i.e . mm and m long, respectively) in a highly organized fashion . To understand how such genomic architecture could be achieved, Escherichia coli nucleoids were subjected to structural analyses under atomic force microscopy, and found to change their structure dynamically during cell growth, i.e . the nucleoid structure in the stationary phase was more tightly compacted than in the log phase . However, in both log and stationary phases, a fundamental fibrous structure with a diameter of approximately 80 nm was found . In addition to this '80 nm fiber', a thinner '40 nm fiber' and a higher order 'loop' structure were identified in the log phase nucleoid . In the later growth phases, the nucleoid turned into a 'coral reef structure' that also possessed the 80 nm fiber units, and, finally, into a 'tightly compacted nucleoid' that was stable in a mild lysis buffer . Mutant analysis demonstrated that these tight compactions of the nucleoid required a protein, Dps . From these results and previously available information, we propose a structural model of the E.coli nucleoid. J Biol Chem, 2004 Jun 18, 279(25), 26571 - 80 Epub 2004 Apr 01. Probing the role of crystallographically defined/predicted hinge-bending regions in the substrate-induced global conformational transition and catalytic activation of human phenylalanine hydroxylase by single-site mutagenesis; Stokka AJ et al.; Phenylalanine hydroxylase (PAH) is generally considered to undergo a large and reversible conformational transition upon l-Phe binding, which is closely linked to the substrate-induced catalytic activation of this hysteretic enzyme . Recently, several crystallographically solvent-exposed hinge-bending regions including residues 31-34, 111-117, 218-226, and 425-429 have been defined/predicted to be involved in the intra-protomer propagation of the substrate-triggered molecular motions generated at the active site . On this basis, single-site mutagenesis of key residues in these regions of the human PAH tetramer was performed in the present study, and their functional impact was measured by steady-state kinetics and the global conformational transition as assessed by surface plasmon resonance and intrinsic tryptophan fluorescence spectroscopy . A strong correlation (r(2) = 0.93-0.96) was observed between the l-Phe-induced global conformational transition and V(max) values for wild-type human PAH and the mutant forms K113P, N223D, N426D, and N32D, in contrast to the substitution T427P, which resulted in a tetrameric form with no kinetic cooperativity . Furthermore, the flexible intra-domain linker region (residues 31-34) seems to be involved in a more local conformational change, and the biochemical/biophysical properties of the G33A/G33V mutant forms support a key function of this residue in the positioning of the autoregulatory sequence (residues 1-30) and thus in the regulation of the solvent and substrate access to the active site . The mutant forms revealed a variably reduced global conformational stability compared with wild-type human PAH, as measured by thermal denaturation and limited proteolysis. J Bacteriol, 2004 Apr, 186(8), 2504 - 7 Interplay between plasmid partition and postsegregational killing systems; Brendler T et al.; Active partition systems and postsegregational killing (PSK) systems are present together in naturally occurring low-copy-number plasmids . Theory suggests that PSK may act as the ultimate determinant of plasmid retention, whereas the partition system may minimize the growth penalty to the host, resulting in a near-ideal symbiosis when the systems combine . Here, we prove the validity of this principle for a specific case involving the P1par system and the mvp PSK system. J Bacteriol, 2004 Apr, 186(8), 2492 - 4 The core Escherichia coli signal recognition particle receptor contains only the N and G domains of FtsY; Eitan A et al.; Previous studies have proposed that the N-terminal A domain (approximately 200 amino acid residues) of the Escherichia coli signal recognition particle (SRP) receptor, FtsY, is required for membrane targeting . In contrast to this suggestion, we show that A domain-truncated versions of FtsY, harboring only domains N and G, are functional . Therefore, we propose that N and G domains constitute the core SRP receptor. J Bacteriol, 2004 Apr, 186(8), 2466 - 75 Unraveling the function of the Rhodospirillum rubrum activator of polyhydroxybutyrate (PHB) degradation: the activator is a PHB-granule-bound protein (phasin); Handrick R et al.; Efficient hydrolysis of native poly(3-hydroxybutyrate) (nPHB) granules in vitro by soluble PHB depolymerase of Rhodospirillum rubrum requires pretreatment of nPHB with an activator compound present in R . rubrum cells (J . M . Merrick and M . Doudoroff, J . Bacteriol . 88:60-71, 1964) . Edman sequencing of the purified activator (17.4 kDa; matrix-assisted laser desorption ionization-time of flight mass spectrometry) revealed identity to a hypothetical protein deduced from a partially sequenced R . rubrum genome . The complete activator gene, apdA (activator of polymer degradation), was cloned from genomic DNA, expressed as a six-His-tagged protein in recombinant Escherichia coli (M(r), 18.3 x 10(3)), and purified . The effect of ApdA on PHB metabolism was studied in vitro and in vivo . In vitro, the activity of the activator could be replaced by trypsin, but recombinant ApdA itself had no protease activity . Comparative sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis of the protein patterns of trypsin- and ApdA-treated nPHB granules isolated from different PHB-accumulating bacteria showed that trypsin activated nPHB by removing proteins of the surface layer of nPHB regardless of the origin of nPHB, but ApdA bound to and interacted with the surface layer of nPHB in a nonproteolytic manner, thereby transforming nPHB into an activated form that was accessible to the depolymerase . In vivo, expression of ApdA in E . coli harboring the PHB biosynthetic genes, phaCBA, resulted in significant increases in the number and surface/volume ratio of accumulated PHB granules, which was comparable to the effect of phasin proteins, such as PhaP in Ralstonia eutropha . The amino acid sequence of ApdA was 55% identical to the amino acid sequence of Mms16, a magnetosome-associated protein in magnetotactic Magnetospirillum species . Mms16 was previously reported to be a GTPase with an essential function in magnetosome formation (Y . Okamura, H . Takeyama, and T . Matsunaga, J . Biol . Chem . 276:48183-48188, 2001) . However, no GTPase activity of ApdA could be demonstrated . We obtained evidence that Mms16 of Magnetospirillum gryphiswaldense can functionally replace ApdA in R . rubrum . Fusions of apdA and mms16 to gfp or yfp were functionally expressed, and both fusions colocalized with PHB granules after conjugative transfer to R . rubrum . In conclusion, ApdA in vivo is a PHB-bound, phasin-like protein in R . rubrum . The function of Mms16 in magnetotactic bacteria requires further clarification. J Bacteriol, 2004 Apr, 186(8), 2418 - 29 ZipA is required for targeting of DMinC/DicB, but not DMinC/MinD, complexes to septal ring assemblies in Escherichia coli; Johnson JE et al.; The MinC division inhibitor is required for accurate placement of the septal ring at the middle of the Escherichia coli cell . The N-terminal domain of MinC ((Z)MinC) interferes with FtsZ assembly, while the C-terminal domain ((D)MinC) mediates both dimerization and complex formation with either MinD or DicB . Binding to either of these activators greatly enhances the division-inhibitory activity of MinC in the cell . The MinD ATPase plays a crucial role in the rapid pole-to-pole oscillation of MinC that is proposed to force FtsZ ring formation to midcell . DicB is encoded by one of the cryptic prophages on the E . coli chromosome (Qin) and is normally not synthesized . Binding of MinD or DicB to (D)MinC produces complexes that have high affinities for one or more septal ring-associated targets . Here we show that the FtsZ-binding protein ZipA is required for both recruitment of the (D)MinC/DicB complex to FtsZ rings and the DicB-inducible division block normally seen in MinC(+) cells . In contrast, none of the known FtsZ-associated factors, including ZipA, FtsA, and ZapA, appear to be specifically required for targeting of the (D)MinC/MinD complex to rings, implying that the two MinC/activator complexes must recognize distinct features of FtsZ assemblies . MinD-dependent targeting of MinC may occur in two steps of increasing topological specificity: (i) recruitment of MinC from the cytoplasm to the membrane, and (ii) specific targeting of the MinC/MinD complex to nascent septal ring assemblies on the membrane . Using membrane-tethered derivatives of MinC, we obtained evidence that both of these steps contribute to the efficiency of MinC/MinD-mediated division inhibition. J Bacteriol, 2004 Apr, 186(8), 2385 - 92 Identification of a phosphotransferase system of Escherichia coli required for growth on N-acetylmuramic acid; Dahl U et al.; We report here that wild-type Escherichia coli grows on N-acetylmuramic acid (MurNAc) as the sole source of carbon and energy . Analysis of mutants defective in N-acetylglucosamine (GlcNAc) catabolism revealed that the catabolic pathway