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Journal of Bacteriology, July 2004, p . 4110-4123, Vol . 186,
No . 13
The
YopD Translocator of Yersinia pseudotuberculosis Is a Multifunctional
Protein Comprised of Discrete Domains
Jan Olsson,1,
Petra J . Edqvist,1,
Jeanette E . Bröms,1,2,
Åke Forsberg,1,2 Hans Wolf-Watz,1 and Matthew S . Francis1*
Department of Molecular Biology, Umeå University, SE-901 87 Umeå,1
Department of Medical Countermeasures, Swedish Defence Research Agency, Division
of NBC-Defence, SE-901 82 Umeå, Sweden2
Received 19 January 2004/ Accepted 25 March 2004
To establish an infection, Yersinia pseudotuberculosis utilizes
a plasmid-encoded type III translocon to microinject several
anti-host Yop effectors into the cytosol of target eukaryotic cells .
YopD has been implicated in several key steps during Yop effector
translocation, including maintenance of yop regulatory control
and pore formation in the target cell membrane through which
effectors traverse . These functions are mediated, in part, by an
interaction with the cognate chaperone, LcrH . To gain insight into
the complex molecular mechanisms of YopD function, we performed a
systematic mutagenesis study to search for discrete functional
domains . We highlighted amino acids beyond the first three N-terminal
residues that are dispensable for YopD secretion and confirmed that
an interaction between YopD and LcrH is essential for maintenance of
yop regulatory control . In addition, discrete domains within
YopD that are essential for both pore formation and translocation of
Yop effectors were identified . Significantly, other domains were
found to be important for effector microinjection but not for pore
formation . Therefore, YopD is clearly essential for several discrete
steps during efficient Yop effector translocation . Recognition of
this modular YopD domain structure provides important insights into
the function of YopD .
The ability to infect an animal or plant host is a feature common to
many pathogens . Several of these pathogens utilize functionally
homologous type III secretion systems (TTSSs) to translocate antihost
effector proteins into target host cells (15,
36, 53) . Pathogenic Yersinia spp .
contain a
70-kb
virulence plasmid sufficient for establishing a TTSS (23,
30, 46, 66) . The type
III needle complex is comprised of numerous Ysc (Yersinia
secretion) components, which upon target cell contact
secrete two classes of Yop proteins (Yersinia
outer proteins), antihost effector proteins and proteins
required for efficient translocation into target cells (14) .
The translocated proteins aid in bacterial colonization by subverting
host cell signaling, which enables bacteria to resist phagocytosis
and compromise immune surveillance (1, 17) .
Induction of Yops by target cell contact (45,
49) can be mimicked in vitro by growing bacteria
at 37°C in the absence of calcium (low-calcium response) (14) .
Regulatory control of the TTSS is established by a positive and
negative control loop that involves the AraC-like activator LcrF
(also termed VirF) (12, 68) and
the negative regulatory element LcrQ (also termed YscM) (45,
47, 57), respectively . Type III-dependent
secretion of LcrQ appears to derepress yop transcription (45,
47) through a mechanism that requires another
negative regulator, YopD (65) . While a
yopD
null mutant is growth restricted at 37°C and Yop synthesis is
constitutively induced in vitro (22, 65),
the presence of LcrQ in the bacterial cytoplasm of a
yopD
null mutant does not repress this constitutive Yop synthesis (65) .
As YopD stability is dependent on the cytosolic cognate chaperone
LcrH (also termed SycD) (20, 64),
it follows that a YopD-LcrH complex, which may also include LcrQ (11),
is essential for maintaining yop regulatory control (2,
21) . These data are consistent with the recent
notion that YopD, not LcrQ, is the molecular switch that controls
feedback inhibition of the TTSS (67) .
In addition, secreted YopD is essential for effector translocation
(22, 28, 48) . Together
with YopB and LcrV, YopD apparently participates in forming a pore
complex in the plasma membrane through which effector translocation
occurs (10, 26, 32,
41, 61) . However, YopD may
associate with pores only transiently, since a portion of YopD
localizes to the cytosol of infected cell monolayers (22) .
The observations that support the hypothesis that YopD plays a
role at several steps of the translocation process are intriguing .
However, it is difficult to conceptualize how YopD actually
integrates these multiple activities . As there are homologues of this
protein in other TTSSs (6, 8,
36), understanding the mechanism of YopD function would
significantly increase our understanding of type III secretion . Until
now, this has been impeded by the inability to investigate the
functions of YopD in isolation from each other . In this study, we
systematically mutagenized YopD . Analyses of the mutants verified
that YopD is a multifunctional protein involved in several key steps
that are necessary for efficient Yop effector translocation . In
particular, discrete functional domains were isolated that enabled
the role of YopD in translocation to be separated from its role in
pore formation and regulation . The mosaic-like structure of YopD
is likely to facilitate coordination of the multiple functions .
