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Journal of Bacteriology, June 2003, p . 3317-3324, Vol . 185,
No . 11
Novel
Developmental Genes, fruCD, of Myxococcus xanthus: Involvement of
a Cell Division Protein in Multicellular Development
Takuya Akiyama,1 Sumiko Inouye,2 and Teruya
Komano1*
Department of Biology, Tokyo Metropolitan University, Minamiohsawa, Hachioji,
Tokyo 192-0397, Japan,1 Department of Biochemistry, Robert Wood
Johnson Medical School, Piscataway, New Jersey 088542
Received 14 November 2002/ Accepted 4 March 2003
Myxococcus xanthus is a gram-negative soil bacterium that undergoes
multicellular development upon nutrient starvation . In the present
study, two novel developmental genes, fruC and fruD, of
M . xanthus were identified and characterized . The FruD protein
has significant amino acid sequence similarity to the DivIVA proteins
of many bacteria including Bacillus subtilis . Vegetative cells
of the fruD mutant exhibited a filamentous phenotype . The
fruC and fruD mutants displayed similar
delayed-development phenotypes . The formation of tightly aggregated
mounds by fruC and fruD mutants was slower than that by
the wild-type strain . Spore formation by the fruC and fruD
mutants initiated after 30 h poststarvation, whereas wild-type M .
xanthus initiated spore formation after 18 h . The fruCD
genes were constitutively expressed as an operon during vegetative
growth and development . S1 mapping revealed that transcription
initiation sites of the fruCD operon were located 114 (P1) and
55 bp (P2) upstream of the fruC initiation codon . Only the P1
promoter was active during vegetative growth, while both the P1 and
P2 promoters were active during development . The FruD protein was
produced as a cytoplasmic protein and formed an oligomer during
vegetative growth and development .
Myxococcus xanthus, a gram-negative soil bacterium, is a model
organism for studying mechanisms of multicellular morphogenesis and
cell differentiation in prokaryotes, since the organism undergoes
multicellular development upon nutrient starvation (7) .
During vegetative growth, M . xanthus cells grow in nutrient
medium with a doubling time of approximately 4 h . Upon nutrient
starvation on a solid surface, vegetative growth ceases and cells
begin to gather into an aggregation center by gliding . Within 4 to 12
h poststarvation, the cells form mounds that are eventually converted
into fruiting bodies . In the mounds, the motile, rod-shaped
vegetative cells differentiate into nonmotile, refractile myxospores .
Myxospores are resistant to sonication, heat, desiccation, and other
stresses . When they are placed on a rich medium, they germinate to
initiate vegetative growth .
Many developmentally defective M . xanthus mutants were isolated
with TnV, a Tn5-derived transposon carrying the rep
region of pSC101 (11) . Among 855 independent TnV
insertions, six were identified as developmental mutations . Three TnV
insertions,
221,
328,
and
530,
were located within a single gene, lonD, essential for the
development of M . xanthus . The lonD gene is homologous
to the M . xanthus lonV and E . coli lon genes and is
identical to the M . xanthus bsgA gene (12,
31) . One TnV insertion,
786,
was located within the upstream region of the fruA gene (23) .
The fruA gene encodes a putative transcription factor essential
for the development of M . xanthus . The amino acid sequence of
the FruA protein contains a DNA-binding motif and has sequence
similarity to response regulators of two-component His-Asp phosphorelay
signal transduction systems (10, 23) .
The fruA gene was shown to play an important role in the C
signal transduction pathway (10, 28) .
Genetic studies suggested that FruA may be activated by
phosphorylation (10) . Recently, we performed two-dimensional
gel electrophoresis analysis to examine the effects of csgA
and fruA mutations on the expression of M . xanthus
developmental genes (16) . While the expression of
many developmental proteins was dependent on both fruA and
csgA, several proteins including protein S and DofA were
expressed in a fruA-dependent but csgA-independent
manner . A model of the role of fruA in the C signal transduction
pathway was proposed to explain these findings (10,
16) . The gene encoding the DofA protein was cloned
and characterized (14, 16) .
Regulation of fruA expression during vegetative growth and
development was analyzed recently (15) .
In this study, novel developmental genes fruC and fruD of M .
xanthus were identified . The fruC and fruD genes are
located 3 kb upstream of the fruA gene as an operon in the
M . xanthus chromosome . The fruC and fruD mutants
exhibited delayed-development phenotypes . The FruD protein exhibits
significant amino acid sequence similarity to the DivIVA proteins of
many bacteria .
Microbial strains and plasmids. The bacterial strains used in
this study were M . xanthus DZF1 sglA1 (17),
Escherichia coli DH5
supE44
lacU169
( 80
lacZ M15)
hsdR17 recA1 gyrA96 thi-1 relA1 (2), and
E . coli BL21(DE3) dcm ompT hsdS gal (29).
