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Journal of Bacteriology, July 2004, p . 4051-4055, Vol . 186,
No . 13
Characterization of Mycobacterium smegmatis Expressing the
Mycobacterium tuberculosis Fatty Acid Synthase I (fas1) Gene
Oren Zimhony,1, *
Catherine Vilchèze,2,
and William R . Jacobs Jr.2
Unit for Infectious Diseases, Kaplan Medical Center, The School of Medicine,
Hebrew University, and Hadassah, Jerusalem, Israel,1 Department of
Microbiology and Immunology, Howard Hughes Medical Institute, Albert Einstein
College of Medicine, Bronx, New York 104612
Received 10 February 2004/ Accepted 26 March 2004
Unlike most other bacteria, mycobacteria make fatty acids with the
multidomain enzyme eukaryote-like fatty acid synthase I (FASI) .
Previous studies have demonstrated that the tuberculosis drug
pyrazinamide and 5-chloro-pyrazinamide target FASI activity .
Biochemical studies have revealed that in addition to C16:0,
Mycobacterium tuberculosis FASI synthesizes C26:0 fatty
acid, while the Mycobacterium smegmatis enzyme makes C24:0
fatty acid . In order to express M . tuberculosis FASI in a
rapidly growing Mycobacterium and to characterize the M .
tuberculosis FASI in vivo, we constructed an M . smegmatis
fas1
strain which contained the M . tuberculosis fas1 homologue . The
M . smegmatis
fas1
(attB::M . tuberculosis fas1) strain grew more slowly
than the parental M . smegmatis strain and was more susceptible
to 5-chloro-pyrazinamide . Surprisingly, while the M . smegmatis
fas1
(attB::M . tuberculosis fas1) strain produced C26:0,
it predominantly produced C24:0 . These results suggest
that the fatty acid elongation that produces C24:0 or C26:0
in vivo is due to a complex interaction among FASI, FabH, and FASII
and possibly other systems and is not solely due to FASI elongation,
as previously suggested by in vitro studies .
Mycobacterium tuberculosis infects one-third of the world's
population, and it is estimated that 1% of the world's population is
newly infected with this organism each year (31) . The
mycobacterial cell wall is a complex structure that plays a role in
both M . tuberculosis virulence and drug resistance (12,
16) . These features of the mycobacterial cell wall
are conferred by a wide variety of unique lipids that compose 60% of
the cell wall . Mycolic acids (C74 to C90
-alkyl
ß-hydroxyl fatty acids) are the major lipid components of the
mycobacterial cell wall and the hallmark of mycobacteria and related
species (16) . Long-chain saturated fatty acids,
which are precursors of cell membrane phospholipids, mycolic acids,
and other complex lipids, are generated by the type I fatty acid
synthase (FASI) in mycobacteria (4, 6,
16) . Mycobacteria are unusual among prokaryotes in that
they possess both FASI (typically found in parasites, fungi,
and all higher eukaryotes) and the type II fatty acid synthase
(FASII), which is found in most prokaryotes and plants . The
multifunctional FASI enzyme is a monomer that contains seven separate
domains with catalytic activities, including an active site for the
prosthetic group 4'-phosphopantetheine of the acyl carrier protein
(ACP) (4, 6) . Mycobacterial FASI generates C16:0
from acetyl coenzyme A (acetyl-CoA) primers and elongates the
molecules to produce C24:0/26:0 fatty acyl-CoA derivatives,
which are the precursors of other fatty acid synthases and polyketide
systems (8, 16) . In contrast, FASII
elongates the FASI products to produce meromycolate precursors, which
are modified and condensed with C24:0/26:0 to form mycolic
acids (8, 16) . In vitro studies
have shown that mycobacterial FASI produces a unique bimodal
distribution of fatty acids (15, 23) . In
addition to C16:0, C24:0 is produced by the
rapidly growing organism Mycobacterium smegmatis (23),
and C26:0 is produced by the slow growers M .
tuberculosis and Mycobacterium bovis (15) .