Bacterial strains, plasmids, and growth conditions. Bacterial
strains and plasmids used in this study are listed in Table
1 . Unless indicated otherwise, bacteria were routinely
cultivated in Luria-Bertani agar or broth at either 26°C (Yersinia
pseudotuberculosis) or 37°C (Escherichia coli) with
aeration . When required, appropriate antibiotics were added at the
following final concentrations: carbenicillin, 100 µg per ml;
kanamycin, 50 µg per ml; gentamicin, 20 µg per ml; spectinomycin, 20
µg per ml; and chloramphenicol, 25 µg per ml .
| TABLE 1 . Bacterial strains and plasmids used in this study
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Recombinant DNA techniques, enzymes, and reagents. Chemical
transformation in E . coli was performed by the method of
Hanahan (27) . Plasmid DNA was purified from E . coli
with a Quantum Prep miniprep kit (Bio-Rad Laboratories AB,
Sundbyberg, Sweden) or with a Jetstar 2.0 plasmid midi kit (Genomed,
Bad Oeynhausen, Germany) as described by the manufacturer . Standard
DNA manipulation techniques were performed essentially as described
elsewhere (51) . DNA fragments were recovered from
agarose by spin column purification performed as described by the
manufacturer (Amicon, Beverly, Mass.) . All modifying enzymes were
purchased from either Roche Diagnostics Scandinavia (Bromma, Sweden)
or New England Biolabs (Beverly, Mass.) . The DyNAzyme EXT DNA
polymerase used for PCR amplification was purchased from Finnzymes
(Espoo, Finland), oligonucleotides were purchased from DNA Technology
A/S (Aarhus, Denmark), and deoxynucleoside triphosphates were
purchased from Amersham Biosciences Europe GmbH (Uppsala, Sweden) .
Construction of sequential in-frame
yopD
deletion mutants. Amplified DNA fragments used for constructing the
in-frame deletion mutations were generated by overlapping PCR (35) .
The primer combinations used to create the in-frame yopD
deletion mutants are listed in Table 2 . Each
fragment containing a sequence flanking the specific yopD
deletion was confirmed by sequence analysis by using a DYEnamic ET
terminator cycle sequencing kit (Amersham Biosciences); this was
facilitated by initial cloning into the pCR4-TOPO TA cloning vector
(Invitrogen AB, Stockholm, Sweden) . The fragments were then cloned
into XhoI- (or SpeI-) and XbaI-digested suicide mutagenesis vector
pDM4 (40) . E . coli S17-1 pir
was used as the donor strain in conjugal mating experiments with
Y . pseudotuberculosis . For selection for the appropriate allelic
exchange events we used established methods (40) .
TABLE 2 . Oligonucleotides used for construction of
yopD
deletions
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Protein stability. Protein stability in the presence of
endogenous proteases was analyzed after growth in defined TMH medium
as described previously (20) . In parallel,
intrabacterial protein stability was also assessed by the method of
Feldman and colleagues (18) for translocation-deficient
yopD
mutant alleles only . Protein fractions were analyzed by sodium
dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) and
were transferred to a nitrocellulose membrane (Scheicher and Schuell,
Dassel, Germany) by using a Hoefer SemiPhor semidry transfer unit
(Amersham Biosciences) . Membrane-bound YopD was detected by using
rabbit anti-YopD polyclonal antiserum, followed by horseradish
peroxidase-conjugated anti-rabbit antibodies (Amersham Biosciences)
prior to detection with the enhanced chemiluminescence system (ECL)
used as directed by the manufacturer (Amersham Biosciences) .
Limited chymotrypsin digestion. Overnight cultures of
translocation-deficient YopD mutants were diluted to an optical
density at 600 nm of 0.2 in 10 ml of fresh culture medium
(Luria-Bertani broth supplemented with 5 mM EGTA and 20 mM MgCl2) .