Saccharomyces cerevisiae PJ69-4A MATatrp1-901
leu2-3,112 ura3-52 his3-200 gal4 gal80 LYS2::GAL1-HIS3
GAL2-ADE2 met::GAL7-lacZ (19)
was also used .
Plasmid vector pUC19 (34) was used for cloning . pET11
Km-GST (23) was used for overexpression of the
gst-fruD gene . pSI1403attP (14) was
used for construction of lacZ transcriptional fusions . pGADT7
and pGBKT7 (Clontech) were used for yeast two-hybrid system
experiments . pMFA02 (23) is a pUC19 derivative carrying
the fruACD region .
Growth conditions. M . xanthus cells were grown at
30°C in Casitone-yeast extract (CYE) medium (4) or
on CYE agar (CYE medium containing 1.5% agar) . Kanamycin sulfate (40
µg/ml) and oxytetracycline (6.25 µg/ml) were used for the selection
of kanamycin-resistant (Kmr) and tetracycline-resistant
(Tcr) M . xanthus cells, respectively .
E . coli cells were grown at 37°C in Luria-Bertani medium (21) .
Ampicillin (100 µg/ml), kanamycin sulfate (50 µg/ml), or tetracycline
(12.5 µg/ml) was used when required . Yeast cells were grown at 30°C
in yeast-peptone-dextrose medium or synthetic dextrose (SD) medium (27) .
Photographs of vegetative M . xanthus cells were taken through
a phase-contrast microscope . To estimate average cell sizes,
the lengths of more than 200 cells were measured .
Development and sporulation. Development of M . xanthus
cells was induced on clone fruiting (CF) agar (13,
17) . M . xanthus cells were grown to late log
phase in CYE medium, washed once with TM buffer (10 mM Tris-HCl
[pH 7.6], 8 mM MgSO4), and resuspended in TM buffer at a density
of 2 x 1010 cells/ml .
Aliquots (10 µl) of cell suspension were spotted on CF agar and
incubated at 30°C . The spots were photographed through a dissecting
microscope .
The number of spores was measured as described by Jain and Inouye
(18) . Developing cells of M . xanthus were scraped off
the agar surface, suspended in TM buffer, and sonicated to disrupt
vegetative cells . Sonication-resistant refractile spores were counted
in a counting chamber under a microscope . For germination,
sonication-resistant refractile spores were treated at 50°C for 2 h,
spread on a CYE agar plate, and incubated at 30°C for 5 days .
Colonies of vegetative cells were counted .
Recombinant-DNA techniques. Preparation of chromosomal and
plasmid DNA, transformation, and other methods of DNA manipulation
were performed as described elsewhere (26) . pFC1
was constructed by inserting a 384-bp ApaLI-MaeI
fragment containing the fruC promoter region into the HincII
site of pUC19 .
pTC1 was constructed by inserting a 1.4-kb EcoRI-BalI fragment
containing the Tcr gene of pBR322 into the SalI site of
pMP001 (32), a pHSG399 derivative carrying the Mx8
intP-attP region . To construct plasmids for the
complementation of the fruC mutation, three DNA fragments
(Fig . 1A) were synthesized by PCR with appropriate
primers, each containing an EcoRI site at the 5' end, and inserted
into the EcoRI site of pTC1, generating pCC1, pCC2, and pCC3 .
pCC series plasmids were integrated into the Mx8 attB site of
the M . xanthus fruC::Km
10
chromosome to generate MxCC1, MxCC2, and MxCC3, respectively .
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FIG . 1 . (A) Gene organization of the fruACD region of M .
xanthus . Top horizontal line, restriction map . Circles and
triangles, locations of Kmr and Tcr insertion
mutations, respectively; open and filled symbols, insertional mutations
promoting proficient development and those producing deficient
development, respectively; stippled bar, location of
fruCD1
mutation; arrows below the lines, fruACD genes and open reading
frames deduced from the nucleotide sequence . The lower part of diagram
shows an expanded view of the fruC region and the inserts of
plasmids used for complementation experiment and promoter activity
analysis . Bent arrows, P1 and P2 transcription initiation sites . The
indicated DNA segments were synthesized by PCR and inserted into pTC1 or
pSI1403attP . Nucleotide A of the fruC ATG initiation codon is
indicated as +1 . (B) FruC amino acid sequence deduced from the
nucleotide sequence . Numbers on the right indicate residues from the
N-terminal end . (C) Alignment of amino acid sequences of M . xanthus
FruD and various bacterial DivIVA proteins . White lettering on a black
background, identical amino acid residues in three or more sequences .
Mxa, M . xanthus; Cpe, C . perfringens; Bha, B .
halodurans; Lin, L . innocua; Bsu, B . subtilis.