for MurNAc merges into the GlcNAc pathway on the level of GlcNAc 6-phosphate . Furthermore, analysis of mutants defective in components of the phosphotransferase system (PTS) revealed that a PTS is essential for growth on MurNAc . However, neither the glucose-, mannose/glucosamine-, nor GlcNAc-specific PTS (PtsG, ManXYZ, and NagE, respectively) was found to be necessary . Instead, we identified a gene at 55 min on the E . coli chromosome that is responsible for MurNAc uptake and growth . It encodes a single polypeptide consisting of the EIIB and C domains of a so-far-uncharacterized PTS that was named murP . MurP lacks an EIIA domain and was found to require the activity of the crr-encoded enzyme IIA-glucose (EIIA(Glc)), a component of the major glucose transport system for growth on MurNAc . murP deletion mutants were unable to grow on MurNAc as the sole source of carbon; however, growth was rescued by providing murP in trans expressed from an isopropylthiogalactopyranoside-inducible plasmid . A functional His(6) fusion of MurP was constructed, isolated from membranes, and identified as a polypeptide with an apparent molecular mass of 37 kDa by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blot analysis . Close homologs of MurP were identified in the genome of several bacteria, and we believe that these organisms might also be able to utilize MurNAc. J Bacteriol, 2004 Apr, 186(8), 2303 - 8 The Tp38 (TpMglB-2) lipoprotein binds glucose in a manner consistent with receptor function in Treponema pallidum; Deka RK et al.; A 38-kDa lipoprotein of Treponema pallidum (Tp38) was predicted to be a periplasmic sugar-binding protein based on its sequence similarity to the glucose/galactose-binding (MglB) protein of Escherichia coli (P . S . Becker, D . R . Akins, J . D . Radolf, and M . V . Norgard, Infect . Immun . 62:1381-1391, 1994) . Inasmuch as glucose is believed to be the principal, if not sole, carbon and energy source for T . pallidum and is readily available to the spirochete during its obligate infection of humans, we hypothesized that Tp38 may serve as the organism's requisite glucose receptor . For the present study, a nonacylated recombinant form of Tp38 was coexpressed with GroES and GroEL in E . coli to facilitate the isolation of soluble, properly folded Tp38 . The highly sensitive method of intrinsic fluorescence spectroscopy, predicated on the manner in which tryptophan residues reside and move within protein microenvironments, was then used to assess sugar binding to Tp38 . The intrinsic fluorescence of Tp38 was essentially unaltered when it was exposed to D-mannose, D-fucose, D-ribose, L-glucose, or L-galactose, but it changed markedly in the presence of D-glucose, and to a lesser extent, D-galactose, indicating binding . The K(d) values for D-glucose and D-galactose binding to Tp38 were 152.2 +/- 20.73 nM and 251.2 +/- 55.25 nM, respectively . Site-directed mutagenesis of Trp-145, a residue postulated to contribute to the sugar-binding pocket in a manner akin to the essential Trp-183 in E . coli MglB, abolished Tp38's conformational change in response to D-glucose . The combined data are consistent with Tp38 serving as a glucose receptor for T . pallidum . These findings potentially have important implications for syphilis pathogenesis, particularly as they may pertain to glucose-mediated chemotactic responses by T . pallidum. J Bacteriol, 2004 Apr, 186(8), 2275 - 80 Functional properties of Borrelia burgdorferi recA; Liveris D et al.; Functions of the Borrelia burgdorferi RecA protein were investigated in Escherichia coli recA null mutants . Complementation with B . burgdorferi recA increased survival of E . coli recA mutants by 3 orders of magnitude at a UV dose of 2,000 microJ/cm(2) . The viability at this UV dose was about 10% that provided by the homologous recA gene . Expression of B . burgdorferi recA resulted in survival of E . coli at levels of mitomycin C that were lethal to noncomplemented hosts . B . burgdorferi RecA was as effective as E . coli RecA in mediating homologous recombination in E . coli . Furthermore, E . coli lambda phage lysogens complemented with B . burgdorferi recA produced phage even in the absence of UV irradiation . The level of phage induction was 55-fold higher than the level in cells complemented with the homologous recA gene, suggesting that B . burgdorferi RecA may possess an enhanced coprotease activity . This study indicates that B . burgdorferi RecA mediates the same functions in E . coli as the homologous E . coli protein mediates . However, the rapid loss of viability and the absence of induction in recA expression after UV irradiation in B . burgdorferi suggest that recA is not involved in the repair of UV-induced damage in B . burgdorferi . The primary role of RecA in B . burgdorferi is likely to be a role in some aspect of recombination. Res Microbiol, 2004 Apr, 155(3), 211 - 5 The multifactorial influences of RpoS, Mlc and cAMP on ptsG expression under glucose-limited and anaerobic conditions; Seeto S et al.; The ptsG gene encodes the high-affinity glucose receptor component of the PEP:glucose phosphotransferase system . PtsG is the major glucose transporter in Escherichia coli under glucose-excess conditions but its regulation under glucose limitation or anaerobiosis is poorly defined . Using a ptsG-lacZ transcriptional fusion, ptsG expression was found to peak with low (micromolar) external glucose levels in glucose-limited chemostats, so PtsG is primed to contribute to glucose scavenging under hunger response conditions . This regulatory pattern was confirmed using methyl- alpha-glucoside transport assays of PtsG-dependent transport . The regulation of ptsG by cAMP contributed to the optimal expression with micromolar glucose but ptsG was actually repressed to levels below that in glucose-excess batch cultures at very slow growth rates and submicromolar glucose concentrations . RpoS contributed to repression of ptsG in slow-growing bacteria but not under glucose-excess conditions . Also, Mlc increasingly contributed to the repression of ptsG at residual glucose concentrations too low to saturate PtsG . A similar pattern of ptsG regulation was observed in anaerobic cultures with either glucose-excess or glucose-limiting situations. Zhonghua Zhong Liu Za Zhi, 2004 Feb, 26(2), 85 - 8 {Construction of adenovirus vector expressing TIP30 and its tumor suppressive effect in vitro and in vivo}; Zhang X et al.; OBJECTIVE: To construct an adenovirus vector expressing TIP30 gene (Ad-TIP30) and investigate its tumor suppressive effect in vitro and in vivo . METHODS: Ad-Easy system was used to construct Ad-TIP30 by recombination in E . coli . The virus was packaged in 293 cells and subsequently identified valid . Human HCC (hepatocellular carcinoma) cell lines HepG(2) (p53-wt), PLC/PRL/5 (p53-mut), and osteosarcoma cell line Saos-2 (p53-null) with different p53 genotype were infected with Ad-TIP30 and control virus with Ad-GFP, respectively . The tumor suppressive effect of TIP30 in vitro was examined by trypan blue exclusion method . The expression level of p53 was determined by RT-PCR before and after Ad-TIP30 infection . The in vivo tumor suppressive effect was detected in nude mice with human HCC xenograft . RESULTS: The expression of TIP30 significantly inhibited the in vitro proliferation of tumor cells, among which HepG(2) with wild type p53 gene was most susceptible to Ad-TIP30 induced growth inhibition . The expression of p53 was significantly up-regulated in HepG(2) after Ad-TIP30 infection as determined by RT-PCR . The growth in nude mice of HCC infected with Ad-TIP30 was significantly inhibited with an inhibition rate of 62.9% . CONCLUSION: The expression of TIP30 could inhibit the proliferation of tumor cell lines through both p53-dependent and p53-independent pathways, and may be used as a potential tool for cancer therapy. Zhonghua Zhong Liu Za Zhi, 2004 Feb, 26(2), 78 - 81 {Development of toxin targeting to VEGF-KDR}; Wu J et al.; OBJECTIVE: To develop toxin targeting vascular endothelial growth factor receptor II (VEGF-II/KDR) fused with a KDR-binling peptide screened from peptide library . METHODS: By affinity to KDR molecular which expressed specifically by new born vascular endothelial cell, peptides to KDR were screened from C7 peptide library by phage display . Among them, a peptide binding to KDR with high affinity termed as P5 was selected and fused to the N-terminal of Shiga toxin subunit A (StxA) . The protein (P5-StxA) was expressed in E . coli . RESULTS: ELISA and Western blot were applied to characterize the binding interaction between the fusion protein, P5-StxA and KDR . Cytotoxicity assay showed that P5-StxA maintained similar toxicity to cell as StxA . In the model of angiogenesis, P5-StxA inhibited selectively VEGF-induced growth of preexisting vessels of the chick chorioallantoic membrane . CONCLUSION: These studies demonstrate the small peptide, P5, maybe be used as carrier of toxin targeting to KDR. Zhonghua Gan Zang Bing Za Zhi, 2004 Mar, 12(3), 148 - 50 {Construction, expression and targeting therapeutic of single-chain immunotoxin against hepatocellular carcinoma}; Zhang J et al.; OBJECTIVES: To obtain high therapeutic effect and low toxicity single-chain immunotoxin against hepatocellular