Bacteria were grown for 1 h at 26°C and then incubated at 37°C for 3
h . Cultures were centrifuged at 2,500 x
g, and the supernatants containing secreted proteins were
collected and passed through a 0.45-µm-pore-size sterile filter . CaCl2
was added to a final concentration of 20 mM, and the tubes were
placed on ice for 20 min . Each sample was divided into two 5-ml
portions by transfer into new tubes . To one tube, chymotrypsin (Roche
Diagnostics) was added to a final concentration of 10 µg per ml,
while the other tube was treated as a control for spontaneous
proteolysis . The tubes were incubated on ice for 30 min, and then
proteinase activity was quenched and proteins were precipitated on
ice for 1 h by addition of 0.1 volume of trichloroacetic acid . After
centrifugation for 10 min at 2,500 x
g, the supernatants were carefully removed by aspiration . Each
remaining precipitate was dissolved in 50 µl of 2x
protein sample buffer (100 mM Tris-HCl [pH 6.8], 4% SDS, 0.001%
bromophenol blue, 10% glycerol, 2% ß-mercaptoethanol) and
fractionated by SDS-PAGE by using 15% Tris-Tricine gels . Standard
immunoblotting procedures were used to detect YopD peptides with
polyclonal rabbit anti-YopD antiserum .
Growth phenotypes and the MOX test. Yersinia plating
frequencies and the subsequent growth phenotypes when the organisms
were grown under high- and low-Ca2+ conditions at 37°C
were determined by using the MOX test (5, 23) .
Briefly, wild-type Yersinia (YPIII/pIB102) was unable to grow
on LA (Luria-Bertani broth supplemented with 2% agar) supplemented
with magnesium oxalate (in the absence of Ca2+) at 37°C,
and normal growth occurred on LA with 2.5 mM CaCl2; this
phenotype was termed calcium dependent (CD) . The
yopD
null mutant (YPIII/pIB621) was unable to grow at 37°C irrespective of
the Ca2+ level (temperature sensitive [TS] phenotype) . For
confirmation, we performed parallel experiments in which the growth
phenotypes were determined at 37°C during logarithmic growth of
bacteria in liquid TMH medium (lacking Ca2+) or medium
supplemented with 2.5 mM CaCl2 (21) .
Analysis of Yop synthesis and secretion. Yop synthesis and
secretion were induced as previously described (20-22) .
Briefly, total Yop levels were assessed by obtaining samples directly
from the bacterial culture suspension, which contained a mixture of
Yops secreted into the culture medium and Yops in intact bacteria .
Samples of the cleared supernatant that contained only Yops secreted
into the culture medium were obtained to assess protein secretion
levels . All protein fractions were separated by SDS-PAGE and then
subjected to immunoblotting . Specific proteins were detected on the
membrane support by using rabbit polyclonal antisera raised against
YopH, YopB, LcrV, YopD, and YopE .
Cultivation and infection of HeLa cells. Cultivation and
infection of HeLa cells for cytotoxicity assays were performed by
using standard methods (22) . The infection period
was 5 h long, and at 1- h intervals the extent of morphological
change was visualized by light microscopy . The degrees of HeLa cell
cytotoxicity induced by Yersinia strains expressing mutant
yopD derivatives were recorded by using a sliding scale . The
cytotoxicity induced by wild-type Y . pseudotuberculosis (YPIII/pIB102)
defined the upper limit, while the cytotoxicity induced by the
yopD
null mutant (YPIII/pIB621) defined the lower limit .
Ras modification assay. Y . pseudotuberculosis strains
expressing ExoS from the high-copy-number vector pTS103-Gm were
tested for the ability to induce ExoS-mediated modification of
eukaryotic Ras in infected HeLa cells (59) .
Modification of Ras was visualized by Western blotting with
Immobilon-P membranes (Millipore, Bedford, Mass.) coupled to the use
of an ECL+plus Western blot detection system (Amersham Biosciences)
and an anti-Ras monoclonal antibody (Transduction Laboratories,
Lexington, Ky.) .
Contact hemolysis of sheep erythrocytes. The contact
hemolysis assay in the presence or absence of the carbohydrates
raffinose, dextrin 15, and dextran 4 was performed as previously
described (10, 26, 33) .
Generation and elemental characterization of sequential yopD
mutants of Y . pseudotuberculosis. By using sequential deletional
mutagenesis it has recently been demonstrated that YopD has two
separate LcrH-binding sites, one at positions 53 to 149 and one at
positions 278 to 292 (Fig . 1) (20) .
To further investigate the presence of discrete YopD functional
domains, these internal deletions were introduced in cis by
allelic exchange onto the virulence plasmid of Y .
pseudotuberculosis wild-type strain YPIII/pIB102 (Fig . 1) .
We first examined the stability of the new mutants using an assay
that detected their susceptibility to endogenous proteases (20) .
Significantly, the wild-type and mutant proteins remained resistant
to proteolysis (data not shown) . We interpreted this to indicate
that the native structure of the YopD variants was preserved .