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Insertion and deletion mutations in pMFA02 were made by digestion of
pMFA02 DNA with appropriate restriction enzymes and ligation with a
Kmr DNA fragment as described previously (23)
(Fig . 1A) . To construct M . xanthus fruC::Km
10,
fruD::Km
12,
and
fruCD1
mutants, pMFA02 plasmid DNA was digested with MaeI, XhoI,
and MaeI and XhoI, respectively, treated with an E .
coli DNA polymerase I Klenow fragment, and then ligated with a
1.3-kb HindIII-SmaI fragment containing the Kmr
gene of Tn5 . Then the resultant plasmid DNAs were linearized
with ScaI and introduced into M . xanthus DZF1 cells by
electroporation (20) . Replacement of the
chromosome with Kmr insertions by double-homologous recombination
was confirmed by Southern blot analysis (26) .
RT-PCR. Total RNAs were extracted from vegetative cells and
developing M . xanthus DZF1 cells at 6, 12, and 24 h
poststarvation by the hot-phenol method (1) and
treated with DNase I . The DNA primer 5'-CTTCACTTCCTCCTTGAGCG-3' was
hybridized with 1 µg of total RNA and treated with RAV-2 reverse
transcriptase (RT) as specified by the manufacturer (Takara, Kyoto,
Japan) . Then, PCR was performed with DNA primers
5'-ATGAAAATCACTCCGCTCG-3' and 5'-CGATGTTCTCCTTCACCACC-3' . The PCR
product was analyzed by 2% agarose gel electrophoresis .
S1 nuclease mapping. The S1 nuclease mapping procedure was
adapted from the method of Berk and Sharp (3) .
First, the 5' ends of a 2,993-bp KpnI-MaeI fragment of
pMFA02 DNA were labeled with [ -32P]ATP
(3,000 Ci/mmol) by using Ready-To-Go T4 polynucleotide kinase
(Amersham Pharmacia Biotech) . Then the end-labeled fragment was
digested with ApaLI . The 384-bp ApaLI-MaeI
fragment was hybridized with 40 µg of total RNA from vegetative cells
or developing cells at 6, 12, and 24 h poststarvation and treated
with 40 U of S1 nuclease at 37°C for 30 min . Then, protected DNA
fragments were analyzed on 6% polyacrylamide gels containing 8 M
urea .
Promoter activity during vegetative growth and development.
To separately assess in vivo promoter activity, the P1 promoter
region (positions 97 to 215 upstream from the fruC initiation
codon) and the P2 promoter region (positions 50 to 128 upstream from
the fruC initiation codon) were synthesized by PCR with
appropriate primers containing BamHI sites at their 5' ends
and then cloned into the BamHI site of pSI1403attP, giving pFL1
and pFL2, respectively (Fig . 1A) . The orientations and
sequences of inserted fragments were confirmed by DNA sequencing .
pFL1 and pFL2 were integrated into the Mx8 attB site of the
M . xanthus DZF1 chromosome to generate MxFL1 and MxFL2,
respectively . ß-Galactosidase specific activity was determined during
vegetative growth and development as described previously (14) .
Units of ß-galactosidase specific activity were nanomoles of o-nitrophenol
produced per minute per milligram of protein .
Preparation of antiserum against FruD. To purify the FruD
protein fused to glutathione S-transferase (GST), a gst-fruD
fusion gene under the control of a T7 promoter was constructed . The
fruD coding sequence was amplified by PCR and cloned into the
NdeI-BamHI site of pET11 Km-GST (23) to
generate pET11 Km-GST-fruD . E . coli BL21(DE3) cells
harboring pET11 Km-GST-fruD were grown at 37°C in
Luria-Bertani medium to an A620 of 0.5, then
isopropyl-ß-D-thiogalactopyranoside was added
at a final concentration of 1 mM, and the culture was incubated for
another 2 h . Induced cells from 200 ml of culture were harvested and
suspended in phosphate-buffered saline (PBS; 137 mM NaCl, 8.1 mM Na2HPO4,
2.7 mM KCl, 1.5 mM KH2PO4 [pH 7.4]) at a
density of 2 x 1010 cells/ml and
then passed through a French pressure cell . The cell lysate was
centrifuged at 10,000 x g
at 4°C for 10 min . The pellet containing the GST-FruD inclusion body
was denatured with 10 ml of PBS containing 3 M urea . The solubilized
crude extract was refolded by dialysis against PBS . After dialysis,
approximately 10% of the GST-FruD fusion protein was present in the
soluble fraction . The soluble fraction containing the refolded
GST-FruD fusion protein was loaded on a column of
glutathione-Sepharose 4B (Amersham Pharmacia Biotech) equilibrated
with PBS . The GST-FruD fusion protein was eluted with elution buffer
(50 mM Tris-HCl [pH 8.0], 10 mM reduced glutathione) . The purified
GST-FruD fusion protein was used to immunize a rabbit .