carcinoma (HCC) . METHODS: Human mutant tumor necrosis factor-alpha (mTNFalpha) was linked with the 3' end of humanized single-chain Fv against HCC (hscFv25) in pGEX4T-1 vector . The anti-HCC immunotoxin was expressed in Escherichia coli and identified by western blot . The primary tumor regression trial in nude mice bearing HCC was evaluated the targeting therapeutic value of hscFv25-mTNFalpha . The tumor tissues were stained by immunohistochemical with TNFalpha antibody . RESULTS: The expression of single-chain immunotoxin hscFv25-mTNFalpha was 12% of total bacteria proteins . The tumor regression trials of hscFv25-mTNFalpha showed 5/5 effective . It had 2/5 completely remission and 3/5 partly remission . The therapeutic result of hscFv25-mTNFalpha was better than that of mTNFalpha (F=8.70, 0.05) . The HCC tissue treated by hscFv25-mTNFalpha expressed TNFalpha positive reaction . The positive granule mainly existed in HCC cytoplasm . CONCLUSION: The single-chain immunotoxin hscFv25-mTNFalpha has high therapeutic effect and low toxicity . It has potentialities for clinical application. Lett Appl Microbiol, 2004, 38(5), 355 - 9 Fate of Escherichia coli originating from livestock faeces deposited directly onto pasture; Avery SM et al.; AIMS: To determine the fate of Escherichia coli deposited onto grassland via faeces, from naturally colonized cattle, sheep or pigs . METHODS AND RESULTS: Groups of cattle, sheep and pigs were penned outdoors on grass during November, and removed after 14 days . Escherichia coli populations in the ground declined over 134 days from initial average levels of 5.34, 4.31 and 4.96 log(10) CFU g(-1) in cattle, sheep and pig pens, respectively . The maximum Escherichia coli survival time was up to 162 days (190 days taking sampling interval and deposition time into account), but numbers varied significantly amongst the 20 replicates taken each day . Escherichia coli originating from cattle and sheep had average decimal reduction times (D-values) of 38 and 36 days, respectively; E . coli originating from pigs declined significantly faster (average D-value of 26 days) . SIGNIFICANCE AND IMPACT OF THE STUDY: Escherichia coli from livestock faeces can survive on grass for at least 5-6 months, affording opportunity for pathogenic biotypes to contaminate animals, plants or water. Folia Microbiol (Praha), 2003, 48(6), 823 - 8 Enteroaggregative and cell-detaching Escherichia coli strains among Polish children with and without diarrhea; Sobieszczanska BM et al.; To determine the association of enteroaggregative (EAEC) and cell-detaching (CDEC) Escherichia coli with diarrhea of unknown origin among children from Wroclaw (Poland), E . coli strains isolated from stool specimens of children with diarrhea were examined for mannose-resistant adherence to HEp-2 cells . EAEC were isolated from 10 of 39 (26%) children examined with diarrhea and 4 of 20 (20%) age-matched controls . CDEC were present in 14 (36%) cases of diarrhea and 7 (35%) healthy subjects . Cell-detaching activity was distinctly associated with hemolysin production . Among hemolytic CDEC strains cytotoxic necrotizing factor 1 (CNF1) synthesis prevailed among isolates obtained from cases of diarrhea (57%) in comparison with isolates obtained from healthy controls (14.3%) . Although neither EAEC nor CDEC E . coli strains were associated with diarrhea of children in this setting, there were differences among EAEC and CDEC strains isolated from children with and without diarrhea. Folia Microbiol (Praha), 2003, 48(6), 737 - 44 Identification and characterization of an endolysin encoded by the Streptomyces aureofaciens phage mu 1/6; Farkasovska J et al.; An open reading frame homologous to the genes encoding several cell-wall hydrolyzing enzymes was identified on the genome of actinophage mu 1/6 . This open reading frame encoding the putative endolysin was amplified by polymerase chain reaction and cloned into the expression vector pET-21a . This gene consisted of 1182 bp encoding a 393 amino acid polypeptide with a molar mass of 42.1 kDa . The gene product was overexpressed in Escherichia coli, and then the lytic enzyme was purified by a two-step chromatographic procedure . When applied exogenously, the endolysin of phage mu 1/6 was active against all tested Streptomyces strains but did not affect other bacteria . The amino acid sequence showed a high homology with a putative amidase of the Streptomyces phase phi C31 . Downstream of the endolysin gene, an open reading frame encoding an 88 amino acid protein was identified . Structural analysis of its sequence revealed features characteristics for holin. EMBO Rep, 2004 Apr, 5(4), 399 - 404 Asymmetric activation of Xer site-specific recombination by FtsK; Massey TH et al.; Chromosome dimers, which frequently form in Escherichia coli, are resolved by the combined action of two tyrosine recombinases, XerC and XerD, acting at a specific site on the chromosome, dif, together with the cell division protein FtsK . The C-terminal domain of FtsK (FtsK(C)) is a DNA translocase implicated in helping synapsis of the dif sites and in locally promoting XerD strand exchanges after synapse formation . Here we show that FtsK(C) ATPase activity is directly involved in the local activation of Xer recombination at dif, by using an intermolecular recombination assay that prevents significant DNA translocation, and we confirm that FtsK acts before Holliday junction formation . We show that activation only occurs with a DNA segment adjacent to the XerD-binding site of dif . Only one such DNA extension is required . Taken together, our data suggest that FtsK needs to contact the XerD recombinase to switch its activity on using ATP hydrolysis. Curr Microbiol, 2004 Feb, 48(2), 145 - 52 Identification of a second flagellin gene and functional characterization of a sigma70-like promoter upstream of a Leptospira borgpetersenii flaB gene; Lin M et al.; Leptospira borgpetersenii, one of the causative agents of leptospirosis in both animals and humans, is a bacterial pathogen with characteristic motility that is mediated by the rotation of two periplasmic flagella (PF) . The flaB gene coding for a core polypeptide subunit of PF was previously characterized by sequence analysis of its open reading frame (ORF) (M . Lin, J Biochem Mol Biol Biophys 2:181-187, 1999) . The present study was undertaken to isolate and clone the uncharacterized sequence upstream of the flaB gene by using a PCR-based genome walking procedure . This has resulted in a 1470-bp genomic DNA sequence in which an 846-bp ORF coding for a 281-amino acid polypeptide (31.3 kDa) is identified 455 bp upstream from the flaB start codon . The encoded protein exhibits 72% amino acid identity to the deduced FlaB protein sequence of L . borgpetersenii and a high degree of sequence homology to the FlaB proteins of other spirochaetes . This has demonstrated for the first time that a second flaB gene homolog is present in a Leptospira species . The newly identified gene is designated flaB1, and the previously cloned flaB renamed flaB2 . Within the intergenic sequence between flaB1 and flaB2, a potential stem-loop structure (12-bp inverted repeats) was identified 25 bp downstream of the flaB1 stop codon; this could serve as a transcription terminator for the flaB1 mRNA . Three E . coli-like promoter regions (I, II, and III) for binding Esigma(70), a regulatory sequence uncommonly found in flagellar genes, were predicted upstream of the flaB2 ORF . Only promoter region II contains a promoter that is functional in E . coli, as revealed at phenotypic and transcriptional levels by its capability of directing the expression of the chloramphenicol acetyltransferase (CAT) gene in the promoter probe vector pKK232-8 . These observations may suggest that flaB1 and flaB2 are transcribed separately and do not form a transcriptional operon controlled by a single promoter. Curr Microbiol, 2004 Feb, 48(2), 108 - 12 The induction of intercellular adhesion molecule-1 on human umbilical vein endothelial cells by a heat-stable component of Porphyromonas gingivalis; Mao S et al.; Live Porphyromonas gingivalis enhanced the expression of intercellular adhesion molecule-1 (ICAM-1) on the surface of human umbilical vein endothelial cells (HUVECs) in a bacterial dose-dependent manner . Inactivation of P . gingivalis by ultraviolet (UV), heat (56 degrees C, 30 min), or sonication did not alter its stimulatory activity . ICAM-1 expression began to increase at 4 h after stimulation, reached a maximum at 12 h, and remained at the maximum for at least the next 8 h . This time course was similar to that of expression by Escherichia coli LPS . Furthermore, the effect of UV-inactivated P . gingivalis was not inhibited by boiling or polymyxin B treatment . In addition, the effect of P . gingivalis strain W83 on ICAM-1 expression was stronger than that of strain ATCC 33277 . Our results suggested that some unidentified, heat-stable proteins, polysaccharides, or lipids may be the stimulatory factor(s), although the participation of LPS could not be completely ruled out . The ability of P . gingivalis to stimulate ICAM-1 expression on endothelial cells may play an important role in the pathogenesis of periodontal disease. Curr Microbiol, 2004 Feb, 48(2), 97 - 101 Effect of 