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FIG . 1 . Schematic diagram of the 306-amino-acid YopD protein of
pathogenic Yersinia spp . The structural features of YopD include
the putative transmembrane domain (TM) predicted by using the TMPRED web
server (http://www.ch.embnet.org/software/TMPRED_form.html) .
Two amphipathic
-helices,
one located internally (AD1) and the other a biologically relevant
domain at the C terminus (AD2) (22, 62),
were both identified by helical wheel projection (Antheprot, version
3.2; G . Deleage, Lyon, France) . A predicted coiled coil region (CC) was
identified by using the COILS web server (http://www.ch.embnet.org/software/COILS_form.html) .
A question mark indicates a domain that was predicted only when
low-stringency parameters were used . Also shown are the locations of the
following in-frame sequential
YopD
deletions used in this study:
1,
YPIII/pIB625 ( 4-20
aa [deletion of amino acids 4 to 20]);
2,
YPIII/pIB605 ( 23-47
aa);
3,
YPIII/pIB626 ( 53-68
aa);
4,
YPIII/pIB627 ( 73-90
aa);
5,
YPIII/pIB628 ( 95-117
aa);
6,
YPIII/pIB623 ( 128-149
aa);
7,
YPIII/pIB629 ( 150-170
aa);
8,
YPIII/pIB630 ( 174-198
aa);
9,
YPIII/pIB631 ( 207-227
aa);
10,
YPIII/pIB632 ( 234-254
aa);
11,
YPIII/pIB633 ( 256-275
aa);
12,
YPIII/pIB622 ( 278-292
aa); and
13,
YPIII/pIB624 ( 293-305
aa) . The regulatory status of individual mutants, as determined by MOX
analysis (5, 23) (see Materials and
Methods), is indicated . CD reflects wild-type regulatory control of Yop
synthesis, and TS reflects defective regulatory control in which Yop
synthesis is constitutive . YopD domains important for regulatory control
(indicated by a solid line) correspond to identical domains required for
binding the dedicated chaperone LcrH (20,
21).
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A
yopD
null mutant lacked yop regulatory control that permitted
constitutive Yop synthesis at 37°C, even during growth in
noninductive media, and it was concomitantly growth restricted at
elevated temperatures irrespective of the Ca2+ level (TS
phenotype) (5, 22, 65) .
This phenotype is distinct from the growth phenotype of wild-type
Y . pseudotuberculosis, which requires Ca2+ for growth
at 37°C (CD phenotype) and exhibits a normal pattern of Yop synthesis
(5, 22, 65) . We used a
MOX test (5, 23) to analyze the
regulatory status of each YopD deletion strain . As expected, a CD
phenotype was obtained with Y . pseudotuberculosis wild-type
strain YPIII/pIB102 (data not shown) . Furthermore, YopD deletion
mutants
1,
2,
7
to
11,
and
13
had an equivalent CD phenotype (Fig . 1) . On the
other hand, YopD deletion mutants
3
to
6
and
12,
which lacked essential domains required for LcrH binding (20),
had a TS phenotype, being unable to form colonies at 37°C; this is
comparable to the growth restriction observed for a
yopD
null mutant (Fig . 1) . In parallel, we confirmed by
immunoblotting that the TS mutants were also derepressed for Yop
synthesis (data not shown) . Taken together, these findings show that
YopD-dependent yop regulatory control requires a YopD-LcrH
complex, which is consistent with previous reports (2,
9, 21) .
We next investigated the secretion efficiency of each YopD variant
and the effect on secretion of other essential type III substrates .
Secreted proteins from cleared culture supernatants of bacteria grown
both in the absence of Ca2+ (brain heart infusion [BHI]
broth supplemented with 5 mM EGTA and 20 mM MgCl2 [inductive
conditions]) and in the presence of Ca2+ (BHI broth
supplemented with 2.5 mM CaCl2 [repressive conditions])
were analyzed . We observed efficient YopD secretion from mutants
5
to
13
and impaired YopD secretion from mutants
3
and
4
during growth in secretion-competent medium (without Ca2+)
(Fig . 2) . On the other hand, secretion by mutants
1
and
2,
although adequately expressed (data not shown), was not detected
under these assay conditions (Fig . 2) . This
observation showed that the N-terminal 47 residues are important for
efficient YopD secretion . Significantly, other type III substrates
(translocators [YopB and LcrV] and effectors [YopE and YopH]) were
generally secreted at normal wild-type levels (Fig . 2),
although more secretion was typically observed for YopD mutants
lacking yop regulatory control (null mutant and mutants
3
to
6
and
12) .
In addition, the same mutants specifically secreted LcrV in
noninducing media (with Ca2+) (Fig . 2), a
phenomenon reported previously for mutants with mutations in both
YopD (65) and its cognate chaperone, LcrH (21,
56) .