Western blot analysis. Cell proteins were separated by
sodium dodecyl sulfate-15% polyacrylamide gel electrophoresis
(SDS-15% PAGE) and transferred to a nitrocellulose membrane . The
membrane was blocked with PBS containing 3% skim milk, reacted with a
1,000-fold dilution of rabbit anti-GST-FruD antiserum, and then
reacted with a 100-fold dilution of a biotin-labeled goat anti-rabbit
immunoglobulin G antibody . The FruD protein was detected by
immunoblotting with an ABC-POD (R) kit (Wako, Osaka, Japan) .
FruD production during vegetative growth and development of M .
xanthus. Vegetative cells and developing cells at 24 and 48 h
poststarvation were dissolved in solubilizing buffer (2% SDS, 0.08 M
Tris-HCl [pH 6.8], 10% glycerol, 0.1 M ß-mercaptoethanol) and
boiled for 5 min . Each sample was analyzed by SDS-15% PAGE .
Then, the FruD protein was detected by Western blot analysis using
anti-GST-FruD antiserum .
Subcellular fractionation of M . xanthus cells. M .
xanthus vegetative cells were lysed by EDTA-lysozyme and
fractionated to periplasm, cytoplasm, and total-membrane fractions as
described previously (24) . Each fraction was analyzed by
SDS-15% PAGE . Then, localization of the FruD protein was determined
by Western blot analysis using anti-GST-FruD antiserum .
Gel filtration chromatography. M . xanthus vegetative
cells and developing cells at 6 h poststarvation were harvested,
washed once with 0.1 M phosphate buffer (pH 6.8), resuspended in the
same buffer, disrupted by sonication, and centrifuged at 100,000
x g for 30 min at 4°C . The
supernatant fraction was subjected to TSK-Gel G2000 (Tosoh, Tokyo,
Japan) gel filtration chromatography (0.1 M phosphate buffer [pH
6.8]; flow rate, 0.1 ml/min) . Each fraction was analyzed by SDS-15%
PAGE . The FruD protein was detected by Western blot analysis
using anti-GST-FruD antiserum .
Yeast two-hybrid system. The fruD coding sequence was
cloned into the NdeI-BamHI sites of pGADT7, containing
the GAL4 activation domain, and pGBKT7, containing the GAL4
DNA-binding domain, to generate pGADT7-fruD and pGBKT7-fruD,
respectively . Yeast transformation and two-hybrid selection were
carried out with host strain PJ69-4A (19) . ß-Galactosidase
activity from a reporter gene was assayed as described by Miller
(21) .
Nucleotide sequence accession number. The nucleotide
sequence data for fruCD reported in this paper will appear in
the DDBJ, EMBL, and GenBank nucleotide sequence databases under
accession no.
AB100269 .
Two novel genes required for multicellular development in M . xanthus.
Previously, we cloned and characterized the fruA gene, encoding
a putative transcription factor required for multicellular development
of M . xanthus (23) . To investigate the possible
presence of another developmental gene(s) in this region, the 4.4-kb
fruA upstream region was sequenced (Fig . 1A) .
DNA sequence analysis revealed that five novel open reading frames
exist in this region . orf269 encodes a hypothetical protein
conserved in several bacteria, and orf169 encodes a DnaJ
family protein . Six novel Kmr insertion mutations ( 9
through
14)
as well as one deletion mutation ( 1)
in this region were constructed in an E . coli plasmid . All seven
mutations could be introduced into the M . xanthus chromosome
by double-homologous recombination, indicating that no genes
essential for vegetative growth are present in this region . M .
xanthus cells carrying Kmr
10,
11,
12,
and
13
insertions and the
1
deletion exhibited delayed-development phenotypes, while those
carrying Kmr
9
and
14
insertions were development proficient . These results indicate that
the two novel genes, designated fruC and fruD, are
developmental genes (Fig . 1A) . The fruC and
fruD genes are located 3 and 3.5 kb upstream of the fruA
gene, respectively, and are orientated oppositely to fruA .
To analyze the upstream regulatory region of the fruC gene,
fruC segments with various lengths of upstream regions were
integrated into the Mx8 attB site of the M . xanthus fruC::Km
10
chromosome, generating MxCC1 to MxCC3 (Fig . 1A) . MxCC1
exhibited development similar to that of the wild type, whereas MxCC2
and MxCC3 exhibited delayed-development phenotypes . The results
of complementation experiments indicate that a DNA segment up to 497
bp upstream of the fruC initiation codon is required for
fruC expression .
Amino acid sequences of the fruC and fruD products.
The fruC gene encodes a protein of 134 amino acids with a calculated
molecular weight of 14,564 (Fig . 1B) . No known proteins
in databases have significant amino acid sequence similarity to the
FruC protein . Computer analysis suggests that the FruC protein is
a cytoplasmic protein . The fruD gene encodes a protein of 175
amino acids with a calculated molecular weight of 20,390 (Fig .