3' terminal codon pairs with different frequency of occurrence on the expression of cat gene in Escherichia coli; Boycheva SS et al.; In a previous study, we have identified four types of 3' terminal codon pairs depending on their frequency of occurrence in the Escherichia coli genome: overrepresented, moderately represented, underrepresented, and missing . In this study, the influence of eight codon pairs belonging to these four groups on the efficiency of chloramphenicol acetyltransferase ( cat) gene expression in E . coli is examined . Our results show that the missing codon pairs CCU:UAG (Pro:Stop) and CCC:UAG (Pro:Stop) had decreasing effect, whereas another missing pair CCU:AGG (Pro:Arg) had an opposite effect on the yield of CAT protein in comparison with the wild-type cat gene. Curr Microbiol, 2004 Feb, 48(2), 88 - 96 Mercury volatilization by R factor systems in Escherichia coli isolated from aquatic environments of India; Gupta N et al.; Ten Escherichia coli strains isolated from five different aquatic environments representing three distinct geographical regions of India showed significantly high levels of tolerance to the inorganic form of mercury, i.e., mercuric chloride (HgCl(2)) . MRD14 isolated from the Dal Lake (Kashmir) could tolerate the highest concentration of HgCl(2), i.e., 55 microg/mL, and MRF1 from the flood water of the Yamuna River (Delhi) tolerated the lowest concentration, i.e., 25 microg/mL . All ten strains revealed the presence of a plasmid of approximately 24 kb, and transformation of the isolated plasmids into the mercury-sensitive competent cells of E . coli DH5alpha rendered the transformants resistant to the same concentration of mercury as the wild-type strains . Mating experiments were performed to assess the self-transmissible nature of these promiscuous plasmids . The transfer of mercury resistance from these wild-type strains to the mercury-sensitive, naladixic acid-resistant E . coli K12 (F(-) lac(+)) strain used as a recipient was observed in six of the nine strains tested . Transconjugants revealed the presence of a plasmid of approximately 24 kb . An evaluation of the mechanism of mercury resistance in the three most efficient strains (MRG12, MRD11, and MRD14) encountered in our study was determined by cold vapor atomic absorption spectroscopy (CV-AAS), and it was noted that resistance to HgCl(2) was conferred by conversion of the toxic ionic form of mercury (Hg(++)) to the nontoxic elemental form (Hg(0)) in all three strains . MRD14 volatilized mercury most efficiently. EMBO J, 2004 Apr 21, 23(8), 1868 - 77 Epub 2004 Apr 01. Methionine sulfoxide reductases protect Ffh from oxidative damages in Escherichia coli; Ezraty B et al.; In proteins, methionine residues are primary targets for oxidation . Methionine oxidation is reversed by methionine sulfoxide reductases A and B, a class of highly conserved enzymes . Ffh protein, a component of the ubiquitous signal recognition particle, contains a methionine-rich domain, interacting with a small 4.5S RNA . In vitro analyses reported here show that: (i) oxidized Ffh is unable to bind 4.5S RNA, (ii) oxidized Ffh contains methionine sulfoxide residues, (iii) oxidized Ffh is a substrate for MsrA and MsrB enzymes; and (iv) MsrA/B repairing activities allow oxidized Ffh to recover 4.5S RNA-binding abilities . In vivo analyses reveal that: (i) Ffh synthesized in the msrA msrB mutant contains methionine sulfoxide residues and is unstable, (ii) msrA msrB mutant requires high levels of Ffh synthesis for growth and (iii) msrA msrB mutation leads to defects in Ffh-dependent targeting of MalF . We conclude that MsrA and MsrB are required to repair Ffh oxidized by reactive oxygen species produced by aerobic metabolism, establishing an as-yet undescribed link between protein targeting and oxidation. EMBO J, 2004 Apr 21, 23(8), 1709 - 19 Epub 2004 Apr 01. Structural basis and kinetics of inter- and intramolecular disulfide exchange in the redox catalyst DsbD; Rozhkova A et al.; DsbD from Escherichia coli catalyzes the transport of electrons from cytoplasmic thioredoxin to the periplasmic disulfide isomerase DsbC . DsbD contains two periplasmically oriented domains at the N- and C-terminus (nDsbD and cDsbD) that are connected by a central transmembrane (TM) domain . Each domain contains a pair of cysteines that are essential for catalysis . Here, we show that Cys109 and Cys461 form a transient interdomain disulfide bond between nDsbD and cDsbD in the reaction cycle of DsbD . We solved the crystal structure of this catalytic intermediate at 2.85 A resolution, which revealed large relative domain movements in DsbD as a consequence of a strong overlap between the surface areas of nDsbD that interact with DsbC and cDsbD . In addition, we have measured the kinetics of all functional and nonfunctional disulfide exchange reactions between redox-active, periplasmic proteins and protein domains from the oxidative DsbA/B and the reductive DsbC/D pathway . We show that both pathways are separated by large kinetic barriers for nonfunctional disulfide exchange between components from different pathways. Biosci Biotechnol Biochem, 2004 Mar, 68(3), 728 - 38 Site-directed mutagenesis experiments on the putative deprotonation site of squalene-hopene cyclase from Alicyclobacillus acidocaldarius; Sato T et al.; To provide insight into the catalytic mechanism for the final deprotonation reaction of squalene-hopene cyclase (SHC) from Alicyclobacillus acidocaldarius, mutagenesis experiments were conducted for the following ten residues: Thr41, Glu45, Glu93, Arg127, Trp133, Gln262, Pro263, Tyr267, Phe434 and Phe437 . An X-ray analysis of SHC has revealed that two types of water molecules ("front water" and "back waters") were involved around the deprotonation site . The results of these mutagenesis experiments allow us to propose the functions of these residues . The two residues of Gln262 and Pro263 probably work to keep away the isopropyl group of the hopanyl cation intermediate from the "front water molecule," that is, to place the "front water" in a favorable position, leading to the minimal production of by-products, i.e., hopanol and hop-21(22)-ene . The five residues of Thr41, Glu45, Glu93, Arg127 and Trp133, by which the hydrogen-bonded network incorporating the "back waters" is constructed, increase the polarization of the "front water" to facilitate proton elimination from the isopropyl moiety of the hopanyl cation, leading to the normal product, hop-22(29)-ene . The three aromatic residues of Tyr267, Phe434 and Phe437 are likely to play an important role in guiding squalene from the enzyme surface to the reaction cavity (substrate channeling) by the strong affinity of their aromatic residues to the squalene substrate. Biosci Biotechnol Biochem, 2004 Mar, 68(3), 631 - 7 Gibberellin induces alpha-amylase gene in seed coat of Ipomoea nil immature seeds; Nakajima M et al.; Two full-length cDNAs encoding gibberellin 3-oxidases, InGA3ox1 and InGA3ox2, were cloned from developing seeds of morning glory (Ipomoea nil (Pharbitis nil) Choisy cv . Violet) with degenerate-PCR and RACEs . The RNA-blot analysis for these clones revealed that the InGA3ox2 gene was organ-specifically expressed in the developing seeds at 6-18 days after anthesis . In situ hybridization showed the signals of InGA3ox2 mRNA in the seed coat, suggesting that active gibberellins (GAs) were synthesized in the tissue, although no active GA was detected there by immunohistochemistry . In situ hybridization analysis for InAmy1 (former PnAmy1) mRNA showed that InAmy1 was also synthesized in the seed coat . Both InGA3ox2 and InAmy1 genes were expressed spatially overlapped without a clear time lag, suggesting that both active GAs and InAmy1 were synthesized almost simultaneously in seed coat and secreted to the integument . These observations support the idea that GAs play an important role in seed development by inducing alpha-amylase. Genetic engineering: Genetic engineering means manipulation of this master program. Genes, mostly from other, often totally unrelated species are inserted in the genetic "master program". Genes from e.g. fish, scorpions, bacteria and viruses have been inserted into food plants in genetic engineering projects. The method of genetic engineering is so crude that it is impossible to decide beforehand where the inserted genes will stick in the master program. The effect of a gene is greatly dependent on the properties of its neighboring genes. This is one of several reasons why the outcome of artifical gene insertion (genetic engineering) are unpredictable. It is an established scientific fact that such manipulation may in the worst case lead to the creation of harmful substances as well as other unexpected disturbances. The knowledge about genes is very incomplete In addition, the knowledge about the master program is very incomplete. Actually only 2-3 percent of it are so called genes. Their function is fairly well known. The function and purpose of the remaining 97-98 percent is very little known. From genetics it is well known that even changing just a little code word in the master program can mean the difference between health and a deadly hereditary disease. So the genes are very powerful. It is probably not a coincidence that an unproportionately