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FIG . 2 . Analysis of Yop secretion from Y . pseudotuberculosis
strains grown in BHI broth either with (+) or without (–) Ca2+ .
Secreted Yops (a mixture of Yops present only in cleared culture
supernatants) were separated by SDS-PAGE and identified by immunoblot
analysis by using polyclonal rabbit anti-YopH, anti-YopB, anti-LcrV,
anti-YopD, and anti-YopE antisera . The asterisk indicates a nonspecific
cross-reactive band detected by using anti-YopB antiserum . The molecular
masses indicated in parentheses were deduced from the primary sequences.
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Identification of discrete YopD domains essential for Yop effector
translocation. Having defined the secretion effects imposed by the
various yopD mutations, we tried to identify discrete
translocation domains . A yopD null mutant does not translocate
the YopE Rho-GAP cytotoxin or the YopH tyrosine phosphatase into
infected HeLa cell monolayers (22) . To investigate
if a particular region of YopD was involved in the translocation, we
initially used the YopE-dependent HeLa cell cytotoxicity assay (48)
to determine translocation competency . As expected, nonsecreted YopD
mutants
1
and
2
and the yopD null mutant did not translocate YopE, as the
cellular morphology of infected monolayers was indistinguishable from
that of uninfected cell monolayers (Fig . 3, compare panels
C and D with panel A) . Similarly, YopD mutants
3
to
6
and
10
to
13
also did not induce YopE-dependent cytotoxicity towards HeLa cells
(Fig . 3E to H and L to O) . In fact, only YopD mutants
7
to
9
were indistinguishable from the wild type in terms of being able to
efficiently translocate YopE into target cells (Fig . 3,
compare panels I to K with panel B) .
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FIG . 3 . Infection of HeLa cells by Y . pseudotuberculosis . Strains
were allowed to infect a monolayer of growing HeLa cells, and at 2 h
postinfection the effect of the bacteria on the HeLa cells was
determined by phase-contrast microscopy . Note the extensive rounding of
the YopE-dependent cytotoxically affected HeLa cells (B and I to K) .
HeLa cells infected with strains carrying a yopD null mutation or
the in-frame
1
to
6
and
10
to
13
YopD deletions had normal uninfected cell morphology (compare panel A
with panels C to H and L to P) . Prolonged infections (up to 5 h) did not
alter the experimental outcome (data not shown).
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In parallel, we introduced the Pseudomonas aeruginosa ExoS effector
molecule (pTS103-Gm) (10) into the Yersinia
yopE
null mutant (YPIII/pIB522) (19) that also
contained a variant of YopD ( 1
to
13) .
Because there is an ADP-ribosylating domain that relies on the
eukaryotic 14-3-3 protein family (4, 31),
ExoS-dependent ADP ribosylation of cytoplasmic proteins, such as Ras,
provides a sensitive method for detecting direct translocation of
ExoS into target cells (10, 31,
59, 60) . A YopE defective background
was chosen to avoid an inhibitory effect on pore formation (63)
that may have had an impact on the ExoS translocation efficiency .
We confirmed that ExoS encoded on plasmid pTS103-Gm was efficiently
secreted from all strains, except when it was combined with the
1,
2,
and
13
in-frame deletions of YopD (Fig . 4A) . At least for
the
1
and
2
backgrounds, this phenomenon was also observed for Yop secretion
(Fig . 2) . The ExoS-producing strains were then used
to infect HeLa cell monolayers . Cytoplasmic Ras in infected HeLa cell
lysates was fractionated by SDS-PAGE and immunoblotted with
monoclonal anti-Ras antibodies . ExoS-dependent ADP ribosylation of
Ras is easily observed as a more slowly migrating band after
fractionation (10, 31, 59,
60) . Similar to their inability to translocate
YopE, YopD deletion mutants
1
to
6
and
10
to
13
did not translocate ExoS, as Ras remained unmodified even after 135
min of infection, similar to the results obtained for the uninfected
control (Fig . 4B and data not shown) .
Significantly, strains harboring the wild-type YopD ( yopE)
and the
7
to
9
variants were all able to translocate ExoS, yet distinct differences
in translocation efficiency were detected . Interestingly, the
8
mutant translocated ExoS at a higher rate than the parental strain,
as judged by the more rapid disappearance of unmodified Ras . On the
other hand, the rate of translocation by the
7
mutant was notably lower, while the rate of translocation by the
9
mutant was intermediate, despite the fact that both organisms
were able to rapidly induce YopE-dependent cytotoxicity (Fig .
