|








| |
Journal of Bacteriology, December 2003, p . 7176-7183, Vol . 185, No . 24
Competence-Induced Cells of Streptococcus pneumoniae Lyse Competence-Deficient Cells of the Same Strain during Cocultivation
Hilde Steinmoen, Aina Teigen, and Leiv Sigve Håvarstein*
Department
of Chemistry and Biotechnology, Agricultural University of Norway,
N-1432 Ås, Norway
Received 20 June 2003/
Accepted 22 September 2003
Several
streptococcal species are able to take up naked DNA from the
environment and integrate it into their genomes by homologous
recombination . This process is called natural transformation . In
Streptococcus pneumoniae and related streptococcal species,
competence for natural transformation is induced by a peptide pheromone
through a quorum-sensing mechanism . Recently we showed that induction
of the competent state initiates lysis and release of DNA from a
subfraction of the bacterial population and that the efficiency of this
process is influenced by cell density . Here we have further
investigated the nature of this cell density-dependent release
mechanism . Interestingly, we found that competence-induced pneumococci
lysed competence-deficient cells of the same strain during
cocultivation and that the efficiency of this heterolysis increased as
the ratio of competent to noncompetent cells increased . Furthermore,
our results indicate that the lysins made by competent pneumococci are
not released into the growth medium . More likely, they are anchored to
the surface of the competent cells by choline-binding domains and cause
lysis of noncompetent pneumococci through cell-to-cell
contact .
Natural transformation in streptococci can be divided into separate
stages consisting of competence induction, double-stranded DNA binding,
single-stranded DNA uptake, and homologous recombination
(5,
11) . In Streptococcus
pneumoniae strain Rx, which has been used in this study, the
process is regulated by a secreted 17-amino-acid-long peptide pheromone
(CSP-1) which triggers competence development when it reaches an
external concentration of 1 to 10 ng/ml
(9) . In a batch culture,
this corresponds to about 107 cells/ml . CSP-1, which is
encoded by comC, is secreted by an ABC transporter (ComAB)
(12) and acts through a
two-component regulatory system consisting of a histidine kinase
receptor (ComD) and its cognate response regulator (ComE)
(10,
18,
26) . The alternative
sigma factor ComX, which presumably is directly regulated by ComE,
activates transcription of the late genes whose products are involved
in DNA binding, DNA uptake, and recombination, etc . The late genes
share a consensus promoter sequence called a cin-box
(TACGAATA)
(2,
19) that is recognized by
ComX when this sigma factor is associated with the RNA polymerase
holoenzyme (13,
15) .
Although much
has been learned about natural transformation in streptococci over the
past decade, some important questions remain to be answered . One such
question concerns the origin of the naked DNA taken up by competent
cells, the so-called donor DNA . Traditionally it has been believed that
DNA released from dead bacteria constitutes the only source of donor
DNA and that donor DNA will always be present in the natural habitats
of competent streptococci . In contrast to this view, evidence has
recently been presented indicating that a DNA release
mechanism is operating during competence to ensure that donor DNA is
available at the appropriate time
(25) . When a population
of S . pneumoniae is induced to competence, a subfraction of
the cell population will lyse and release its contents to the
surroundings . DNA release and DNA uptake reach their maxima at about
the same time, demonstrating that release of DNA from the donor cells
is coordinated in time and space with uptake by the recipients
(25) . So far, the DNA
release mechanism has not been fully elucidated, but it is known to be
influenced by cell density and to be under control of the same
quorum-sensing system that regulates competence development (ComCDE)
(25) . In addition,
evidence has been obtained indicating that LytA and maybe additional
choline-binding proteins (CBPs) are involved
(25) . In the present
work, experiments were carried out to discern between autolysis and
heterolysis (we define heterolysis as the lysis of one bacterium
brought about by another) . Our results show that competent pneumococci
are capable of lysing noncompetent pneumococci of the same strain
during cocultivation . These results suggest that heterolysis rather
than autolysis is the mechanism of DNA release in a competent
population of S . pneumoniae . However, it cannot be ruled out
that both mechanisms operate
simultaneously .
Bacterial strains and growth
conditions.
The strains
used in this study were derived from S . pneumoniae strain Rx
(Table
1) . Bacterial strains were grown in casein tryptone (CAT) medium
containing (per liter) 167 mmol of K2HPO4, 5 mg
of choline chloride, 5 g of tryptone, 10 g of
enzymatic casein hydrolysate, 1 g of yeast extract, and
5 g of NaCl
(16) . After
sterilization, glucose was added to a concentration of 0.2%.
Unless otherwise specified, all incubations were carried out at
37°C and all density measurements of bacterial cultures were
done spectrophotometrically at 550
nm .
| TABLE 1 . Bacterial
strains and plasmids
| |
Construction of S.
pneumoniae mutant strains.