large part of our members are computer experts. They know that the addition of just one "code syllable" (binary code) may be disastrous to a computer program. Haphazard insertion of genes, as done in genetic engineering, does not add just one syllable, but many thousand of code syllables. In addition, it is obvious to a computer scientist that it is absolutely vital to completely master the program in order to be able to make a useful change in a reliable way. For some obscure reason, this is regrettably not obvious to biotechnology researchers. They are manipulating genes although they are very far from mastering the genetic "program". Much too little is know to justify commercial use We find it irresponsible to use genetic engineering for commercial purposes at this stage of very incomplete knowledge about the effects. Especially so as harmful substances may be generated. Also, very little is known what artificially manipulated genes released into nature may do to the environment. Conclusion It is an undeniable fact that science knows much too little about the effects of genetic engineering to be able to predict and master the consequences. Therefore genetic engineering has to be confined to contained laboratories until science knows what it is doing. By using it for foods at this stage means an inevitable risk for unexpected and potentially harmful effects on human health as well as for the environment. Although a there has been a tremendous revolution in the biological sciences in the past twenty years, there is still a great deal that remains to be discovered. The completion of the sequencing of the human genome, as well as the genomes of most agriculturally and scientifically important plants and animals, have increased the possibilities of genetic research immeasurably. Expedient and inexpensive access to comprehensive genetic data has become a reality, with billions of sequenced nucleotides already online and annotated. Now that the rapid sequencing of arbitrarily large genomes has become a simple, if not trivial affair, a much greater challenge will be elucidating function of the extraordinarily complex web of interacting proteins, dubbed the proteome, that constitutes and powers all living things. Genetic engineering has become the gold standard in protein research, and major research process has been made using a wide variety of techniques, including loss of function, such as in a knockout experiment, in which an organism is engineered to lack one or more genes. This allows the experimenter to analyze the defects caused by this mutation, and can be considerably useful in unearthing the function of a gene. It is used especially frequently in developmental biology. A knockout experiment involves the creation and manipulation of a DNA construct in vitro, which, in a simple knockout, consists of a copy of the desired gene which has been slightly altered such as to cripple its function. The construct is then taken up by embryonic stem cells, where the engineered copy of the gene replaces the organism's own gene. These stem cells are injected into blastocysts, which are implanted into surrogate mothers. Another method, useful in organisms such as drosophila, is to induce mutations in a large population and then screen the progeny for the desired mutation. A similar process can be used in both plants and prokaryotes. gain of function experiments, the logical counterpart of knockouts. These are sometimes performed in conjunction with knockout experiments to more finely establish the function of the desired gene. The process is much the same as that in knockout engineering, except that the construct is designed to increase the function of the gene, usually by providing extra copies of the gene or attracting more frequent transcription. 'tracking' experiments, which seek to gain information about the localization and interaction of the desired protein. One way to do this is to replace the wild-type gene with a 'fusion' gene, which is a juxtaposition of the wild-type gene with a reporting element such as green fluorescent protein that will allow easy visualization of the products of the genetic modification. While this is a useful technique, the manipulation can destroy the function of the gene, creating secondary effects and possibly calling into question the results of the experiment. More sophisticated techniques are now in development that can track protein products without mitigating their function, such as the addition of small sequences which will serve as binding motifs to monoclonal antibodies. Proponents of genetic engineering argue that the technology is safe, and that it is necessary in order to maintain food production that will continue to match population growth. However, others argue that food distribution, not production, is the biggest problem, citing that the population growth is actually a result of uneven distribution of food (and wealth). Others oppose genetic engineering on the grounds that genetic modifications may have unforeseen consequences, both in the initially modified organisms, and their environments. For example, certain strains of maize have been developed that are toxic to plant eating insects (see bt corn). However, when those strains cross-polinated with other varieties of wild and domestic maize, the relevant genes were passed on. This introduced a new gene into the gene pool of the maize population outside of the crop field. The ecological and environmental effects of transgenic plants are constantly being investigated. Anti-genetic-engineering activists say that with current recombinant technology there is no way to ensure that genetically modified organisms will remain under control, and the use of this technology outside of secure laboratory environments carries unacceptable risks for the future. Some fear that certain types of genetically engineered crops will further reduce biodiversity in the cropland; herbicide-tolerant crops will for example be treated with the relevant herbicide to the extent that there are no wild plants ('weeds') able to survive, and plants toxic to insects will mean insect-free crops. This could result in declines in other wildlife (e.g. birds) which depend on weed seeds and/or insects for food resources. The recent (2003) farm scale studies in the UK found this to be the case with GM sugar beet and GM rapeseed, but not with GM maize (though in the last instance, the non-GM comparison maize crop had also been treated with environmentally damaging pesticides subsequently (2004) withdrawn from use in the EU). Proponents of current genetic techniques as applied to food plants cite the benefits that the technology can have, for example, in the harsh agricultural conditions of third world countries. They say that with modifications, existing crops would be able to thrive under the relatively hostile conditions providing much needed food to their people. Proponents also like to cite golden rice, a genetically engineered rice variety (still under development) that contains elevated vitamin A levels. There is hope that this rice may alleviate vitamin A deficiency that contributes to the death of millions annually. Proponents say that genetically engineered crops are not significantly different from those modified by nature or humans in the past, and by extension are as safe or even safer than such methods. There is gene transfer between unicellular eukaryotes and prokaryotes. There have been no known genetic catastrophes as a result of this. Economic and political effects Many opponents of current genetic engineering believe the increasing use of GM in major crops has caused a power shift in agriculture towards Biotechnology companies gaining excessive control over the production chain of crops and food, and over the farmers that use their products, as well. Many proponents of current genetic engineering techniques believe it has brought higher yields and profitability to many farmers, including those in third world countries. In April 2004 Hugo Chávez announced a total ban on genetically modified seeds in Venezuela. Cloning is the process of creating an identical copy of an original. A clone in the biological sense, therefore, is a multi-cellular organism that is genetically identical to another living organism. Sometimes this can refer to "natural" clones made either when an organism reproduces asexually or when two genetically identical individuals are produced by accident (as with identical twins), but in common parlance the clone is an identical copy by some conscious design. Also see clone (genetics). The term clone is derived from κλων, the Greek word for "twig". In horticulture, the spelling clon was used until the twentieth century; the final e came into use to indicate the vowel is a "long o" instead of a "short o". Since the term entered the popular lexicon in a more general context, the spelling clone has been used exclusively. In biology, cloning is used in two contexts: cloning a gene, or cloning an organism. Cloning a gene means to extract a gene from one organism (for example by PCR) and insert it into a second organism (usually via a vector), where it can be used and studied. Cloning a gene sometimes can refer to success in identifying a gene associated with some phenotype. For example, when biologists