3 and 4) . This further established the
utility of the ExoS reporter system as an important tool in
establishing the efficiency of effector translocation .
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FIG . 4 . (A) Analysis of secreted ExoS produced in trans by a
yopE
null mutant (YPIII/pIB522) of Y . pseudotuberculosis harboring
sequential deletions of YopD and grown under inducing conditions
(without Ca2+) . Secreted protein from cleared bacterial
supernatants was separated by SDS-PAGE and identified by immunoblot
analysis by using polyclonal rabbit anti-ExoS antisera . ExoS, together
with its dedicated chaperone Orf1, is encoded on the high-copy-number
plasmid pTS103-Gm (pExoS+) under control of the native
promoter (10) . (B) Ras modification in HeLa cells
infected with bacteria expressing ExoS . HeLa cells were harvested after
infection at 45 and 90 min and dissolved in sample buffer . Proteins in
the HeLa cell lysates were fractionated by SDS-PAGE, and this was
followed by immunoblotting with anti-Ras monoclonal antibody . As a
loading control, the same filters were also probed with a monoclonal
antibody directed against the eukaryotic cytosolic marker protein Erk .
One asterisk indicates the position of unmodified Ras, while two
asterisks indicate the position of the more slowly migrating modified
version of Ras . No further Ras modification was observed at later times
(data not shown).
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The data described above highlight regions of YopD (regions in
7
to
9,
encompassing residues 150 to 227) that are dispensable for
translocation . Furthermore, in the secreted YopD mutants, residues 53
to 149 (in
3
to
6)
and the C terminus extending from residue 234 (in
10
to
13)
are required for Yop effector translocation . Despite this
translocation defect, the mutants with deletions encompassing
residues 234 to 275 ( 10
and
11)
and the extreme C terminus from residue 293 ( 13)
all exhibit normal yop regulatory control . This finding
revealed novel YopD domains that are involved solely in effector
translocation .
Examination of the intrabacterial stability of YopD.
Identification of YopD mutants
10,
11,
and
13,
which are defective only in translocation, was an important finding .
Therefore, we examined the stability of these three mutants to ensure
that the phenotypic readout was not due to the in-frame deletions
imparting a conformation biased toward one experimental assay
over another . We used an intrabacterial stability assay (18)
as a means to quantitate the native folding propensity of these
mutants . We did not detect any significant differences in the
susceptibilities of the wild-type and mutant proteins to endogenous
proteases over a 60-min period (Fig . 5A) . This was true for
either the
8
mutant, which was phenotypically indistinguishable from the wild
type, or mutants
10,
11,
and
13,
which exhibited a defect in Yop effector translocation but not in
regulation . This was reflected by the similar half-lives (range, 24
to 33 min) of all the variants tested (Fig . 5B) .
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FIG . 5 . Conformational analysis of YopD internal deletion mutants . (A
and B) Intrabacterial stability of YopD proteins produced by Y .
pseudotuberculosis grown at 37°C in the presence of 5 mM CaCl2 .
At time zero, chloramphenicol was added in order to stop new protein
synthesis . Aliquots were taken at different times, and the amounts of
proteins were determined by Western blot analysis (A) and by a
densitometry analysis in which images were first acquired with a Fluor-S
MultiImager (Bio-Rad) and after inversion the intensity of each band was
quantified by using the Quantity One quantitation software (version
4.2.3; Bio-Rad) (B) . (C and D) Immunoblots of secreted YopD prepared
from cleared culture supernatants that had been incubated with (+) or
without (–) chymotrypsin for 30 min prior to trichloroacetic acid
precipitation . YopD was identified by using polyclonal rabbit anti-YopD
antiserum ( -YopD)
in combination with enhanced chemiluminescence detection prior to normal
exposure (A and C) and overexposure (D) to X-ray film . For reference,
the asterisk identifies identical bands in panels C and D.
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We also used chymotrypsin digestion of secreted YopD to further probe
for structural differences between the wild-type and mutant proteins .
Notable differences in protein digestion patterns would have been
indicative of altered protein folds . Chymotrypsin was used because it
was predicted to target about five recognition sites in YopD with a
cleavage probability of
80%,
as determined with the PeptideCutter web server (http://us.expasy.org/tools/peptidecutter)
(data not shown), which resulted in an even distribution of
peptide fragments in the size range from approximately 8 to 32 kDa .
Significantly, YopD variants secreted from Yersinia all
exhibited very similar peptide fragmentation patterns in the
suggested size range (Fig . 5C and D) . Small deviations likely
occurred because each in-frame deletion was predicted to remove
at least one chymotrypsin recognition site .