1C) . The deduced amino acid sequence of the FruD protein has
up to 45% identity with those of DivIVA proteins of many bacteria
including Geobacter metallireducens, Clostridium perfringens,
Bacillus halodurans, Bacillus subtilis, and Listeria
innocua . Computer analysis suggests that the FruD protein is a
cytoplasmic protein and that the central region of the FruD protein
has an
-helical
coiled-coil structure . B . subtilis DivIVA is also a
cytoplasmic protein containing an
-helical
coiled-coil structure (5, 9) . As
expected from the high G+C content of M . xanthus genomic DNA,
M . xanthus genes have very high G+C content at the third-codon
positions . The codon usages in the fruC and fruD genes
were similar to those in other M . xanthus genes, and the G+C
contents at the third-codon positions in the fruC and fruD
genes were 91 and 90%, respectively .
Characterization of the fruCD mutants. M . xanthus
fruC::Km
10,
fruD::Km
12,
and
fruCD1
cells grew at the same rates as wild-type DZF1 cells in CYE medium.
B . subtilis divIVA mutants produced filamentous cells,
together with a few minicells (5, 8,
25) . In M . xanthus fruD::Km and
fruCD1
vegetative cultures, filamentous cells formed more frequently than in
DZF1 cultures, while no minicells were found (data not shown) . The
average lengths of M . xanthus fruD::Km (11.9 ± 9.2 µm)
and
fruCD1
(11.0 ± 7.1 µm) vegetative cells were greater than that of DZF1 cells
(6.3 ± 1.6 µm), while that of fruC::Km vegetative cells (5.6 ±
1.5 µm) was similar to that of DZF1 cells . These results suggest that
the M . xanthus fruD mutant exhibits some impairment of cell
division .
To examine the effects of fruC and fruD mutations on fruiting
body formation, the processes of development in M . xanthus fruC::Km,
fruD::Km,
fruCD1,
and wild-type DZF1 strains were compared . Vegetative cells of each
strain were concentrated, spotted on CF agar plates, and incubated at
30°C . The morphological changes during the development of each strain
were photographed (Fig . 2A) . The time courses for
fruC, fruD, and
fruCD1
mutant aggregation were slower than that measured for DZF1 . Although
the developmental time courses for the three mutants were slower
than that for DZF1, the final fruiting body morphologies of the
three mutants were similar to that of DZF1 . When the fruC,
fruD, and
fruCD1
mutants were spotted on TM buffer-agar plates, similar delays in
development were observed .
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FIG . 2 . (A) Morphogenesis during the development of M . xanthus
DZF1 (wild type) and fruC::Km
10,
fruD::Km
12,
and
fruCD1
mutants . Vegetative cells of each strain were spotted on CF agar plates .
The spots were photographed through a dissecting microscope at the
indicated times . (B) Sporulation of M . xanthus DZF1 (wild type)
and fruC::Km
10,
fruD::Km
12,
and
fruCD1
mutants . Vegetative cells (2 x 108)
of each strain were spotted on CF agar . At the indicated times, the
spots were scraped off the agar surface and sonicated . The refractile
spores were counted in a counting chamber in triplicate . Open circles,
DZF1 (wild type); solid squares, fruC::Km
10
mutant; solid triangles, fruD::Km
12
mutant; solid diamonds,
fruCD1
mutant.
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Sporulation of the fruCD mutants. To investigate the
effects of the fruCD mutations on spore formation, the
processes of sporulation for M . xanthus fruC::Km, fruD::Km,
fruCD1,
and wild-type DZF1 strains were compared . Vegetative cells of each
strain were concentrated and spotted on CF agar plates . Each spot was
scraped off the agar surface during development, and the refractile
spores were counted (Fig . 2B) . In DZF1, spore
formation started 18 h poststarvation . The number of DZF1 spores
increased steadily until 30 h, when the number reached a maximal
value . In contrast, the spore formation of the fruC, fruD, and
fruCD1
mutants initiated similarly at 30 h poststarvation . After that time,
the number of spores in the three mutants increased steadily until 48
h, when the number reached a maximal value . The rates of spore
formation for the three mutants were similar to that for the wild
type . The numbers of spores produced by the three mutants after 96 h
were approximately 60% of the number produced by DZF1 (Fig.
2B) . Over 75% of myxospores obtained from the
fruiting bodies of fruC, fruD, and
fruCD1
mutants and the wild-type DZF1 strain aged for 96 h germinated and
formed colonies on a CYE plate after 5 days (data not shown) .
Expression of the fruCD genes during vegetative growth and
development of M . xanthus. The expression of the fruCD
genes was examined by RT-PCR analysis (Fig . 3) .