The H4 mutant was constructed by
insertion-duplication mutagenesis . The primers LytA.1
(5'-ATATTGGTACCGCGGTTGGAATGCTGAGACCTATGCAGC-3')
and LytA.2
(5'-ATATTGGATCCGTACCAGTAGCCAGTGTCATTCTTCTGCC-3')
were used to amplify a
350-bp internal
region of the lytA gene . Purified genomic DNA from strain
CP1415 was used as a template . The resulting PCR fragment was cloned
into the pCR2.1-TOPO vector (Invitrogen) according to the
manufacturer's recommendations . The DNA fragment was excised by
SpeI and ApaI and ligated into multiple cloning site
II (MCS-II) of the vector pFW13
(20), precleaved with the
same enzymes . The ligation reaction was used to transform chemically
competent TOP10 cells (Invitrogen), and positive clones were selected
on agar plates containing 50 µg of kanamycin/ml . The
insertion-duplication mutant was made by natural transformation of
EK4166 by using purified pFW13 containing the amplified 350-bp
fragment . To verify that the correct mutant had been made, a PCR was
performed using primer LYTA.3
(5'-GAACAGATTTGCCTCAAGTCGGCG-3'),
located upstream of primer LYTA.1, and primer PFW13.4
(5'-TAACCGTATTACCGCCTTTG-3'),
located downstream of MCS-II in pFW13 . A PCR product of the
expected size was obtained, demonstrating that the pFW13 plasmid had
integrated into the lytA gene . The H4 mutant also had the
expected phenotype . It did not autolyze in the stationary phase even in
the presence of 0.1% Triton X-100 .
The H5 mutant was
constructed in the same way as the H4 mutant . PCR was performed with
the primers LytC.1
(5'-TTAAGCATGCGAATGTCGGCTGGGTTCACAGAGATGG-3')
and LytC.2
(5'-TTAAGGATCCCTCAACATCATAATAGATAGGGTAAGACAGG-3')
containing SphI and BamHI sites at their
5' ends, respectively . The resulting
380-bp internal
fragment of the lytC gene was then cloned into the pCR2.1-TOPO
vector . The cloned PCR fragment was excised from the pCR2.1-TOPO vector
with SphI and BamHI and ligated into the pEVP3 vector
(4), predigested with the
same restriction enzymes . Finally, the H5 mutant was constructed by
transforming competent EK100 cells with approximately 1 µg of
purified pEVP3 containing the 380-bp lytC fragment.
Insertion-duplication mutants were selected on agar plates containing
2.5 µg of chloramphenicol/ml . To confirm that the correct
LytC- mutant had been made, control PCRs were
carried out using genomic DNA from selected transformants as templates.
LytC.3 (5'-CAGATGGTCGTTACTCGCA-GAATG-3'),
corresponding to a sequence in the lytC gene
upstream of the site of integration, was used in combination with
pEVP3.3 (5'-GTAACTTCCACAGTAGTTCACCACC-3')
or PEVP3.4
(5'-CCCGGTCGACCCGTAATCTTACGTC-3').
These primers are complementary to sequences in the pEVP3
vector . The resulting PCR fragments were of the expected sizes,
demonstrating that the lytC gene had been disrupted and that
pEVP3 had been inserted in the correct orientation, placing the
promoterless lacZ gene of the pEVP3 vector under control of
the lytC promoter .
Rimini et al.
(23) have shown that the
rate of transcription of two small open reading frames termed
orf62 and orf51 increases about 12-fold upon
competence development . There is also a cin-box located immediately
upstream of the start codon of orf62, showing that
orf62 and orf51 belong to the ComX regulon . To be
able to monitor expression of the late genes under various growth
conditions, we wanted to construct a mutant containing a
ß-galactosidase reporter system controlled by the
orf62-orf51 promoter . This was carried out by amplifying a
270-bp DNA fragment corresponding to about half of
orf62 and the complete orf51 by PCR using the primers
orf62.1 (5'-CTCGCTCCCTTGGTTATCTTTGGAG-3')
and orf51.2
(5'-CTAGCATGACTTACCAAACTTTTTACGAAGG-3').
The DNA fragment was first cloned into the pCR2.1-TOPO
vector, then excised using the pCR2.1-TOPO polylinker restriction
enzymes BamHI and NsiI, and finally ligated into the
pEVP3 vector, precleaved with BamHI and NsiI.
Purified pEVP3 vector harboring the 270-bp fragment was then used to
transform the EK100 strain by natural transformation . Colonies growing
on agar plates containing 2.5 µg of chloramphenicol/ml were
isolated and tested for ß-galactosidase activity in the
presence and absence of CSP-1 . A mutant termed S1 that had the expected
phenotype was isolated . It produced no ß-galactosidase in the
absence of CSP-1, but the addition of 250 ng of this peptide
pheromone/ml induced strong expression of the ß-galactosidase
enzyme .
The EH1 strain is identical to EK4166, except that its
comE gene is replaced by a Kanr
cassette via double-crossover recombinations . To make the
EH1 strain, we took advantage of the pFW13 vector, which contains a
kanamycin resistance gene flanked by two MCSs, MCS-I and
MCS-II . An
880-bp DNA fragment, corresponding to
the region immediately upstream of the comE gene, was
amplified by PCR using the primers ComE.56
(5'-TTAAGCTAGCATCTTTCGTTTCAGATATGGTAAGTACG-3')
and ComE.57
(5'-TTAAGACGTCCATCCAATATTCTCTCTAGTCTCACTTGATG-3')
and ligated into the pCR2.1-TOPO vector as described above.