Since fatty acid synthesis in bacteria is essential for cell
survival, the enzymes involved in this pathway have emerged as
promising targets for antimicrobial agents (14) . The FASII
enoyl-ACP reductase was identified as the target of isoniazid
and ethionamide, which are first- and second-line tuberculosis drugs
(1), as well as a universal bacterial target for triclosan,
a consumer antimicrobial agent (13, 18-21,
28) . The fungal metabolites cerulenin and
thiolactomycin target the condensing enzymes of the bacterial FASII
pathway (10, 17, 22,
24, 25) . Two studies have shown
that 5-chloro-pyrazinamide (5-Cl-PZA) (5, 32)
and pyrazinamide (PZA) (32) inhibit M .
tuberculosis FASI, indicating that FASI is also a drug target .
The use of PZA, a FASI inhibitor, in tuberculosis chemotherapy has
greatly reduced the length of treatment necessary to cure a patient (3,
27) . Therefore, new FASI inhibitors could be useful
tools for treating tuberculosis . In order to develop a system
that allows quick purification of the large quantities of M .
tuberculosis FASI necessary for drug testing or structure-function
studies, we constructed a recombinant M . smegmatis strain in
which the native fas1 gene was deleted and replaced with the
M . tuberculosis fas1 gene . In the course of analyzing this
recombinant M . smegmatis
fasI
(attB::M . tuberculosis fas1) strain, which was
designated mc22700, we studied the in vivo elongation of C16:0
by mc22700 . The data which are presented in this paper
allowed us to challenge the concept that C16:0 elongation to
produce C24:0 in M . smegmatis or to produce C26:0
in M . tuberculosis is FASI dependent, as described previously
(4, 15, 23) .
Bacterial strains and media. The M . smegmatis strains
used in this study are described in Table 1 . The
strains were grown in Middlebrook 7H9 medium (Difco) supplemented
with 10% (vol/vol) ADS enrichment (50 g of albumin, 20 g of dextrose,
and 8.5 g of sodium chloride in 1 liter of water), 0.2% (vol/vol)
glycerol, and 0.5% (vol/vol) Tween 80 or in Mueller-Hinton broth
(Difco) supplemented with 0.5% (vol/vol) Tween 80 . The solid media
used were the media described above with 1.5% (wt/vol) agar added .
| TABLE 1 . M . smegmatis strains used in this study
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MIC determination. The MIC was determined by a broth
macrodilution test with an inoculum containing 105 CFU of
each strain per ml in either Middlebrook 7H9 or Mueller-Hinton broth .
The concentrations of 5-Cl-PZA used in these assays were 60, 40, 30,
25, 20, 10, and 5 µg/ml; a preparation containing no drug was used
as a control . The assay was terminated for each strain independently
when the optical density at 600 nm (OD600) in the no-drug tube
reached 1 to 1.2 . The MIC was defined as the first concentration
of drug which resulted in no visible growth (OD600, <0.02) .
Determination of generation time. Each strain was grown to
an OD600 of 0.5 in Middlebrook 7H9 broth as described
above and was diluted 10-fold to obtain the starting inoculum . The OD600
of each culture was determined every 120 min for 16 h . In addition,
aliquots of each culture were taken at every other time point and
plated to determine the number of CFU . The generation time was
obtained by plotting the growth curves resulting from both the OD600
and CFU values .
Transformation experiments. M . smegmatis strains
grown at 37°C to the mid-log phase (OD600,
0.7)
were washed twice with 10% cold glycerol and resuspended in cold 10%
glycerol (1 ml) . A plasmid (1.5 µl) was added to each cold cell
suspension (150 µl) to transform the strain, and the mixture was
electroporated by using the following parameters: 2.5 V, 25 µF, and
1,000
.
Middlebrook 7H9 broth (1 ml) was added to the suspension, which was
incubated at 37°C for 2 h before plating .
Deletion of M . smegmatis fasI by specialized transduction.