Total RNAs were prepared from DZF1 vegetative cells and developing
cells at 6, 12, and 24 h poststarvation and treated with RT . The
synthesized cDNA was used as a template for PCR with primers within
the fruD gene . The expected 133-bp RT-PCR product was
amplified from total RNAs of every stage when treated by RT (Fig.
3, lanes 5 to 8), while it was not detectable in
the absence of RT treatment (Fig . 3, lanes 1 to 4) . Another
PCR was performed with forward and reverse primers within the
fruC and fruD genes, respectively . An RT-PCR product was also
amplified in this experiment (data not shown) . These results
indicate that the fruCD genes are expressed as an operon during
vegetative growth and development .
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FIG . 3 . Detection of the fruD transcript during vegetative growth
and development of M . xanthus . Shown is RT-PCR analysis of
fruCD expression in M . xanthus . Total RNAs prepared from
vegetative cells (V) and developing cells at 6 (D6), 12 (D12), and 24 h
(D24) poststarvation were treated with (+RT) or without (-RT) RT and
subjected to PCR with appropriate primers . C, PCR product amplified from
the M . xanthus DZF1 chromosome DNA; M, molecular weight
standards, sizes of which are given on the left . Arrow, position of the
133-bp PCR product.
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Determination of the transcription initiation sites in the fruCD
operon. To determine the transcription initiation site of the fruCD
operon, S1 nuclease mapping analysis was performed with total
RNAs prepared from vegetative cells and developing cells at 6, 12,
and 24 h after starvation of M . xanthus DZF1 . For RNAs from
vegetative cells, one transcription initiation site (P1) was detected
114 bp upstream of the initiation codon of the fruC gene (Fig.
4A, lane V) . For RNAs from developing cells, P1 and
P2 transcription initiation sites were detected 114 and 55 bp,
respectively, upstream of the initiation codon of the fruC
gene (Fig . 4A and B, lanes D6, D12, and D24), while
transcription from P1 decreased during development . These results
indicate that the P1 promoter is active during vegetative growth and
that activity decreases during development, while the P2 promoter
is specific for development . From the sequence ladders shown in
Fig . 4A and B, P1 and P2 transcription initiation sites mapped
to the A and G residues, respectively, 114 and 55 bp upstream
of the fruC initiation codon . Based on these results, the -35
and -10 regions for the two promoters of the fruCD operon are
assigned as shown in Fig . 4C .
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FIG . 4 . (A and B) Transcription initiation sites of the fruCD
mRNA . Total RNAs were prepared from M . xanthus DZF1 vegetative
cells (V) and developing cells at 6, 12, and 24 h poststarvation and
subjected to S1 mapping analysis . Arrows, positions of the S1-protected
fragments; G, A, T, and C, sequence ladder generated by the dideoxy
chain termination method with appropriate primers and with pFC1 DNA as
the template . Panels A and B represent different locations of the gel
for S1 mapping analysis . (C) Nucleotide sequence of the fruCD
promoter region . Bent arrows, transcription initiation sites . The -35
and -10 regions and the putative Shine-Dalgarno sequence (SD) are
underlined . The start codon of fruC is boxed . The N-terminal
amino acid sequence of FruC is also indicated.
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To demonstrate the in vitro activity of the P1 and P2 promoters, P1-lacZ
and P2-lacZ transcriptional fusion genes were constructed and
integrated into the Mx8 attB site of the M . xanthus DZF1
chromosome, giving MxFL1 and MxFL2, respectively . MxFL1 exhibited
19 and 15 U of ß-galactosidase activity during vegetative
growth and 12 h poststarvation, respectively . MxFL2 exhibited 14 and
21 U of ß-galactosidase activity during vegetative growth and 12 h
poststarvation, respectively . These results indicate that P1 and P2
display promoter activity predominantly during vegetative growth and
during development, respectively .
FruD protein production during vegetative growth and development.
To examine FruD production during vegetative growth and development,
total protein from vegetative cells and developing cells at 24 and 48
h after starvation of M . xanthus DZF1 and fruC::Km and
fruD::Km mutants was separated by SDS-PAGE and subjected to
Western blot analysis using anti-GST-FruD antiserum (Fig .
5A) . In DZF1 cells, a protein band at 22 kDa was detected
during vegetative growth and development; the density of the 22-kDa
band decreased during development (Fig . 5A, lanes 1 to
3) . The 22-kDa band was absent in the fruD::Km mutants during
vegetative growth and development (Fig . 5A, lanes 7
to 9) . These results indicate that the 22-kDa protein is the FruD
protein . The estimated molecular mass of the FruD protein is in good
agreement with the value of 20.4 kDa calculated from the DNA
sequence . Since anti-GST-FruD antiserum was used in the present
experiment, a protein band at 28 kDa is likely to be the GST protein
of M . xanthus . FruD production in the fruC::Km mutant
was similar to that in DZF1 (Fig . 5A, lanes 4 to
6), suggesting that the insertion mutation in the fruC gene
does not affect FruD production .