The DNA fragment was excised by AatII and NheI and
cloned into MCS-I of pFW13 . Next, a
750-bp DNA fragment,
corresponding to the region immediately downstream of the comE
gene, was amplified by PCR using the primers comE.53
(5'-ATTACCATGGTCTCAAAAGTGATTGACAATTAGCAAG-3')
and comE.55
(5'-ATTACATATGGCTATGGTACAATTACTGATGGAACAGCC-3')
and cloned into the pCR2.1-TOPO vector . The fragment was
excised from the pCR2.1-TOPO vector with NcoI and
NdeI and ligated into MCS-II of the pFW13 vector harboring the
880-bp fragment in MCS-I . Using this construct as a template and
comE.55 and comE.56 as primers, we amplified a
3,500-bp
fragment consisting of the Kanr gene flanked with the two
cloned fragments described above . This linear DNA fragment was then
used to transform the EK4166 strain by natural transformation . A
transformant growing on agar plates containing 150 µg of
kanamycin/ml was isolated and assayed for transformability by using
genomic DNA from the novobiocin-resistant strain CP1500 . The
transformant, termed EH1, turned out to be completely noncompetent,
demonstrating that the Kanr cassette most likely had
replaced the comE gene . To further verify that this was the
case, the site of integration of the Kanr cassette was
examined by PCR . The reaction was carried out with genomic DNA from
EH1, the primer tArg2
(5'-CATAGCTCAGCTGGATAGAGCATTCGCCTTC-3)
that is complementary to the Arg-tRNA gene upstream of the
comCDE operon, and the primer pFW13.6
(CATTTATTTACCTCCTTTT-GGTTACCTCAC-3) that is
complementary to the promoter region of the Kanr gene.
Analysis of the PCR by agarose gel electrophoresis revealed a single
band of the expected size, demonstrating that the Kanr
cassette had integrated at the correct
location .
ß-galactosidase
release assay.
An overnight
culture of the bacterial strain was diluted to an optical density at
550 nm (OD550) of 0.1 in prewarmed (37°C) CAT medium
and incubated until it reached an OD of 0.3 . To ensure vigorous growth,
it was rediluted to an OD550 of 0.05 and incubated further.
When the culture reached an OD of 0.1, two 10-ml samples were withdrawn
and induced to competence by addition of 250 ng of CSP-1
(NH2-EMRLSKFFRDFILQRKK-COOH)/ml, incubated for 30 min, and
placed on ice . The cells in the first sample were immediately removed
by centrifugation at 2,500 x g for 10 min at
4°C . Then the supernatant was sterile filtered using a
0.2-µm-pore-size filter and stored on ice until assayed . In
order to measure the total ß-galactosidase activity in the
culture, the cells in the second sample were lysed by incubating the
culture for 10 min at 37°C with 0.1% Triton X-100.
Following lysis, the culture was kept on ice until assayed . Samples
were collected at regular intervals during logarithmic growth
(OD550s of 0.1 and 0.2, etc.) . Uninduced samples were always
run in parallel as negative controls . All samples were assayed for
ß-galactosidase activity as described previously
(25) . Cocultivation
experiments were performed in the same way, except that 5 ml of each
strain was mixed when the OD550 of each culture reached 0.1
and 0.2, etc . In the experiment in which the effect of temperature on
ß-galactosidase release was examined, the cultures were placed
at their respective temperatures 30 min before competence was induced
by the addition of 250 ng of CSP-1/ml . At this stage, the
OD550s of the cultures had reached approximately 0.35 . Apart
from this, the assay was carried out as described
above .
Cocultivation transformation
assay.
To measure the
efficiency of gene exchange between two strains growing in liquid
medium, a cocultivation assay was developed . Overnight cultures of the
two strains H2 (ComA- ComE-
Novr) and A1 (ComA- Rifr) were
diluted to OD550s of 0.05 and incubated at 37°C
until they reached OD550s of 0.2 . To ensure vigorous growth,
both cultures were diluted once more to OD550s of 0.05 and
incubated further at 37°C . When they reached OD550s
of 0.1, 0.2, and 0.4, 0.5 ml from each culture (H2 and A1) was
withdrawn and mixed in a 15-ml plastic tube containing 250 ng of CSP-1.
The mixed strains were incubated at 37°C for 30 min, diluted
four times with prewarmed CAT medium, and then further incubated at
37°C for 60 min before being plating onto CAT agar plates
containing 2 µg of rifampin/ml and 5 µg of
novobiocin/ml . After incubation of the plates at 37°C for 24 to
48 h, the number of transformants resistant to both
antibiotics was determined . Uninduced samples were run in parallel as
negative controls . Identical gene exchange assays were carried out by
cocultivating strains H3 and H6 and strains A1 and
H1 .
Competence-induced
heterolysis.
During
competence development in a population of S . pneumoniae cells,
a subfraction of the population was lysed, causing release of DNA to
the surroundings (25).
Addition of CSP-1 did not elicit a corresponding response in a
competence-deficient mutant in which the response regulator ComE had
been disrupted . ComE, which is part of the two-component regulatory
system (ComDE) that monitors the external concentration of the
competence pheromone, is a key component in the signal transduction
pathway triggering competence development in S . pneumoniae.
The absence of cell lysis in a ComE- mutant clearly
shows that the signal transduction pathway encoded by comDE
also controls the expression of genes involved in cell lysis and
strongly suggests that this phenomenon is an integral part of natural
transformation
(25) .
To further
elucidate the mechanism behind competence-induced cell lysis, we asked
ourselves whether transfer of DNA can take place between a
competence-inducible strain and a competence-deficient strain of S.
pneumoniae . In order to answer this question, a cocultivation
experiment was carried out with the two S . pneumoniae strains
A1 (ComA- Rifr) and H2
(ComA- ComE- Novr).