Taken together, these results supported the conclusion that the
YopD variants encoded by the
10,
11,
and
13
mutant alleles had comparable tertiary structures . This conclusion
was also supported by the ability of the mutants to still bind LcrH (20),
a prerequisite for yop regulatory control (21) .
We interpreted this to indicate that the loss of Yop effector
translocation, but not the loss of yop regulatory control, in
these YopD mutant backgrounds is a bona fide phenotype .
Contact hemolysis as a prelude to Yop effector translocation.
A number of studies have implicated YopD in a tripartite complex with
the other translocator proteins LcrV and YopB, which forms pores in
the eukaryotic membrane through which Yop effectors are translocated
(10, 32, 41,
61) . Therefore, we wanted to investigate whether
the participation of YopD in pore formation always ensures functional
Yop translocation . Workers in our laboratories routinely use
hemoglobin release from erythrocytes infected with Yersinia as
a measure of pore formation in eukaryotic membranes (10,
26, 32, 33) . All
the yopD deletion alleles were introduced into the
yopK
null mutant (YPIII/pIB155) (34), since this background
enhances the assay sensitivity (10, 26,
32) . As anticipated, YopD mutants
7,
8,
and
9
were able to lyse erythrocytes (Fig . 6A), which
paralleled the capacity of the mutants to translocate antihost
effectors into target cells (Fig . 3 and 4) .
Indeed, lysis by the
8
mutant was comparable to lysis by the parental YPIII/pIB155 strain
producing wild-type YopD . On the other hand, not only were mutants
4,
5,
and
10
to
13
unable to translocate Yop effectors, they were also not capable of
lysing erythrocyte membranes, which is comparable to the results
obtained for the control strain harboring a full-length deletion of
yopD (Fig . 6A) . Surprisingly, however, lysis
was still observed for mutants
1
to
3
and
6
(Fig . 6A), even though these mutants displayed no
evidence of effector translocation (Fig . 3 and 4) .
It is noteworthy that the degree of lysis was no different than the
degree of lysis that we observed for mutants
7
and
9,
which could translocate YopE and ExoS .
|
FIG . 6 . Lysis of erythrocytes by a
yopK
null mutant (YPIII/pIB155) of Y . pseudotuberculosis also having a
sequential in-frame deletion of YopD (A) in combination with the site
mutation I288K located in the C-terminal amphipathic
-helix
(B) or with a defective type III secretion apparatus ( yscU
lcrQ)
(C) . Sheep erythrocytes were infected with the different strains of
Y . pseudotuberculosis for 3 h . After this the amount of released
hemoglobin was determined spectrophotometrically . The values are the
average lytic activities ± standard deviations (as determined with
Microsoft Excel 2000) for at least four individual experiments performed
in quadruplicate.
|
|
To confirm that the observed lytic activities of wild-type Y .
pseudotuberculosis and isogenic YopD mutants
1
to
3
and
6
to
9
were actually due to the ordered membrane insertion of YopD-dependent
pores having similar dimensions, we performed an osmoprotection
assay . Osmoprotectants of suitable sizes can prevent osmotic lysis of
erythrocytes (10, 32) . After infection of
sheep erythrocytes, the largest carbohydrate, dextran 4 (diameter, 3
to 3.5 nm), and the medium-size carbohydrate, dextrin 15 (diameter,
2.2 nm), dramatically inhibited this activity in a manner that was
typically size dependent (Fig . 7) . Moreover, the
smallest carbohydrate, raffinose (diameter, 1.2 to 1.4 nm), generally
poorly prevented hemoglobin release except with mutant
9,
in which there was a >50% reduction in hemolysis . Nevertheless, the
overall pattern of osmoprotection observed for the specific YopD
mutants was comparable to the wild-type pattern, which clearly
demonstrated that the lytic activity was due to the specific
formation of YopD-dependent pores that were of similar sizes in
erythrocyte membranes and not due to nonspecific membrane disruption .
Significantly, this assay also confirmed that the
3
and
6
mutant proteins were able to form pores that resembled those formed
by wild-type YopD yet were not sufficient for effector
microinjection . Hence, YopD-dependent pore formation does not
guarantee functional translocation . This strongly supports the
hypothesis that there is a multistep process during translocation and
that pore formation is only one discrete part of this process . Thus,
YopD appears to play an important role in more than one step of the
translocation process .
|
FIG . 7 . Osmoprotection of infected erythrocytes by different
carbohydrates . Sheep erythrocytes were infected with the different
strains of Y . pseudotuberculosis for 3 h in the presence of
carbohydrates having different diameters, including raffinose (diameter,
1.2 to 1.4 nm), dextrin 15 (diameter, 2.2 nm), and dextran 4 (diameter,
3 to 3.5 nm), after which the amounts of released hemoglobin were
determined spectrophotometrically . The lytic activity is expressed as a
percentage of the lysis in the absence of sugars . The bars and error
bars indicate the means and standard errors of the means (as calculated
by using Mathsoft Axum software, version 7.0), respectively, for three
independent experiments.
|
|
Even though the mutant
1
and
2
proteins were apparently not secreted at detectable levels (Fig.