The allelic exchange substrate was formed by amplification of the 5'
and 3' flanking regions of M . smegmatis fas1 from M .
smegmatis genomic DNA . A 850-bp 5' flanking region from nucleotide
386 of M . smegmatis fas1 to a noncoding sequence upstream from
the fas1 start codon and a 739-bp 3' flanking region from
nucleotide 7384 of M . smegmatis to nucleotide 8123 of M .
smegmatis fas1 were amplified (GenBank accession number
AY205337) . The amplified flanking regions were cloned with a TA
cloning kit into the PCR2.1 vector (Invitrogen) for sequencing and
subsequent cloning . The substrate used for allelic exchange was
formed by cloning the 5' and 3' flanking regions of fas1
described above into pJSC285, a cloning vector containing a
bacteriophage lambda cos site, a PacI site, and a
kanamycin resistance gene flanked by resolvase sites . The allelic
exchange substrate on plasmid pYUB978 was packaged into phMSG104 (11)
to create phAE978, as previously described (2,
11) . phAE978 was used to transduce mc2155
and mc22670 (32) .
Transduction of M . smegmatis strains. M . smegmatis
bacilli were grown to an OD600 of 0.8 in Luria-Bertani
medium supplemented with 0.2% glycerol and 0.1% Tween 80 . The
cultures (10 ml) were washed twice in mycobacteriophage buffer (50 mM
Tris HCl [pH 7.6], 150 mM NaCl, 10 mM, MgCl2, 2 mM CaCl2)
to remove any traces of the Tween 80 detergent . Adsorption of
phAE978 mycobacteriophage to the washed bacilli was carried out at a
multiplicity of infection of 10, and the mixture was incubated at
37°C, the nonpermissive temperature, for 30 min . The bacilli were
pelleted, plated on Luria-Bertani medium plates containing 25 µg of
kanamycin per ml, and incubated at 37°C . Kanamycin-resistant colonies
were screened for allelic exchange by Southern blotting by using PCR
products from both M . smegmatis and M . tuberculosis fas1
as probes .
Radiolabeling of fatty acids with [1-14C]acetate and
analysis by HPLC. Cultures of M . smegmatis strains (25 ml) were
grown at 37°C to the mid-log phase (OD600,
0.8)
in Middlebrook 7H9 broth and were labeled with [1-14C]acetate
(0.3 µCi/ml) for 1 h . Cell pellets were saponified by using a 25%
methanolic KOH solution for 3 h at reflux and then acidified . The
fatty acids were extracted with chloroform and derivatized to
UV-absorbing p-bromophenacyl fatty acids (30)
by using an Alltech kit (catalog no . 18036) . The p-bromophenacyl
fatty acid esters were then analyzed by high-performance liquid
chromatography (HPLC) by using a reverse-phase C18 column,
a diode array detector, and an IN/US ß-RAM flowthrough beta-gamma
radiation detector . The elution system was CH3CN-H2O
(83/17, vol/vol) for 20 min, followed by a linear increase to 100% CH3CN
for 2 min and then 100% acetonitrile for another 16 min (flow rate, 2
ml/min) . Use of this system resulted in separation of saturated and
unsaturated fatty acids (from C12:0 to C26:0) .
The chromatogram's peaks were identified by comparison with the
chromatograms of p-bromophenacyl fatty acid ester standards (30) .
Nucleotide sequence accession number. The nucleotide
sequence of the M . smegmatis fatty acid synthase gene (fas1)
and the ACP synthase gene (acpS) have been deposited in the
GenBank database under accession number
AY205337 .
Construction of mc22700, an M . smegmatis
fas1
mutant containing the M . tuberculosis fasI homologue. Since
fatty acid synthases are essential for bacteria, we hypothesized that
fas1 is an essential gene for mycobacteria . To delete the
M . smegmatis fas1 gene, we first generated mc22670 (Table
1), an mc2155 M . smegmatis
derivative containing the M . tuberculosis fas1 gene integrated
into the attB site, by using pYUB970, a site-specific
integrating cosmid (from a genomic library of M . tuberculosis
H37Rv) bearing M . tuberculosis fas1 and its 5' and 3' flanking
regions . The native M . smegmatis fas1 gene was then deleted by
specialized transduction (2) . The allelic exchange
substrate was formed by amplification of the 5' and 3' flanking
regions of M . smegmatis fas1 from M . smegmatis genomic
DNA . Kanamycin-resistant (Kanr) transductants were observed
for mc22670 but not for wild-type strain mc2155;
these results were the results expected for an essential gene that
was found to be a drug target (5, 32) .