Vigorously growing cultures of A1 and H2 were mixed in equal amounts at
OD550s of 0.1, 0.2, and 0.4, subjected to 250 ng of
CSP-1/ml, incubated for 1.5 h at 37°C, and spread
onto agar plates containing 2 µg of rifampin/ml and 5
µg of novobiocin/ml (see Materials and Methods for details).
The plates were incubated at 37°C, and the number of
transformants resistant to both antibiotics was determined the next
day . The results presented in Table
2 show that competence-induced A1 cells must have taken up DNA released
from the competence-deficient H2 strain . In a negative control
experiment run in parallel, CSP-1 was omitted . As expected, no
transformant was obtained in this experiment . The Novr DNA
taken up by the A1 cells may have originated from dead H2 cells and
been present in the growth medium of the H2 cells before they were
mixed with the A1 cells . Alternatively, release of Novr DNA
may have been an active process mediated by the A1 cells after they had
been induced to competence by addition of CSP-1 . To discern between
these two mechanisms, we set up a cocultivation experiment in which the
competence-deficient (ComE-) strain EH1 expressing
Escherichia coli ß-galactosidase from a constitutive
promoter was mixed with an equal amount of the competence-inducible
strain EK100 lacking this enzyme . When the EK100 strain was induced to
competence by addition of CSP-1, cytoplasmic ß-galactosidase
from the EH1 strain was released to the growth medium . However, very
little ß-galactosidase activity was detected in the medium of
the negative control, i.e., when no CSP-1 had been added to the mixed
culture (Fig.
1) . Furthermore, when CSP-1 was added to a culture consisting only of the
EH1 strain, no release of ß-galactosidase was detected (results
not shown) . These results can only be explained by a release mechanism
that involves heterolysis, i.e., lysis of the competence-deficient EH1
strain by the competent EK100 strain .
| TABLE 2 . Cocultivation
of a competence-inducible strain (A1) and a competence-deficient strain
at different densities during logarithmic growth
| |
| FIG . 1 . Competence-induced
release of intracellular ß-galactosidase into the growth medium
during cocultivation of S . pneumoniae strains EH1 and EK100.
The EH1 strain is competence deficient and expresses
ß-galactosidase from a constitutive promoter . In contrast, the
EK100 strain is competence inducible but ß-galactosidase
deficient . Cultures of EH1 and EK100 growing in parallel were mixed at
a ratio of 1:1 when they reached OD550s of 0.1 and 0.2, etc.
After 30 min with or without CSP-1, samples were collected for analysis
of ß-galactosidase activity . Both cell-free growth medium
(supernatants) and cell lysates (supernatants and lysed cells) were
assayed . The amount of ß-galactosidase present in the
supernatants (estimated in Miller units) is given as a percentage of
the total activity present in the cell lysates . Black columns represent
cocultivation in the presence of 250 ng of CSP-1/ml . Grey columns
represent cocultivation in the absence of CSP-1 . The results shown are
representative of results from three separate
experiments.
| |
Do
competent cells release a lysin?
Previously it was shown that the
fraction of cells lysed when cultures of S . pneumoniae are
induced to competence at different cell densities increases with
OD550s of up to 0.3 to 0.4 and then declines
(25) . The mechanism
behind this cell density dependency is not understood, but it is likely
that the decline in release can be explained, at least in part, by loss
of competence induction towards the end of the logarithmic growth phase
(9) . Our finding that
competent cells can lyse competence-deficient cells suggests that
competent cells may secrete a lysin . If this is the case, it would be
expected that increasing the ratio of competence-inducible cells to
competence-deficient cells would result in more-efficient lysis . In
cocultivation experiments similar to the one described above, different
ratios of strains EH1 and EK100 were used (Fig.
2) . The results of these experiments clearly showed that the percentage
of EH1 cells lysed increased when the ratio of competent EK100 cells to
competence-deficient EH1 cells increased . Thus, the competent cells
must produce one or more lysins that attack noncompetent cells and lyse
them . If the lysin(s) is secreted into the external medium, it should
be possible to induce lysis of noncompetent cells by adding cell-free
medium from a culture of competent cells . A vigorously growing culture
of EK100 was induced to competence by addition of 250 ng of CSP-1/ml at
an OD550 of 0.4 and incubated at 37°C for 30 min.
The cells were removed by centrifugation, and the supernatants were
sterile filtered . Uninduced samples were run in parallel as negative
controls . The temperature of the sterile-filtered supernatants was
adjusted to 37°C, and then the supernatants were mixed
immediately with equal volumes of vigorously growing cultures of EH1
cells . These mixtures were incubated for another 30 min, and the
supernatants were harvested and assayed for ß-galactosidase
activity as described before . We did not detect any release of
ß-galactosidase into the culture sample in which EH1 cells had
been mixed with growth medium from competence-induced EK100 cells
(results not shown) . To ensure that the EH1 cells employed in these
experiments produced normal amounts of ß-galactosidase,
parallel samples were lysed by addition of 0.1% Triton X-100 and
their total enzyme contents were measured . The levels of total
ß-galactosidase activity present in these samples were as
expected . In conclusion, it seems that the lysin produced by competent
S . pneumoniae cells is not released into the growth medium.
