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Journal of Bacteriology, July 2004, p . 4395-4398, Vol . 186,
No . 13
Characterization of Tn916S, a Tn916-Like Element Containing the
Tetracycline Resistance Determinant tet(S)
Holli Lancaster,1 Adam P . Roberts,1 Raman Bedi,2
Michael Wilson,1 and Peter Mullany1*
Division of Infection and Immunity, Eastman Dental Institute for Oral Health
Care Sciences, University College London, London WC1X 8LD,1
Department of Health, London SE1 8UG, United Kingdom2
Received 26 January 2004/ Accepted 23 March 2004
We have characterized a transferable tetracycline resistance (Tcr)
element from a Streptococcus intermedius isolate . The gene
responsible for this resistance was identified by PCR and Southern
hybridization as tet(S) . Furthermore, the genetic support for
this determinant was shown to be a conjugative transposon closely
related to Tn916 . This element has been designated Tn916S .
Tetracycline-resistant streptococci are frequently isolated from the
oral cavity of humans (13), and resistance is most
commonly conferred by Tet(M), a ribosomal protection protein often
associated with the conjugative transposon (cTn) Tn916 (4) .
Tn916 belongs to a family of cTns that are composed of
functional modules (10, 12) involved in
conjugation, antibiotic resistance, regulation, and integration and
excision . Different members of this family of cTns are comprised of
different modules .
The Tcr determinant tet(S) encodes a ribosomal protection
protein showing 79% amino acid identity with Tet(M) . It was initially
identified in a multiresistant Listeria monocytogenes strain
on a 37-kb conjugative plasmid, pIP811 (2) . Subsequently
tet(S) has been found on plasmid pK214 from Lactococcus
lactis (8) and in the chromosome of
Enterococcus faecalis (3) . The tet(S)
gene in L . lactis and L . monocytogenes is linked to homologues
of the Tn916 orf6, orf9, and orf7 . In this work, we
show that the tet(S) gene from a Streptococcus intermedius
isolate, originally isolated from a 5-year-old human child, is
contained within a functional Tn916-like element .
All chemicals were purchased from BDH (Poole, United Kingdom) .
Antibiotics were purchased from Sigma-Aldrich (Poole, United Kingdom)
and used at concentrations of 8 µg/ml for tetracycline and 25 µg/ml
for rifampin . All enzymes were purchased from Promega (Southampton,
United Kingdom), and all growth media were purchased from Oxoid
(Basingstoke, United Kingdom) . All bacterial strains and plasmids
used are shown in Table 1 . The primers used are
shown in Table 2 . The S . intermedius strain
15.3T.2 was grown on Iso-Sensitest agar containing 5% defibrinated
horse blood (E&O Laboratories, Bonneybridge, United Kingdom) and
tetracycline at 37°C in an anaerobic cabinet (Don Whitley Scientific
Ltd., Shipley, United Kingdom) containing a mixture of 80% nitrogen,
10% hydrogen, and 10% carbon dioxide . All other strains were grown
aerobically at 37°C . The filter-mating recipients E . faecalis
and Streptococcus spp . were grown in brain heart infusion
broth .
| TABLE 1 . Bacterial strains and plasmids used throughout this study
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| TABLE 2 . Oligonucleotide primers used in this study
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Filter-mating experiments were carried out as previously described (14) .
Transconjugants were selected on brain heart infusion agar,
containing 5% horse blood, rifampin, and tetracycline at 4 µg/ml .
Spontaneous mutations to rifampin resistance in the donor were not
detected . The streptococcal transconjugants were also subcultured
onto esculin agar to confirm that they were negative for hydrolysis,
in order to distinguish them from the donor, which was positive .
S . intermedius 15.3T.2 was grown overnight, and genomic DNA
was extracted with the Yeast and Gram Positive Bacteria Genomic DNA
kit (Genetra, Minneapolis, Minn., supplied through Flowgen) according
to the manufacturer's instructions . PCR for the detection of a
variety of Tcr genes was carried out as described by Ng et
al . (7) and Villedieu et al . (13) . Positive
PCR products were sequenced with the Big Dye Terminator ready
reaction mixture (PE Biosystems, Warrington, United Kingdom) and an
ABI310 genetic analyzer (PE Biosystems) or sent to Oswel Sequencing
(Romsey, United Kingdom) .
Southern blotting and hybridization were carried out with an ECL
Direct Nucleic Acid Labeling and Detection system (Amersham
Biosciences, Little Chalfont, United Kingdom) . Southern blots were
probed with pAM120 (Table 1) and PCR products derived from
tet(S), tet(M), and the int and xis genes of
Tn916 (Table 1) . PCR assays were also
carried out as previously described by Wang et al . (15)
to detect all regions of Tn916 . The region between orf13
and orf6 (RT1 to RT4 on Fig . 1) was sequenced
in triplicate .