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FIG . 5 . (A) Western blot analysis of the fruD product . Total cell
proteins from vegetative cells (V) and developing cells at 24 (D24) and
48 h (D48) after starvation of M . xanthus DZF1 (wild type) and
fruC::Km
10
and fruD::Km
12
mutants were separated by SDS-PAGE . The FruD protein was detected by
Western blot analysis using anti-GST-FruD antiserum . Molecular mass
standards are given on the left . Arrow, position of the FruD protein .
(B) Subcellular localization of the FruD protein . To determine the
localization of the FruD protein, M . xanthus DZF1 cells from a
vegetative culture were disrupted and separated to periplasmic,
cytoplasmic, and total-membrane fractions . After SDS-PAGE, the FruD
protein was detected by Western blot analysis using anti-GST-FruD
antiserum . Molecular mass standards are given on the left . Arrow,
position of the FruD protein . Lanes: W, whole cell; P, periplasm; C,
cytoplasm; M, total membrane.
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Localization of the FruD protein. To examine the localization
of the FruD protein, vegetative cells of M . xanthus DZF1 were
disrupted and separated into periplasmic, cytoplasmic, and
total-membrane fractions . After SDS-PAGE of each fraction, the FruD
protein was detected by Western blot analysis using anti-GST-FruD
antiserum (Fig . 5B) . The FruD protein was detected
as the 22-kDa band only in the cytoplasmic fraction (Fig.
5B, lane 12) . These results indicate that the fruD gene
is expressed as a cytoplasmic protein . The localization of the
FruD protein in the cytoplasm is consistent with the prediction of
computer analysis described above .
Oligomer formation of the FruD protein. Oligomer formation
of the B . subtilis DivIVA protein has been reported (22) .
To examine whether the FruD protein exists as a monomer or an
oligomer under native conditions, soluble fractions from M .
xanthus vegetative cells and developing cells at 6 h
poststarvation were subjected to gel filtration chromatography . After
TSK-Gel G2000 gel filtration chromatography, each eluate fraction was
analyzed by SDS-PAGE followed by Western blot analysis using
anti-GST-FruD antiserum (Fig . 6A) . The FruD proteins from
both vegetative cells and developing cells were eluted at positions
corresponding to an oligomer . From the elution patterns of molecular
weight markers, the molecular mass of the native FruD oligomer
was estimated to be approximately 100 kDa . Since the monomer size of
the FruD protein was estimated to be 20.4 kDa as described above, it
is likely that the FruD protein exists as an oligomer in vegetative
and developing cells of M . xanthus .
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FIG . 6 . Oligomer formation of the FruD protein . (A) Gel filtration
chromatography of the FruD protein . Soluble proteins were prepared from
M . xanthus vegetative cells (Veg) and developing cells (Dev) at 6
h poststarvation and subjected to TSK-Gel G2000 gel filtration
chromatography . After SDS-PAGE of eluate fractions, the FruD protein was
detected by Western blot analysis using anti-GST-FruD antiserum . The
elution positions of molecular mass standards are indicated at the top
(290 kDa, glutamate dehydrogenase; 142 kDa, lactose dehydrogenase; 67
kDa, enolase; 32 kDa, adenylate kinase; 12.4 kDa, cytochrome c) .
(B) FruD-FruD interaction in the yeast two-hybrid system . S .
cerevisiae PJ69-4A cells containing pGADT7 and pGBDT7 with or
without the fruD gene were grown at 30°C on SD medium lacking
tryptophan, leucine, histidine, and adenine . The ß-galactosidase
activity (units) of each transformant is shown in parentheses.
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The yeast two-hybrid system was used to ascertain the FruD-FruD
interaction . The fruD gene was cloned into two-hybrid system
vectors pGADT7 and pGBDT7 . Yeast cells containing pGADT7-fruD
and pGBKT7-fruD formed colonies on SD medium lacking tryptophan,
leucine, histidine, and adenine at 30°C after 1 week (Fig .
6B), indicative of a FruD-FruD interaction . A similar result
was obtained when the FruD-FruD interaction was measured by a
ß-galactosidase assay (Fig . 6B) . These findings are
consistent with the results of gel filtration chromatography
demonstrating that the FruD protein exists as an oligomer .
In this study, two novel developmental genes, fruC and fruD,
of M . xanthus were analyzed . The fruCD genes were
constitutively expressed as an operon during vegetative growth and
development . From S1 nuclease mapping analysis, two distinct
promoters (P1 and P2) for the fruCD operon were identified .