Rather, our results suggest that the lysin is attached to the cell
surface and that cell-cell contact is necessary for heterolysis to take
place .
| FIG . 2 . Release
of cytoplasmic ß-galactosidase from the competence-deficient
EH1 strain during cocultivation with strain EK100 . The EK100 strain is
competence inducible when CSP-1 is added but is completely without
endogenous ß-galactosidase activity . When cultures of the two
strains both reached an OD550 of 0.4, they were mixed at
different ratios and 250 ng of CSP-1/ml was added immediately . After 30
min, samples were harvested and cell-free supernatants and cell lysates
(supernatants and lysed cells) were prepared and assayed for
ß-galactosidase activity . Uninduced samples were run in
parallel as negative controls . The amount of ß-galactosidase
present in the supernatants (estimated in Miller units) is given as a
percentage of the total activity present in the cell lysates . Closed
squares represent results for supernatants from CSP-1-induced cells,
and open squares represent results for supernatants from uninduced
cells . The experiment was repeated several times with similar
results.
| |
Role of LytA.
A good candidate for the unidentified
lysin discussed above is the murein hydrolase LytA, which is anchored
noncovalently to the pneumococcal cell wall through six choline-binding
domains (14) . It is
expressed in noncompetent cells, but its expression is upregulated
about sixfold during competence development
(23) . It has previously
been shown that a LytA- mutant releases less DNA
when induced to competence than a wild-type strain
(25) . Here we decided to
make a LytA-deficient mutant that expresses E . coli
ß-galactosidase constitutively (H4) and to measure
CSP-1-induced release of ß-galactosidase from this mutant at
different cell densities . It turned out that significantly less
ß-galactosidase is released from the LytA-
mutant during competence development than from the positive control.
The difference is two- to fourfold depending on the cell density of the
culture (Fig.
3) . However, at OD550s of 0.3 and 0.4, the amount of
ß-galactosidase released from the LytA-
mutant is still almost 10-fold higher than that released from the
uninduced control (Fig.
3) . This indicates that
more than one lysin is involved in the release mechanism . This view is
supported by the results of the DNA exchange experiment presented in
Fig.
4 . Strains resistant to novobiocin (H1) and rifampin (A1) were
cocultivated at OD550s of 0.1, 0.2, and 0.4 as described
above, and transformants were selected on agar plates containing 2
µg of rifampin/ml and 5 µg of novobiocin/ml . In
parallel, the two LytA- mutants H3 and H6, resistant
to novobiocin and rifampin, respectively, were cocultivated and the
number of transformants resistant to both antibiotics was determined.
The results show that the numbers of transformants obtained with the
LytA- mutants are four- to eightfold lower
(depending on cell density) than the corresponding numbers obtained
with the positive control .
| FIG . 3 . Comparison
of strains EK4166 and H4 with respect to the level of
competence-induced release of cytoplasmic ß-galactosidase . The
lytA gene of strain H4 has been disrupted, but otherwise the
strain is identical to EK4166 . At different cell densities
(OD550s of 0.1 to 0.7), samples were withdrawn and induced
to competence by adding 250 ng of synthetic CSP-1/ml . After 30 min at
37°C, cell-free supernatants were prepared and assayed for
ß-galactosidase activity . Corresponding uninduced samples were
run in parallel as negative controls . Closed squares, activity in
supernatants from CSP-1-induced EK4166 cells; open squares, activity in
supernatants from uninduced EK4166 cells; closed circles, activity in
supernatants from CSP-1-induced H4 cells; open circles, activity in
supernatants from uninduced H4 cells . The ß-galactosidase
activity is given in Miller units, and amounts shown are the means
± standard errors of results for triplicate
samples.
| |
| FIG . 4 . Influence
of LytA on efficiency of gene exchange in vitro . Two LytA-deficient
S . pneumoniae strains, H3 (Novr) and H6
(Rifr), were mixed at three different densities
(OD550s of 0.1, 0.2, and 0.4) and induced to competence by
adding 250 ng of CSP-1/ml . After cocultivation for 1.5 h,
cells were plated onto agar plates containing rifampin and novobiocin
and incubated at 37°C . Transformants were scored the next day.
The two strains H1 (Novr) and A1 (Rifr), both
containing intact lytA genes, were treated in the same way.
Black columns represent numbers of transformants obtained by
cocultivation of H1 and A1, while white columns represent numbers of
transformants obtained by cocultivation of the LytA-deficient strains
H3 and H6 . Values shown are numbers of CFU of transformants per
milliliter and are the means ± standard errors of results for
triplicate samples . Uninduced samples, receiving no peptide pheromone,
were run in parallel as negative controls . The numbers of transformants
observed in uninduced samples ranged from 0 to 200
CFU/ml.
| |
LytC is not the
missing lysin.
Evidently,
LytA plays an important role in competence-induced DNA release in
S . pneumoniae. However, as demonstrated above, there must be
at least one additional lysin produced by competent pneumococci . The
release mechanism is sensitive to the presence of choline in the growth
medium, demonstrating that one or more CBPs are involved
(25) . Without affecting
transformability, the presence of 0.02% choline reduces release
of ß-galactosidase by about 50% and 0.2% reduces
release by up to 90% (results not shown) . We therefore
hypothesized that another choline-binding murein hydrolase could be
involved . The most promising candidate was the choline-binding lysozyme
LytC (7,
14), which had been
reported to be competence induced
(23) . LytC has optimum
activity at 30°C
(7), and we therefore
first investigated whether the competence-induced lysis mechanism is
more efficient at this temperature . The results given in Fig.