say that the gene for disease X has been cloned, they mean that the gene's location and DNA sequence has been identified, although the ability to specifically copy the physical DNA is a side-effect of its identification. Cloning an organism means to create a new organism with the same genetic information as an existing one. In a modern context, this can involve somatic cell nuclear transfer in which the nucleus is removed from an egg cell and replaced with a nucleus extracted from a cell of the organism to be cloned (currently, both the egg cell and its transplanted nucleus must be from the same species). As the nucleus contains (almost) all of the genetic information of a lifeform, the "host" egg cell will develop into an organism genetically identical to the nucleus "donor". Mitochondrial DNA, which is not transferred by this process, is generally ignored as its effects on organisms are thought to be relatively minor. The term clone is used in horticulture to mean all descendants of a single plant, produced by vegetative reproduction. Many horticultural varieties of plants are clones, having been derived from a single individual, multiplied by some process other than sexual reproduction. As an example, some European varieties of grapes represent clones that have been propagated for over two millennia. This is a genuine example of cloning in the broader biological sense, as it creates genetically identical organisms by biological means, but this particular kind of cloning has not come under ethical scrutiny and is generally treated as an entirely different kind of operation. Therapeutic cloning is the procedure for creating stem cells genetically compatible with the patient. However, the success rate has been very low: Dolly was born after 276 failed attempts; 70 calves have been created from 9,000 attempts and one third of them died young; Prometea took 328 attempts. With certain species such as dogs no successful clones have been created at all. A surprising development to do with aging resulted from finds that Dolly was apparently born old; she developed arthritis at age six. Aging of this type is thought to be due to telomeres, regions at the tips of chromosomes which prevent genetic threads fraying every time a cell divides. Over time telomeres get worn down until cell-division is no longer possible - this is thought to be a cause of aging. However, when researchers cloned cows they appeared to be younger than they should be. Analysis of the cow's telomeres showed they had not only been 'reset' to birth-length, but they were actually longer - suggesting these clones would live longer life spans than normal cows (but many have died young after excessive growth). Researchers think that this could eventually be developed to reverse aging in humans. Human cloning is a subject of great controversy regarding its ethical and practical consequences. Many people believe that attempts to perform human reproductive cloning would be unethical, but some scientists have publicly announced their intention to do so. A number of groups have made claims that they are working on or have already produced human clones. None of these claims has been independently confirmed. Meanwhile therapeutic cloning appears to be a promising technology for combating many deadly deseases. For more on these issues, see the article human cloning. Cloning extinct species has been a dream of scientists for decades. This pursuit was publicized in Jurassic Park, but has come closer to being a reality in recent years (in fact, the dinosaurs in Jurassic Park were not really cloned -- their genomes were reconstructed from bits and pieces of many dinosaur genomes). One of the most anticipated targets for cloning was once the Woolly mammoth, but attempts to extract DNA from frozen mammoths have been unsuccessful. In 2000, a cow named Bessie gave birth to a cloned Asian guar, an endangered species; this provided hope that similar techniques (using surrogate mothers of another species) might be used to clone extinct species; in anticipation of this possibility, the last bucardo, a Spanish mountain goat, was frozen immediately after it died (from illness after birth). Researchers are also considering cloning endangered species such as the giant panda, ocelot, and cheetah. In 2002, geneticists at the Australian Museum announced that they had replicated DNA of the Thylacine (Tasmanian Tiger), extinct about 65 years previous, using polymerase chain reaction (PCR). One of the continuing obstacles in the attempt to clone extinct species is the need for nearly perfect DNA. Furthermore, if animals were cloned from one individual, the significant problem of lack of genetic diversity would still remain in the attempt to establish a breeding population While the promise cloning extinct species is an old justification for developing cloning, there are a lot of other applications. One is cloning cattle, horses and other domestic animals. This appears to be a much faster and more efficient way to propagate good genes (as chosen by humans) than traditional breeding. Another application that has recently became feasible is cloning pets. Little Nicky was the first pet cloned (by the Genetic Savings and Clone company) after the death of the original. The procedure is still very expensive and the demand is in its infancy, though. But there is potential demand in many unexpected areas. An expression vector is a relatively small DNA molecule that can be used to carry a specific gene into a target cell. Once the expression vector is inside the cell, the protein that is coded for by the gene is produced by the normal transcription and translation processes of the host cell. Expression vectors are used for molecular biology techniques such as site-directed mutagenesis. In general, DNA vectors that are used in many molecular biology gene cloning experiments need not result in the expression of a protein. Expression vectors are often specifically designed to contain non-protein-coding sequences that act as enhancer and promoter regions and allow efficient transcription of the gene that is carried on the expression vector. Expression vectors are basic tools for biotechnology and the production of proteins such as insulin that are important for medical treatments of specific diseases like diabetes. Gene expression is the multi-step process by which a gene's information is converted into the structures and functions of a cell, following the central dogma of molecular biology. Gene therapy is the insertion of genes into an individual's cells and tissues to treat a disease, and hereditary diseases in particular. Gene therapy typically aims to supplement a defective mutant allele with a functional one. Although the technology is still in its infancy, it has been used with some success. Antisense therapy is not strictly a form of gene therapy, but is often lumped together with them. In the 1980s, advances in molecular biology had already enabled human genes to be sequenced and cloned. Scientists looking for a method of easily producing proteins, such as the protein deficient in diabetics — insulin, investigated introducing human genes to bacterial DNA. The modified bacteria then produce the corresponding protein, which can be harvested and injected in people who cannot produce it naturally. Scientists took the logical step of trying to introduce genes straight into human cells, focusing on diseases caused by single-gene defects, such as cystic fibrosis, hemophilia, muscular dystrophy and sickle cell anemia. However, this has been much harder than modifying simple bacteria, primarily because of the problems involved in carrying large sections of DNA and delivering it to the right site on the genome. In theory it is possible to transform either somatic cells (most cells of the body) or cells of the germline (such as stem cells, sperm and eggs). All gene therapy so far in people has been directed at somatic cells, whereas germline engineering in humans remains only a highly controversial prospect. For the introduced gene to be transmitted normally to offspring, it needs not only to inserted into the cell, but also to be incorporated into the chromosomes by recombination. Somatic gene therapy can be broadly split in to two categories: ex vivo (where cells are modified outside the body and then transplanted back in again) and in vivo (where genes are changed in cells still in the body.) Recombination-based approaches in vivo are especially uncommon, because for most DNA constructs recombination is a very low probability event. The ex vivo approach was the first to be put in to practice. In 1990 trials were run designed to treat children with an inherited immune defficiency, as well as children or adults with high serum cholesterol. Cells were removed from the patients body and incubated with vectors that inserted copies of the genes. Most gene-therapy vectors are viruses, although there are techniques for delivering DNA directly as well. After modification, the cells are transplanted back in to the patient where they will hopefully replicate and produce functional descendants for the life of the transplanted individual. This technique is best used for diseases where the desired cells can be extracted easily, such as the blood or liver. For in vivo techniques