Kanr colonies were screened for allelic exchange by
Southern blotting by using PCR products from both M . smegmatis
and M . tuberculosis fas1 as probes . The Kanr
colonies were found to contain a shifted band that was consistent
with allelic exchange with a
fas1
Kanr construct, as shown in Fig . 1; this
confirmed construction of mc22700, an M . smegmatis
strain expressing M . tuberculosis fas1 (Table 1) .
|
FIG . 1 . Allelic exchange in mc22670, a fas1
merodiploid strain of M . smegmatis, results in mc22700,
an M . smegmatis strain bearing M . tuberculosis fas1 . (A)
Map of the fas1 genomic region of wild-type and mutant strains of
M . smegmatis (following allelic exchange) and wild-type M .
tuberculosis fas1, showing AflIII sites . (B) Southern blot of
AflIII-digested genomic DNA from different strains probed with the
fragments shown in panel A . Mtb, M . tuberculosis; Msmg,
M . smegmatis.
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The ability to exchange M . smegmatis FASI for the M . tuberculosis
homologue provided an improved expression system with a rapidly
growing, nonpathogenic mycobacterium strain . Moreover, it has been
shown previously that M . smegmatis, unlike M . tuberculosis
and M . bovis BCG, tolerates multiple copies of M . tuberculosis
fas1 (32) . Thus, overexpression of M .
tuberculosis FASI under different promoters is feasible in M .
smegmatis and could be followed by allelic exchange of the M .
smegmatis fas1 gene by using the transduction system which we
developed, as shown by the formation of strain mc22700 .
Growth characteristics and 5-Cl-PZA susceptibility of mc22700.
Strain mc22700 differs from the parental M smegmatis strains
in several interesting properties . First, mc22700 was found
to have a longer generation time (250 min in broth, compared to
210 min for wild-type strain mc2155 or mc22670) . The
generation time was determined by measuring the OD600 and
counting the actual CFU during exponential growth in Middlebrook 7H9
medium and then plotting the resulting growth curves . The slow-growth
phenomenon was independent of the medium used . A lower growth
rate was also observed in solid media, as single colonies of mc22700
were visualized 16 h later than single colonies of mc2155
or mc22670 were visualized .
We compared the susceptibilities of wild-type strain mc2155,
strain mc22670, and strain mc22700 to 5-Cl-PZA .
Previously, FASI was identified as a potential drug target for
5-Cl-PZA in M . tuberculosis (32) . Another
study confirmed that 5-Cl-PZA inhibits mycobacterial FASI (5) .
The MIC of 5-Cl-PZA were 10 µg/ml for the mc22700 strain
and 25 µg/ml for mc2155 and mc22670, as
previously described (32) . The increased susceptibility
of mc22700 to 5-Cl-PZA is consistent with the previous finding
that M . tuberculosis is more susceptible to 5-Cl-PZA than M .
smegmatis (9, 32) . This finding
complements the results of a previous study in which the effect of a
multicopy fas1 gene on 5-Cl-PZA resistance was described (32) .
Multiple copies of M . tuberculosis fas1 conferred only modest
resistance to 5-Cl-PZA in M . smegmatis (there was 2.5-fold
increase in the MIC), while a single copy of M . tuberculosis fas1
(mc22670) did not confer 5-Cl-PZA resistance in M .
smegmatis . In contrast, for a diploid strain containing one extra
copy of M . smegmatis fas1, the MIC of this drug was fivefold
greater (32) . Taken together, these results show
that M . tuberculosis is more susceptible to 5-Cl-PZA than
M . smegmatis . Furthermore, the MICs of cerulenin, a FASI (and
possibly FASII) inhibitor (22), and isoniazid, a FASII
inhibitor (1, 29, 30),
were the same for mc22700 and the parental M . smegmatis
strains .
mc22700, unlike mc2155, produces C26:0
fatty acid, but C24:0 is still the predominant end product.