5 show that this indeed is the case . Release of ß-galactosidase
at 30°C increases two- to threefold compared to the
corresponding release at 37°C . Interestingly, we also found
that release is practically abolished at 40°C . In principle,
high temperatures may influence release of ß-galactosidase
indirectly by suppressing competence induction or they may act directly
on the cell lysis mechanism . In order to address this question, we used
a mutant (S1) that harbors a chromosomally located lacZ
reporter gene under control of the orf62-orf51 promoter
(23) . orf62 and
orf51 are two small bacteriocin-like reading frames that are
part of the ComX regulon . Two cultures of the S1 strain
(OD550 = 0.35) growing at 37and 40°C were
induced to competence by addition of CSP-1, incubated for 30 min, lysed
by addition of 0.1% (vol/vol) Triton X-100, and assayed for
ß-galactosidase activity . Uninduced samples were run in
parallel . No ß-galactosidase activity was detected in the
negative controls (results not shown) . The activity measured in the
induced S1 culture grown at 40°C (153 Miller units) was
somewhat reduced compared to the activity measured in the corresponding
culture grown at 37°C (207 Miller units) . However, the
reduction does not seem large enough to explain the nearly complete
loss of competence-induced cell lysis at 40°C . It must
therefore be concluded that the observed effect is due to temperature
sensitivity of the release mechanism itself .
| FIG . 5 . Effect
of temperature on competence-induced release of cytoplasmic
ß-galactosidase from S . pneumoniae . Strain EK4166 was
induced to competence at five different temperatures by addition of 250
ng of CSP-1/ml (black columns) . Both cell-free supernatants and cell
lysates (supernatants and lysed cells) were assayed for
ß-galactosidase activity . The amount of ß-galactosidase
present in the supernatants (estimated in Miller units) is given as a
percentage of the total activity present in the cell lysates.
Corresponding uninduced samples were run in parallel as negative
controls (grey columns) . This experiment has been repeated several
times with similar
results.
| |
Together, the
various data discussed above suggested to us that LytC could be
involved in competence-induced cell lysis . We therefore decided to make
a lytC knockout mutant . An internal fragment of lytC
was cloned into the pEVP3 vector, and this construct was used to
transform strain EK100 . The pEVP3 vector contains a promoterless E.
coli lacZ reporter gene immediately downstream of the polylinker.
Transforming strain EK100 with this construct resulted in integration
of the recombinant plasmid into the lytC gene by an
insertion-duplication mechanism, giving rise to a chromosomally located
transcriptional fusion between lytC and lacZ . The
strain (H5) carrying this reporter construct was used to control the
results of a previously published microarray analysis indicating that
transcription of lytC is upregulated during competence
development (23).
Unexpectedly, our results showed that rates of transcription from the
lytC promoter remained the same in induced and uninduced
cultures, demonstrating that lytC is not a
competence-regulated gene . However, as the lacZ gene was
constitutively transcribed at a high rate, the H5 strain could be used
directly in a ß-galactosidase release assay . The results of
this assay (Fig.
6) showed that the level of ß-galactosidase released into the
growth medium when the LytC- mutant was induced to
competence was not reduced compared to the level released by the wild
type . We therefore concluded that LytC is not involved in the
competence-activated lysis
mechanism .
| FIG . 6 . Competence-induced
release of ß-galactosidase from the LytC-deficient H5 strain
during logarithmic growth . Samples were collected at different cell
densities (OD550s of 0.1 to 0.7) and induced to competence
by adding 250 ng of CSP-1/ml (black columns) . Both cell-free
supernatants and cell lysates (cells and supernatants) were assayed for
ß-galactosidase activity . The amount of ß-galactosidase
present in the supernatants (estimated in Miller units) is given as a
percentage of the total activity present in the cell lysates.
Corresponding uninduced samples were run in parallel as negative
controls (grey columns) . The presented data are representative of
results from three independent
experiments.
| |
The data presented
here and in a recent paper by Steinmoen et al.
(25) clearly show that
S . pneumoniae cells grown under laboratory conditions actively
release DNA when induced to competence . This coordination between DNA
release and uptake makes efficient gene exchange possible in a batch
culture, as demonstrated by our cocultivation experiments with
Novr and Rifr mutants of S . pneumoniae
strain Rx (Table 2 and
Fig . 4) . Since both DNA
uptake and release are controlled by the same quorum-sensing system
(ComABCDE), these processes must be coordinated also under natural
conditions . From an evolutionary perspective, this findingadds a new dimension to natural genetic transformation and makes this
phenomenon a biologically significant event . In order to better
understand how gene exchange takes place under natural conditions, it
is essential to elucidate fully the DNA release mechanism . All evidence
gathered so far indicates that DNA is released by cell lysis and not by
DNA export machinery . In the present work, we wanted to establish that
release of DNA in a competence-induced population of S.
pneumoniae takes place by autolysis . However, to our surprise we
found that competence-deficient cells (ComE-) are
lysed when cocultivated with competence-induced cells, demonstrating
that heterolysis must take place . This finding does not exclude
autolysis, but the high levels of ß-galactosidase released in
the experiments whose results are presented in Fig.
1 and
2 suggest that heterolysis
contributes substantially to the process . This made us wonder whether
the observed heterolysis is due to secretion of a lysin by the
competent cells or whether it depends on cell-to-cell contact between
competent and competence-deficient cells . We were unable to detect an
active agent in the supernatant harvested from competence-induced
S . pneumoniae cultures, indicating that heterolysis involves
lytic substances attached to the surface of competent cells . This model
is in agreement with the fact that in most experiments release is more
efficient at OD550s of 0.3 to 0.4 than at lower cell
densities . In a batch culture, cell-to-cell contact will be more
extensive at higher cell densities, leading to more-efficient lysis.