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FIG . 1 . (A) Predicted schematic of Tn916S based on the structure
of Tn916 . Shown are the positions and names of primers (solid
triangles) used to amplify the amplicons shown in panel B below . The
origins and sequences of the primers are given in Table 1 .
The last line represents the scale in kilobases . (B) Amplicons from
S . intermedius 15.3T.2, the E . faecalis transconjugant, and
BS34A (contains Tn916) . Lanes: 1, lambda BstEII molecular marker;
2, primers 1 and 2; 3, primers 3 and 4; 4, primers 5 and 6; 5, primers 7
and 8; 6, primers 9 and 10; 7, primers 11 and 12; 8, primers 13 and 14;
9, primers 15 and 16; 10, primers 17 and 18; 11, primers 19 and 20; 12,
primers 21 and 22; 13, primers 23 and 24; 14, primers 25 and 26; 15,
primers RT1 and SFW; 16, primers RT4 and SRV [reactions 15 and 16 should
be negative for BS34A, as this strain does not contain tet(S)];
17, primers RT1 and RT4; 18, primers RT7 and RT14; 19, primers RT13 and
RT15; 20, primers RT18 and intxis2; 21, primers intxis1 and intxis2; and
22, primers REO and LEO (a, this primer pair amplifies the
circular form of the element).
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Tcr from the S . intermedius 15.3T.2 donor was transferable to
E . faecalis JH2-2, S . sobrinus, and S . sanguinis at
frequencies of 4.5 x 10–7,
2.5 x 10–7, and 1.0
x 10–5 per donor, respectively .
PCR amplifications specific for tet(S) on S . intermedius
15.3T.2 and transconjugant genomic DNA demonstrated that tet(S)
was present . No other Tcr genes could be amplified . No
tet genes could be detected in the recipients . PCRs for the
entire length of Tn916 were carried out on S . intermedius 15.3T.2,
the E . faecalis transconjugant, and the E . faecalis JH2-2
recipient . S . intermedius 15.3T.2 and the transconjugant had
PCR amplicons [with the exception of the tet(M)-containing
amplicon] the same size as the positive control of Bacillus
subtilis BS34A (which contains a single copy of Tn916),
indicating that Tn916S has the same genetic organization as Tn916 .
The PCR assay on the recipient (E . faecalis JH2-2) yielded no
amplicons . The sequence data of the region between RT1 and RT4 (Fig.
1A) showed that tet(S) has effectively
replaced tet(M) with the upstream region lacking repeat
regions that are involved in transcriptional control in Tn916 .
DNA from the parents and one of the transconjugants was subjected
to Southern blot analysis (Fig . 2) . HindIII digests were
probed with tet(S), and two hybridizing fragments were
observed . As there is one HindIII site in the tet(S) gene, the
two hybridizing fragments are likely to be Tn916S-genome
junction regions . A single HincII fragment is seen in both the donor
and transconjugant, which corresponds to an internal fragment (9) .
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FIG . 2 . Southern blot analysis of DNA from parents and transconjugants
containing Tn916S . Lanes 3 to 7 contained HindIII-digested
genomic DNA, and lanes 9 to 13 contained HincII-digested genomic DNA .
Lanes: 1, lambda BstEII molecular marker; 2, blank; 3, S . intermedius
15.3T.2; 4, E . faecalis transconjugant; 5, Escherichia coli
pAT451; 6, B . subtilis BS34A; 7, E . faecalis JH2-2; 8,
blank; 9, S . intermedius 15.3T.2; 10, E . faecalis
transconjugant; 11, tet(S)-positive strain; 12, B . subtilis
BS34A; and 13, E . faecalis JH2-2.
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When probed with int/xis, two HindIII fragments are observed
in the donor and three are observed in the transconjugant . As
this probe should hybridize to one junction fragment within Tn916S,
this means either that there are two copies of the element in the
donor and three in the transconjugant or that there is another
int/xis-containing genetic element in the donor that may have
transferred to the recipient . We prefer the latter explanation, as
the 4.8-kb hybridizing HindIII fragment with the int/xis probe
is the same size as one of the fragments when tet(S) is used
as the probe, indicating that the tet(S) gene and one of the
int/xis regions are linked . When pAM120 is used to probe the
blots, HincII digestion shows similar hybridizing fragments, as would
be expected from DNA containing an integrated copy of Tn916
but with the extra HincII fragment (see above) .
When the blots were probed with tet(M), there was no hybridization
(data not shown) . Taken together, these data indicate the donor
strain contains at least two mobile elements containing xis
and int, one of which contains tet(S) . Both are capable of
transfer to the recipient .