The P1 promoter was active during vegetative growth and became weaker
during development, while the P2 promoter was specific for
development, suggesting that fruCD transcription is
differently regulated during vegetative growth and development of
M . xanthus . In vivo activity of the P1 and P2 promoters was
demonstrated by P1-lacZ and P2-lacZ transcriptional
fusions, although their ß-galactosidase activity was not so high .
Complementation experiments involving the fruC mutation
revealed that a fruC region further upstream is required for
fruCD expression . These results suggest the presence of a
cis regulatory element(s) at the region of fruC promoters
further upstream, since such regulatory elements are reportedly in
many M . xanthus genes, including dofA and fruA (14,
15) . Lack of the regulatory element(s) may explain the
observed ß-galactosidase activity from the P2 promoter during
vegetative growth .
Several M . xanthus genes which are expressed by two distinct
promoters have been reported . The M . xanthus sigD gene, encoding
a stationary-phase sigma factor, has two distinct promoters (33) .
Expression of the sigD gene is differently regulated by the
two promoters during vegetative growth and development: the
downstream of promoter is specific for development . The
sigD
mutant exhibited growth defects during the late log phase and
stationary phase, with reduced cell viability . The deletion mutant
displayed a delayed-development phenotype, yielding fewer spores than
the wild type .
The FruD protein displays significant amino acid sequence similarity
to the DivIVA proteins of many bacteria such as B . subtilis .
The DivIVA protein is known to be a functional homologue of the
E . coli MinE protein, although the amino acid sequences of the
DivIVA proteins exhibit no similarity to that of the MinE protein (5,
8) . The E . coli MinE protein determines the
division site, which is at the middle of the cell, by controlling the
topological specificity of MinCD division inhibitors . The B .
subtilis DivIVA protein also sequesters MinCD division inhibitors
at the cell poles (5, 8) . Vegetative cells
of the M . xanthus fruD mutant exhibited a filamentous
phenotype similarly to that the B . subtilis divIVA mutant .
Therefore, it is likely that the M . xanthus FruD protein is
involved in cell division, although the exact function of the FruD
protein in cell division is not clear .
A second function of the B . subtilis DivIVA protein in sporulation
has been reported (30) . In sporulating cells, the B .
subtilis DivIVA protein participates in chromosome segregation .
It interacts with the chromosome segregation machinery to help
position the oriC region of the chromosome at the cell pole in
preparation for asymmetric division . The developmental processes of
M . xanthus differ from those of B . subtilis in many
points . Upon nutritional starvation on a solid surface, M . xanthus
cells aggregate to form mounds, within which cells are converted into
myxospores . In contrast, upon nutritional starvation in a liquid,
B . subtilis cells undergo asymmetric cell division leading to the
formation of endospores . It is of great interest that a cell division
gene may also participate in bacterial development in both M .
xanthus and B . subtilis.
The fruC, fruD, and
fruCD
mutants displayed similar delayed-development phenotypes . The start
of spore formation in the three mutants was delayed by 12 h in
comparison to that for the wild type, while the rates of spore
formation in fruC and fruD mutants were similar to that
in the wild type . These results suggest that the FruC and FruD
proteins may play similar roles at an aggregation stage during
development in M . xanthus . It is possible that the retardation
of spore formation in fruC and fruD mutants is due to
delayed aggregation . The recently described genes espAB may
control the timing of spore formation in coordination with
aggregation (6) . Sporulation of the espA mutant
occurred faster than that of the wild type, while the espB
mutant sporulated more slowly than the wild type . The EspA protein
has significant amino acid sequence similarity to a sensor protein of
a two-component signal transduction system and is considered to
function as an inhibitor that delays sporulation until developmental
aggregation is complete, while the EspB protein may antagonize EspA
function . The phenotype of the espB mutant exhibits some
similarity to those of the fruC, fruD, and
fruCD1
mutants .
Homooligomer formation of the B . subtilis DivIVA protein has
been reported (22) . Since some B . subtilis
DivIVA mutants failed to form normal DivIVA oligomers, DivIVA
oligomer formation may be crucial for its activity . In the present
study, the size of the native form of the M . xanthus FruD
protein was estimated to be approximately 100 kDa . If one postulates
that the FruD protein forms homooligomers, the number of FruD
monomers may be four or five . This value is significantly lower than
the reported value of 10 to 12 for the B . subtilis DivIVA
oligomer . Further studies are necessary to understand the function of
the FruC and FruD proteins in the development of M . xanthus .
We are grateful to K . Takayama for critical reading of the manuscript .
This work was supported by a grant from the Ministry of Education,
Culture, Sports, Science and Technology of Japan .
* Corresponding author . Mailing address: Department of Biology,
Tokyo Metropolitan University, Minamiohsawa, Hachioji, Tokyo 192-0397, Japan .
Phone: 81-426-77-2568 . Fax: 81-426-77-2559 . E-mail: komano-teruya@c.metro-u.ac.jp.
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