The drop in release seen at even higher cell densities
(OD550s of 0.6 to 0.7) is probably due to the loss of
competence inducibility (insensitivity to CSP-1) seen at high cell
densities (9) . Our results
show that the presence of 0.2% choline in the growth medium
almost completely abolishes competence-induced lysis without affecting
transformability . Previous studies have demonstrated that CBPs can be
eluted from the pneumococcal surface with soluble choline
(6,
8) . This suggested that a
cell wall-located CBP is involved in the observed lysis
(25) . The obvious
candidate for this role was the competence-induced amidase LytA, which
is anchored to the cell wall through a choline-binding domain
consisting of six repeats . It turned out that DNA release in a
LytA- mutant is significantly reduced, but not
abolished, compared to that in the wild type
(25) . This finding was
confirmed by the results of the ß-galactosidase release assay
shown in Fig . 3.
Consequently, an additional choline-binding murein hydrolase seems to
be involved . The pneumococcal CBP family consists of 12 members, which
include the three murein hydrolases LytA, LytB, and LytC
(8,
14) . LytB is involved in
the separation of daughter cells
(6), whereas the exact
biological role of LytC is unknown . However, LytC possesses
lysozyme-like activity with a temperature optimum of 30°C
(6,
7) . In addition, it has
been reported that transcription of the lytC gene is
upregulated during competence development
(23) . To determine
whether LytC could be the missing lysin, we cocultivated competent and
competence-deficient strains at different temperatures . The results
(Fig . 5) showed that lysis
is more efficient at temperatures around the reported optimum
temperature for LytC . To further investigate the possible role of LytC
in competence-induced cell lysis, we constructed a LytC knockout
mutant . In this mutant, a lacZ reporter gene was placed under
control of the lytC promoter . In contrast to the report by
Rimini et al . (23), we
found that the lytC gene was constitutively highly expressed,
but its rate of transcription did not increase during competence
development . In addition, no reduction in the release of
ß-galactosidase was detected (Fig.
6), demonstrating that
LytC is not involved in competence-induced cell
lysis .
Unexpectedly, the lysis mechanism works very poorly, if at
all, at 40°C (Fig.
5) . Our results indicate
that the temperature-sensitive step is downstream of comX,
since transcriptional activation of the late genes functions normally
at 40°C . Presumably, a late-gene product which constitutes a
critical part of the lysis machinery does not function at this
temperature . Another possibility is that Brownian movements, which are
more intense at 40°C, disrupt stable cell-to-cell contact,
preventing heterolysis .
Most likely, gene exchange
under natural conditions takes place in complex multispecies biofilms,
where there is close contact between individual cells . In oral
streptococci such as S . mitis and S . gordonii, this
contact is mediated by surface-exposed proteins called coaggregation
adhesins (22).
Presumably, pneumococci rely on similar surface proteins to make
contact with one another and other species in the biofilm community . To
better understand how gene exchange takes place under natural
conditions, it is important to understand exactly how DNA is released
from the donor cells and how this process is regulated . In a batch
culture, competence is triggered when the concentration of CSP-1
reaches 1 to 10 ng/ml, corresponding to about 107 cells/ml.
Within a biofilm community, diffusion of the CSP-1 peptide is probably
much more restricted and competence most likely develops among small
clusters of cells belonging to the same pherotype . Our
results suggest that competent cells in such clusters can lyse
neighboring cells by expressing cell wall-degrading enzymes such as
LytA on their surfaces . We therefore postulate that competent
streptococci actively acquire DNA by killing their neighbors . This
contrasts with the traditional view in which it is assumed that DNA
taken up by competent bacteria originates from donor bacteria that have
died and fallen apart from natural causes .
We thank Andreas Podbielski
(University Hospital Rostock, Rostock, Germany) for kindly providing
the pFW13 vector .
This work was supported by a grant from the
Research Council of
Norway .
* Corresponding
author . Mailing address: Leiv Sigve Håvarstein, Department of
Chemistry and Biotechnology, Agricultural University of Norway, P.O.
Box 5040, N-1432 Ås, Norway . Phone: 47-64949464 . Fax:
47-64947750 . E-mail:
sigve.havarstein{at}ikb.nlh.no .
- Alloing,
G., B . Martin, C . Granadel, and J . P . Claverys.1998 . Development of competence in Streptococcus
pneumoniae: pheromone autoinduction and control of quorum sensing
by the oligopeptide permease . Mol . Microbiol.
29:75-83.
- Campbell,
E . A., S . Y . Choi, and H . R . Masure.1998 . A competence regulon in Streptococcus
pneumoniae revealed by genomic analysis . Mol.
Microbiol.
27:929-939.
- Cato,
A., and W . R . Guild. 1968 . Transformation
and DNA size . I . Activity of fragments of defined size and a fit to a
random double crossover model . J . Mol . Biol.
37:157-178.
- Claverys,
J . P., A . Dintilhac, E . V . Pestova, B . Martin, and
D . A . Morrison. 1995 . Construction and
evaluation of new drug-resistance cassettes for gene disruption
mutagenesis in Streptococcus pneumoniae, using an ami
test platform . Gene
164:123-128.
- Claverys,
J . P., and L . S . Håvarstein.2002 . Extracellular peptide control of competence for
genetic transformation in Streptococcus pneumoniae.Front . Biosci.