The finding of tet(S) in the same relative position as tet(M)
in a broad-host-range Tn916-related element supports the view
that conjugative transposons are composed of modules that are
able to exchange with modules from other elements (10,
12), possibly by homologous recombination . It now
seems apparent that not only is Tn916 involved in the
dissemination of tet(M), it is also involved in the
dissemination of tet(S) .
Nucleotide sequence accession number. The sequence of the
region between orf13 and orf6 has been deposited in
GenBank under accession no.
AY534326 .
This work was supported by the Wolfson Trust .
* Corresponding author . Mailing address: Division of Infection
and Immunity, Eastman Dental Institute for Oral Health Care Sciences, University
College London, 256 Gray's Inn Rd., London WC1X 8LD, United Kingdom . Phone: 020
7915 1050 . Fax: 020 7915 1127 . E-mail: pmullany@eastman.ucl.ac.uk.
- Aminov, R . I., N . Garrigues-Jeanjean, and R . I . Mackie.
2001 . Molecular ecology of tetracycline resistance: development and validation
of primers for detection of tetracycline resistance genes encoding ribosomal
protection proteins . Appl . Environ . Microbiol . 67:22-32 .
- Charpentier, E., G . Gerbaud, and P . Courvalin. 1993 .
Characterization of a new class of tetracycline-resistance gene tet(S)
in Listeria monocytogenes BM4210 . Gene 131:27-34.
- Charpentier, E., G . Gerbaud, and P . Courvalin. 1994 .
Presence of the Listeria tetracycline resistance gene tet(S) in
Enterococcus faecalis . Antimicrob . Agents Chemother . 38:2330-2335.
- Flannagan, S . E., L . A . Zitzow, Y . A . Su, and D . B . Clewell.
1994 . Nucleotide sequence of the 18-kb conjugative transposon Tn916
from Enterococcus faecalis . Plasmid 32:350-354.
- Gawron-Burke, C., and D . B . Clewell. 1984 . Regeneration
of insertionally inactivated streptococcal DNA fragments after excision of
transposon Tn916 in Escherichia coli: strategy for targeting and
cloning of genes from gram-positive bacteria . J . Bacteriol . 159:214-221.
- Marra, D., and J . R . Scott. 1999 . Regulation of excision
of the conjugative transposon Tn916 . Mol . Microbiol . 31:609-621.
- Ng, L . K., I . Martin, M . Alfa, and M . Mulvey. 2001 .
Multiplex PCR for the detection of tetracycline resistant genes . Mol . Cell
Probes 15:209-215.
- Perreten, V., F . Schwarz, L . Cresta, M . Boeglin, G . Dasen,
and M . Teuber. 1997 . Antibiotic resistance spread in food . Nature 389:801-802.
- Roberts, A . P., G . Cheah, D . Ready, J . Pratten, M . Wilson,
and P . Mullany. 2001 . Transfer of Tn916-like elements in microcosm
dental plaques . Antimicrob . Agents Chemother . 45:2943-2946 .
- Roberts, A . P., P . A . Johanesen, D . Lyras, P . Mullany, and
J . I . Rood. 2001 . Comparison of Tn5397 from Clostridium
difficile, Tn916 from Enterococcus faecalis and the CW459tet(M)
element from Clostridium perfringens shows that they have similar
conjugation regions but different insertion and excision modules . Microbiology
147:1243-1251 .
- Roberts, A . P., C . Hennequin, M . Elmore, A . Collignon, T .
Karjalainen, N . Minton, and P . Mullany. 2003 . Development of an
integrative vector for the expression of antisense RNA in Clostridium
difficile . J . Microbiol . Methods 55:617-624.
- Toussaint, A., and C . Merlin. 2002 . Mobile elements as a
combination of functional modules . Plasmid 47:26-35.
- Villedieu, A., M . L . Diaz-Torres, N . Hunt, R . McNab, D . A .
Spratt, M . Wilson, and P . Mullany. 2003 . Prevalence of tetracycline
resistance genes in oral bacteria . Antimicrob . Agents Chemother . 47:878-882 .
- Wang, H., A . P . Roberts, D . Lyras, J . I . Rood, M . Wilks, and
P . Mullany. 2000 . Characterization of the ends and target sites of the
novel conjugative transposon Tn5397 from Clostridium difficile:
excision and circularization is mediated by the large resolvase, TndX . J .
Bacteriol . 182:3775-3783 .
- Wang, H., A . P . Roberts, and P . Mullany. 2000 . DNA
sequence of the insertional hot spot of Tn916 in the Clostridium
difficile genome and discovery of a Tn916-like element in an
environmental isolate integrated in the same hot spot . FEMS Microbiol . Lett.
192:15-20.
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