the challenge of inserting the genes is even greater. The vector carriers have a difficult task to complete: they must deliver the genes to enough cells for results to be achieved and they have to remain undetected by the body's immune system. Much hope has been placed in viruses to deliver the DNA. After all, this is what viruses do naturally — insert their genes into cells so that their hosts can reproduce them. Through millions of years of evolution viruses have developed very sophisticated ways of doing this. There are two classes of viruses which look promising — retroviruses and adenoviruses. Genetic engineering, genetic modification (GM), and gene splicing (once in widespread use but now deprecated) are terms for the process of manipulating genes in an organism, usually outside of the organism's normal reproductive process. It often involves the isolation, manipulation and reintroduction of DNA into model organisms, usually to express a protein. The aim is introduce new genetic characteristics to an organism to increase its usefulness such as, increasing the yield of a crop species, introducing a novel characteristic, or producing a new protein or enzyme. c, g. Examples are the production of human insulin through the use of modified bacteria and the production of new types of mice like the OncoMouse, (cancer mouse) for research, through genetic redesign. Retroviruses are small RNA based viruses. Because they reproduce by integrating their RNA into the host's DNA, they carry the prospect of incorporating new genes into chromosomes, so that cells that divide will pass the genes to their progeny. Scientists have removed certain crucial genes from the viral genome, so that they cannot damage the host. RPR Gencell (a French pharmaceutical company) conducted experiments injecting retroviruses into lung cancer patients. After the injections of vectors containing p53 — a gene that suppresses tumours — directly in to the cancerous tissue, the tumours stopped growing and were broken down by the body. Adenoviruses are larger, DNA-based viruses, which can carry more genes. A problem affecting all virus-based vectors is recognition by the immune system. When familiar viruses are detected in the bloodstream the body sends antibodies to bind to and consume them. In retroviral and other recombination-based approaches, a second problem arises in the unpredictablity of where the new DNA inserts into the chromsomes of transfected cells. If the gene is inserted in a bad place — for example within the sequence of an important gene, or within non-coding (intron) regions that the cell will never use to produce proteins (transcribe) — then the new gene would not be properly expressed and the cell could be made worse or even cancerous. Scientists are researching an interesting way of bypassing the DNA problems by actually introducing an extra chromosome into the body. Existing alongside existing DNA, this 47th chromosome would contain the genes needed. Introduced into the body as a large vector, it is not expected to be targeted by the immune system because of its construction. Viruses attack their hosts to insert their genetic material into the genetic material of the host. This genetic material contains instructions to produce these viruses. The host cell will carry out these intructions and produce the viruses. This is how viruses spread, in general. In addition to the instructions producing the components of the virus itself, viruses can carry additional genes containing instructions for creating other kinds of proteins. In theory, if we insert a gene that is missing from a patient in a virus, and infect that patient with the virus, the virus will spread the missing gene in all the cells of the patient. The missing gene is now replaced and the disease is cured. This technique is called gene therapy. Three types of viruses are currently used as vectors in gene therapy: retroviruses and adenoviruses and adeno-associated viruses. They differ in their mechanisms of action and results. The genetic material in retroviruses is in the form of RNA molecules, while the genetic material of their hosts is in the form of DNA. When a retrovirus infects a host cell, it will introduce its RNA together with some enzymes into the cell. This RNA molecule from the retrovirus must produce a DNA copy from its RNA molecule before it can be considered part of the genetic material of the host cell. The process of producing a DNA copy from an RNA molecule is termed reverse transcription. It is carried out by one of the enzymes carried in the virus, called reverse transcriptase. d, k, d. After this DNA copy is produced and is free in the nucleus of the host cell, it must be incorporated into the genome of the host cell. That is, it must be inserted into the large DNA molecules in the cell, or the chromosomes of the cell. This process is done by another enzyme carried in the virus called integrase. Now that the genetic material of the virus is incorporated and has become part of the genetic material of the host cell, we can say that the host cell is now modified to contain a new gene. When this host cell divides later, its descendants will all contain the new genes. One of the problems of gene therapy using retroviruses is that the integrase enzyme can insert the genetic material of the virus in any arbitrary position in the genome of the host. If genetic material happens to be inserted in the middle of one of the original genes of the host cell, this gene will be disrupted. If the gene happens to be one regulating cell division, uncontrolled cell division (i.e., cancer) can occur. Gene therapy trials to treat severe combined immunodeficiency (SCID) were halted or restricted when leukemia was reported in several of the patients. Adenoviruses are viruses that carry their genetic material in the form of DNA. When these viruses infect a host cell, they introduce their DNA molecule into the host. The genetic material of the adenoviruses is not incorporated into the host cells genetic material. The DNA molecule is left free in the nucleus of the host cell, and the instructions in this extra DNA molecule are transcribed just like any other gene. The only difference is that these extra genes are not replicated when the cell is about to undergo cell division. So the descendants of that cell will not have the extra gene. This means that treatment with the adenovirus will require regular doses to add the missing gene every time new cells are produced without the gene. Adeno-associated viruses, from the parvovirus family, are small viruses with a genome of single stranded DNA. There are a few disadvantages to using AAV, mainly the small amount of DNA it can carry and the difficulty in producing it. This type of virus is being used, however, because it is non-pathogenic (most people carry this harmless virus). In contrast to adenoviruses, most people treated with AAV will not build an immune response to remove the virus and the cells that have been succesfully treated with it. Several trials with AAV are on-going or in preparation, mainly trying to treat muscle and eye diseases, the two tissues where the virus seems particularly useful For the safety of gene therapy, the Weismann barrier is fundamental in the current thinking. Soma-to-germline feedback should therefore be impossible. However there are indications that the Weissman barrier can be breached. The Weismann barrier is the principle that hereditary information moves only from genes to body cells but never in reverse. In more precise terminology hereditary information moves only from germline cells to somatic cells (or soma to germline feedback is impossible). This is often confused with the central dogma of molecular biology which in its modern form states that information travels from DNA<->RNA->protein. Since a protein is specified by a DNA segment or gene, future copies of that protein can be modified by changing the gene's underlying DNA. One way to do this is to isolate the DNA, cut it, and splice in a different DNA segment. Daniel Nathans and Hamilton Smith received the 1978 Nobel Prize in physiology or medicine for their isolation of restriction endonucleases, which are able to cut DNA at specific sites. Together with ligase, which can join together fragments of DNA, restriction enzymes formed the initial basis of recombinant DNA technology. i, l, j, g, a. Genetic modification or genetic manipulation are claimed to be neutral and possibly more technically correct terms for what is claimed, controversially, to be genetic engineering. Opponents question whether the concept of 'modification', with its implications of progress, are applicable here. The theory is very important as it has implications for human gene therapy. If the Weismann barrier is permeable then genetic treatments of somatic cells may actually result in an inheritable change to the genome, possibly resulting in the genetic engineering of the human species rather than just individuals. It also has implications in our understanding of evolution as it would imply that species aren't nearly as separable genetically as we once thought. Furthermore it opens the door to the existence of certain Lamarckian concepts that previously had no supporting mechanism. The work of 19th century biologist August Weismann was