7:d1798-d1814.
- García,
P., M . González, R . López, and J . L . Garcia.1999 . LytB, a novel pneumococcal murein hydrolase
essential for cell separation . Mol . Microbiol.
31:1275-1281.
- García,
P., M . P . González, E . García, J . L.
García, and R . López. 1999 . The
molecular characterization of the first autolytic lysozyme of
Streptococcus pneumoniae reveals evolutionary mobile domains.Mol . Microbiol.
33:128-138.
- Gosink,
K . K., E . R . Mann, C . Guglielmo, E . I.
Tuomanen, and H . R . Masure. 2000 . Role of
novel choline binding proteins in virulence of Streptococcus
pneumoniae. Infect . Immun.
68:5690-5695.
- Håvarstein,
L . S., G . Coomaraswamy, and D . A Morrison.1995 . An unmodified heptadecapeptide pheromone induces
competence for genetic transformation in Streptococcus
pneumoniae. Proc . Natl . Acad . Sci . USA
92:11140-11144.
- Håvarstein,
L . S., P . Gaustad, I . F . Nes, and D . A.
Morrison. 1996 . Identification of the streptococcal
competence pheromone receptor . Mol . Microbiol.
21:863-869.
- Håvarstein,
L . S., and D . A . Morrison. 1999.
Quorum-sensing and peptide pheromones in streptococcal competence for
genetic transformation, p . 9-26.
In G . M . Dunny and S . C . Winans (ed.),
Cell-cell signaling in bacteria . ASM Press, Washington,
D.C.
- Hui,
F . M., and D . A . Morrison. 1991.
Genetic transformation in Streptococcus pneumoniae: nucleotide
sequence analysis shows comA, a gene required for competence
induction, to be a member of the bacterial ATP-dependent transport
protein family . J . Bacteriol.
173:372-381.
- Lee,
M . S., and D . A . Morrison. 1999.
Identification of a new regulator in Streptococcus pneumoniae
linking quorum sensing to competence for genetic transformation.J . Bacteriol.
181:5004-5016.
- López,
R., M . P . González, E . García, J . L.
García, and P . García. 2000.
Biological roles of two new murein hydrolases of Streptococcus
pneumoniae representing examples of module shuffling . Res.
Microbiol.
151:437-443.
- Lou,
P., and D . A . Morrison. 2003 . Transient
association of an alternative sigma factor, ComX, with RNA polymerase
during the period of competence for genetic transformation in
Streptococcus pneumoniae. J . Bacteriol.
185:349-358.
- Morrison,
D . A., S . A . Lacks, W . R . Guild, and
J . M . Hageman. 1983 . Isolation and
characterization of three new classes of transformation-deficient
mutants of Streptococcus pneumoniae that are defective in DNA
transport and genetic recombination . J . Bacteriol.
156:281-290.
- Morrison,
D . A., M . C . Trombe, M . K . Hayden,
G . A . Waszak, and J . D . Chen.1984 . Isolation of transformation-deficient
Streptococcus pneumoniae mutants defective in control of
competence, using insertion-duplication mutagenesis with the
erythromycin resistance determinant of pAMß1 . J.
Bacteriol.
159:870-876.
- Pestova,
E . V., L . S . Håvarstein, and D . A.
Morrison. 1996 . Regulation of competence for genetic
transformation in Streptococcus pneumoniae by an autoinduced
peptide pheromone and a two component regulatory system . Mol.
Microbiol.
21:853-862.
- Pestova,
E . V., and D . A . Morrison. 1998.
Isolation and characterization of three Streptococcus
pneumoniae transformation-specific loci by use of a lacZ
reporter insertion vector . J . Bacteriol.
180:2701-2710.
- Podbielski,
A., B . Spellerberg, M . Woischnik, B . Pohl, and R . Lütticken.1996 . Novel series of plasmid vectors for gene
inactivation and expression analysis in group A streptococci (GAS).Gene
177:137-147.
- Ravin,
A . W. 1959 . Reciprocal capsular
transformations of pneumococci . J . Bacteriol.
77:296-309.
- Rickard,
A . H., P . Gilbert, N . J . High, P . E.
Kolenbrander, and P . S . Handley. 2003.
Bacterial coaggregation: an integral process in the development of
multi-species biofilms . Trends Microbiol.
11:94-100.
- Rimini,
R., B . Jansson, G . Feger, T . C . Roberts, M . de Fransesco, A.
Gozzi, F . Faggioni, E . Domenici, D . M.
Wallace, N . Frandsen, and A . Polizzi. 2000 . Global
analysis of transcription kinetics during competence development in
Streptococcus pneumoniae using high density DNA arrays.Mol . Microbiol.
36:1279-1292.
- Shoemaker,
N . B., and W . R . Guild. 1974.
Destruction of low efficiency markers is a slow process occurring at a
heteroduplex stage of transformation . Mol . Gen . Genet.
128:283-290.
- Steinmoen,
H., E . Knutsen, and L . S . Håvarstein.2002 . Induction of natural competence in Streptococcus
pneumoniae triggers lysis and DNA release from a subfraction of
the cell population . Proc . Natl . Acad . Sci . USA
99:7681-7686.
- Ween,
O., P . Gaustad, and L . S . Håvarstein.1999 . Identification of DNA binding sites for ComE, a key
regulator of natural competence in Streptococcus pneumoniae.Mol . Microbiol.
33:817-827.
Free Online Full-text Article
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
,
|