Previous biochemical studies showed that purified FASI of M .
smegmatis produces C16:0/C24:0, whereas purified FASI
from M . tuberculosis or M . bovis BCG produces C16:0/C26:0
(15, 23) . To test the activity
of M . tuberculosis FASI in synthesizing C16-C24:0/C26:0
fatty acids in vivo, we monitored [1-14C]acetate
incorporation into lipids in wild-type strain mc2155, strain
mc22670 (M . smegmatis [attB::M .
tuberculosis fas1]), and mc22700 (M .
smegmatis
fas1
[attB::M . tuberculosis fas1]) . This experiment was
repeated three times, and the results of a typical experiment are
shown in Table 2 and Fig . 2 .
| TABLE 2 . Percentages of saturated fatty acids (C16 to C26)
in mc2155, mc22670, and mc22700a
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FIG . 2 . HPLC analysis of 1-14C-labeled fatty acids extracted
from mc2155 and mc22700 after labeling with [1-14C]acetate
for 30 min . The retention times (t) for the p-bromophenacyl fatty
acid esters under the elution conditions described previously (30)
are as follows: C14:0, 10.5 min; C16:0, 17.8 min;
C18:1, 18.9 min; C18:0, 23.8 min; C20:0,
25.3 min; C22:1, 26.5 min (peak a); C22:0, 27.3
min; C24:0, 29.9 min; C26:1,31.6 min (peak b); and
C26:0, 33.6 min.
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We found that the characteristic C16:0-C24:0 fatty acid
bimodal distribution in M . smegmatis was similar for wild-type
strain mc2155 and the merodiploid fas1 strain mc22670
(Fig . 2) . Surprisingly, the characteristic end
product of M . tuberculosis FASI, C26:0, was not
detected in mc22670, the strain containing both M .
smegmatis fas1 and M . tuberculosis fas1 . In contrast, mc22700
produced both C24:0 and C26:0 . However, C24:0
was more abundant than C26:0 in this strain (Table
2 and Fig . 2) despite the deletion
of M . smegmatis fas1 and replacement of this gene by M .
tuberculosis fas1 . The similarity of the fatty acid profiles of
the merodiploid strain of M . smegmatis and the wild-type M .
smegmatis strain is compatible with the dominance of M .
smegmatis fas1 in the host strain over M . tuberculosis fas1.
The production of larger amounts of C24:0 than of C26:0
in mc22700 was unexpected since in vitro studies of
M . smegmatis and M . bovis BCG FASI demonstrated that
M . smegmatis synthesizes C24:0 and M . bovis BCG
synthesizes C26:0 (15,
23) . Since the M . tuberculosis fas1 gene replaced M .
smegmatis fas1 in mc22700, it was predicted that this
strain would have a fatty acid profile similar to that of M .
tuberculosis or M . bovis BCG strains . The presence of
larger amounts of C24:0 than of C26:0 despite
the deletion of M . smegmatis fas1 suggests that C16:0
elongation in vivo is not solely determined by FASI activity, as
previously shown by in vitro studies in which purified FASI was used
(15, 23) .
Unlike the predominant synthesis of C24:0 over C26:0 in
mc22700, the C18:0/C16:0 ratio was a
direct result of the replacement of M . smegmatis fas1 by M .
tuberculosis fas1 (Table 2) . Introducing M .
tuberculosis fas1 into a mycobacterial strain increased the
amount of C18:0 synthesized by the strain . The C18:0/C16:0
ratios were found to be 0.16 for wild-type M . smegmatis, 0.29
for mc22670, and 0.93 for mc22700 .
Previous in vivo studies of M . smegmatis, M . bovis BCG,
and M . tuberculosis showed that the C18:0/C16:0
ratios were 0.17 for M . smegmatis (30) and 0.6
to 1 for either M . bovis BCG (30) or M .
tuberculosis (32) . In vitro studies of FASI
activity have shown that M . bovis BCG FASI produces more C18:0
than C16:0 (15), while M . smegmatis FASI
produces more C16:0 than C18:0 (23) .