an early step in the founding of the science of genetics, and like any part of any science is subject to review in light of new data. Although the principle was seriously questioned at times in the 20th century, the attacks of Paul Kammerer and Trofim Lysenko did nothing to weaken the principle among scientists, except where science was ruled by arbitrary political power under Stalin. In the late 20th century there have been criticisms of an impermeable Weismann barrier. These criticisms are all centered around the activities of an enzyme called reverse transcriptase. Evidence has begun to mount for horizontal gene transfer. Different species appear to be swapping genes through the activities of retroviruses. Retro-viruses are able to transfer genes between species because they reproduce by integrating their code into the genome of the host and they often move nearby code in the infected cell as well. Seeing as these viruses use RNA as their genetic information they need to use reverse transcriptase to convert their code into DNA first. If the cell they infect is a germline cell then that integrated DNA can become part of the gene pool of that species. Other evidence against Weismann's barrier is found in the immune system. A controversial theory of Edward J. Steele's suggests that endogenous retroviruses carry new versions of V genes from soma cells in the immune system to the germ line cells. This theory is expounded in his book Lamarck's signature. Edward J Steele observes that the immune system needs to be able to evolve fast to evolutionary pressure (as the infective agents evolve very fast). He also observes that there are plenty of endegenous retro-viruses in our genome and it seems likely that they have some purpose. It should be noted that even if both of these possible exceptions turn out to be real the Weismann barrier just loses its absolute status. Without further examples the penetration of the Weismann barrier is still very much an exception. A genetically modified food is a food product containing some quantity of any genetically modified organism (GMO) as an ingredient. They are mainly to increase the mass of food to feed more people. Some nations have very strong disagreement over genetically modified organisms. For example, the European Union and Japan are willing to maintain labelling and traceability standards for GM food products, while the United States claims it violates free trade agreements. The first commercially grown genetically modified food crop was a tomato created by Calgene called the FlavrSavr. Calgene submitted it to the U.S. Food and Drug Administration for testing in 1992; following the FDA's determination that the FlavrSavr was, in fact, a tomato, did not constitute a health hazard, and did not need to be labeled to indicate it was genetically modified, Calgene released it into the market in 1994, where it met with little public comment. Subsequent genetically modified food crops included virus-resistant squash, a potato variant that included an organic pesticide called Bt (NB: the EPA classified the Bt potato as a pesticide, but required no labeling), strains of canola, soybean, corn and cotton engineered by Monsanto to be immune to their popular herbicide Roundup, and Bt corn. There was a brief interlude where Monsanto flirted with introducing a technology called terminator into food crops, which produced plants that grew sterile seeds. Monsanto claimed this was necessary to protect their intellectual property rights, since they were licensing the technology to farmers, and would also have provided a measure of protection against volunteer corn carrying unwanted traits, a major concern that arose during the Starlink debacle. Public outcry about the undue influence that the terminator gene would give to Monsanto, particularly in less developed nations where seed saving is more common, led to its withdrawal. Awareness grew throughout the nineties and eventually produced a strong backlash against GM foods (discussed below), which were panned as "untested", "unlabeled" and "unsafe"; following this backlash, the International Rice Research Institute, with funding from the Rockefeller Foundation developed a strain of rice enriched with vitamin A through genetic modification, dubbed golden rice. Subsequently the biotech industry touted this as a boon to poor people suffering from Vitamin A deficiency, which can cause blindness. This was condemned by GM food opponents as a ploy and a public relations move. (See golden rice for more.) Many prominent environmental organizations, like Friends of the Earth and Greenpeace, currently consider the issue of the presence of GMOs in conventional food products to be a major issue - indeed Greenpeace has made it a centerpiece of their activism. In 2002, opponents placed a measure on the Oregon ballot that would have made that state the first to require labelling of GMO food. Between 1996 and 2002, the total surface area of land cultivated with GMOs has increased by a factor of thirty. Land producing GMO crops grew from 17,000 km² (4.2 million acres) in 1996 to 520,000 km² (128 million acres) in 2001. The value for 2002 was 145 million acres (587,000 km²) and for 2003 was 167 million acres (676,000 km²). Soybean crop represented 63% of total surface in 2001, maize 19%, cotton 13% and canola 5%. Four countries represent 99% of total GM surface in 2001: United States (68%), Argentina (22%), Canada (6%) and China (3%). It is estimated that 70% of products on U.S. grocery shelves include GM products. In particular, Bt corn is widely grown, as are soybeans genetically designed to tolerate Monsanto's Roundup herbicide. The US Agriculture Department estimated that 38 percent of the 79 million acres (320,000 km²) of corn planted in 2003 will be genetically engineered varieties as well as 80% of the 73.2 million acres (296,000 km²) soybeans. Complicating the issue, the majority of GM crops grown today are fed to animals, thereby indirectly effecting human food production. Although "biotechnology" and "genetic modification" commonly are used interchangeably, GM is a special set of technologies that alter the genetic makeup of such living organisms as animals, plants, or bacteria. Biotechnology, a more general term, refers to using living organisms or their components, such as enzymes, to make products that include wine, cheese, beer, and yogurt. Combining genes from different organisms is known as recombinant DNA technology, and the resulting organism is said to be "genetically modified," "genetically engineered," or "transgenic." GM products (current or in the pipeline) include medicines and vaccines, foods and food ingredients, feeds, and fibers. Locating genes for important traits—such as those conferring insect resistance or desired nutrients—is one of the most limiting steps in the process. However, genome sequencing and discovery programs for hundreds of different organisms are generating detailed maps along with data-analyzing technologies to understand and use them. Transgenic crops are grown commercially or in field trials in over 40 countries and on 6 continents. In 2000, about 109.2 million acres (442,000 km²) were planted with transgenic crops, the principal ones being herbicide- and insecticide-resistant soybeans, corn, cotton, and canola. Other crops grown commercially or field-tested are a sweet potato resistant to a virus that could destroy most of the African harvest, rice with increased iron and vitamins that may alleviate chronic malnutrition in Asian countries, and a variety of plants able to survive weather extremes. On the horizon are bananas that produce human vaccines against infectious diseases such as hepatitis B; fish that mature more quickly; fruit and nut trees that yield years earlier, and plants that produce new plastics with unique properties. In 2000, countries that grew 99% of the global transgenic crops were the United States (68%), Argentina (23%), Canada (7%), and China (1%). Although growth is expected to plateau in industrialized countries, it is increasing in developing countries. The next decade will see exponential progress in GM product development as researchers gain increasing and unprecedented access to genomic resources that are applicable to organisms beyond the scope of individual projects. Many opponents of the use of the term 'genetic engineering' argue the operations of genes in combination with cell biochemistry are rather poorly understood and sometimes lead to unexpected side effects. Reluctance to recognize this field as "engineering" has become popular in the anti-globalization movement and safe trade movement, and is also widely held by most Green parties, and the major parties of France and Germany, which have resisted any agricultural policy favoring genetically modified food. j, c, g, k, c. These groups tend to resist the label 'engineer' as applied to such genetic modification most strongly. Technologies for genetically modifying (GM) foods offer dramatic promise for meeting some areas of greatest challenge for the 21st century. Like all new technologies, they also pose some risks, both known and unknown. Controversies surrounding GM foods and crops commonly focus on human and environmental safety, labeling and consumer choice, intellectual property rights, eth |