Thus, our in vivo results for recombinant strain mc22700
confirmed the previous finding that M . tuberculosis FASI
generates more C18:0 than M . smegmatis FASI generates .
The profiles of C16:0-C24:0/26:0 synthesis are different
for the wild-type strain of M . smegmatis and strain mc22700 .
In these strains, the only variable was the FASI system (M .
smegmatis fas1 in mc2155 and M . tuberculosis fas1
in mc22700) . The observation that mc22700 and
mc2155 synthesize C26:0 and C24:0,
respectively, and the observation that replacement of the M .
smegmatis fas1 gene by the M . tuberculosis homologue in
M . smegmatis does not result in the C16:0/C26:0
bimodal fatty acid profile observed in vitro (15)
suggest that this fatty acid profile is determined not only by FASI
but also by the interaction of FASI with FASII . Previous studies with
M . tuberculosis FabH, a ß-ketoacyl synthase that uses acyl-CoA
as its substrate, suggested that this enzymatic system acts as an
interface between the type I and type II fatty acid synthase systems
by funneling acyl-CoA formed by the FASI system into the FASII
elongating acyl-ACP primers (7) . We hypothesize
that the differences in the fatty acid profiles of mycobacterial
species are due to FASI interactions with FabH and FASII . Further
studies of fabH systems in M . smegmatis may delineate
the differences in the fatty acid profiles of M . smegmatis and
M . tuberculosis. Moreover, the origin of FASI (M . smegmatis
or M . tuberculosis) seems to play an important role in the
amount of C18:0 produced by a strain . The C18:0/C16:0
ratio found for mc22700 is similar to the ratio found
for M . tuberculosis strains, while the C18:0/C16:0
ratio found for mc22670 is only reminiscent of
M . tuberculosis FASI activity in the fas1 merodiploid
strain .
M . tuberculosis FASI is an essential enzyme and is unique among
bacterial species, and therefore it is an attractive drug target .
The ability to express M . tuberculosis fas1 in M . smegmatis
should provide a relatively rapid purification system for M .
tuberculosis FASI, as previously described (4,
5, 15), without dependence on
expression of the enzyme in Escherichia coli (which has been
unsuccessful so far) . Moreover, it has been shown previously that
M . smegmatis, unlike M . tuberculosis and M . bovis BCG,
tolerates multiple copies of M . tuberculosis fas1 (32) .
Repeated attempts to transform the slowly growing mycobacteria M .
bovis BCG and M . tuberculosis with multiple copies of
fas1 yielded no colonies, while M . smegmatis was readily
transformed with multiple copies of fas1 (32) .
Thus, M . smegmatis is an optimal bacterial system for
overexpression of M . tuberculosis FASI . The specialized
transduction system for M . smegmatis fas1 described here
should allow us to replace M . smegmatis FASI with overexpressed
M . tuberculosis FASI under different promoters, which should
facilitate large-scale purification . Although the FASI proteins
from M . tuberculosis and M . smegmatis exhibit 90% homology,
it is preferable to study the FASI protein from the pathogenic
organism M . tuberculosis, especially if structure-function studies
leading to rationale drug design for M . tuberculosis FASI
inhibitors are planned . M . tuberculosis FASI studies should
lead to development of new analogs of PZA and new classes of
effective FASI inhibitors . In addition, the concern about emergence
of drug resistance when universal bacterial sites are targeted should
be eliminated as the FASI site is a unique site in bacteria . Improved
agents that exhibit activity against mycobacterial FASI may provide
new options for treating M . bovis, Mycobacterium avium, and
drug-resistant M . tuberculosis infections .
We thank Jeff Cox for providing plasmid pJSC285 .
This work was supported by grant AI43268 from the NIH .
* Corresponding author . Mailing address: Unit for Infectious
Diseases, Kaplan Medical Center, The School of Medicine, Hebrew University, and
Hadassah, Rehovot 76100, Israel . Phone: 972-9441993 . Fax: 972-8-9441866 . E-mail: Oren_z@clalit.org.il .
O.Z . and C.V . contributed equally to this work .
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