2), it is intriguing that they could form pores
with sizes similar to the size of wild-type pores in erythrocyte
membranes (Fig . 7) . Therefore, to further examine
this finding, into these YopD variants we introduced a second-site
mutation (I288K) in the C-terminal amphipathic
-helix
that is known to eliminate pore formation (Olsson and Francis,
unpublished data) . Significantly, the double YopD mutants were no
longer able to form pores in erythrocyte membranes (Fig .
6B), which reinforces the idea that the pore-forming ability
of the
1
and
2
mutant proteins is dependent on secreted forms of YopD 4-20
and YopD 23-47,
respectively . Since this suggests that these variants are actually
secreted, albeit at very low levels, we sought to clarify this issue .
The YscU inner membrane protein is essential for type III secretion (37) .
Therefore, we introduced a
yscU
deletion into
1
and
2
mutants that also contained a
yopK
deletion . However, as a loss-of-function mutation in the TTSS
represses Yop synthesis (14), we restored Yop synthesis
by introducing a deletion into the LcrQ repressor element (45,
47, 57) . The new mutants were
compared to their isogenic parents for the ability to secrete YopD
and the ability to form pores in erythrocyte membranes . Clearly, the
yopK
1
and
yopK
2
mutants could indeed secrete minor amounts of YopD 4-20
and YopD 23-47,
respectively, but the secretion was visualized only after fivefold
more protein was fractionated by SDS-PAGE (compared to the amounts
in experiments whose results are shown in Fig . 2) and
after overexposure of the ECL-detected membrane to X-ray film (Fig .
8) . This secretion was type III dependent because the
quadruple mutants (having deletions in yopK, yscU,
lcrQ, and yopD) did not secrete detectable levels of
either YopD variant (Fig . 8) . Moreover, these
nonsecreting mutants were not able to induce pore formation in our
hemoglobin release assay (Fig . 6C) . Thus, like
mutants
3
and
6,
mutants
1
and
2
could generate pores, but they were unable to establish effector
microinjection . The failure of these two mutants to translocate
effectors may not have been due simply to low secretion levels, since
we observed several LcrH mutants that exhibited comparably poor
levels of YopD secretion yet still translocated effectors into
infected cell monolayers with the efficiency of the wild-type strain
(Edqvist and Francis, unpublished) . Hence, the collective data
give credence to the hypothesis that there is multistep involvement
of YopD in this complex virulence strategy and that there are
discrete functional domains in YopD .
|
FIG . 8 . Analysis of YopD synthesis and secretion from Y .
pseudotuberculosis strains grown in BHI broth without Ca2+ .
YopD in the total fractions (mixtures of proteins in intact bacteria
secreted into the culture medium) (A) and YopD in the secreted fractions
(mixtures of trichloroacetic acid-precipitated proteins in cleared
culture supernatants) (B) were separated by SDS-PAGE and identified by
immunoblot analysis by using polyclonal rabbit anti-YopD antiserum ( -YopD).
|
|
Several studies have pointed to involvement of YopD at multiple
levels during type III secretion by Yersinia . Until now, it
has been difficult to determine whether the collective findings are a
true reflection of the role of YopD during an infection . Therefore,
we performed comprehensive phenotypic mapping of sequential in-frame
YopD deletion mutants of the plasmid-encoded TTSS of Y .
pseudotuberculosis . Discrete functional domains were identified
that were necessary to facilitate YopD secretion, LcrH chaperone
binding, yop regulation, effector translocation, and pore
formation (Table 3) . In particular, YopD mutants that
could separate pore formation in eukaryotic membranes from microinjection
of antihost effectors into target host cells were isolated .
Importantly, this suggested that these two events could be separated .
It is noteworthy that the different functions observed for YopD
encompass nearly every step of the process leading to type III-mediated
translocation of Yop effectors into target cells . In view of
this, it is not surprising that independent studies may result in
different conclusions with respect to the function of YopD .
Presumably, this would also be the case for other type III proteins
from different bacterial pathogens . Despite this, our results clearly
show that YopD is truly a multifunctional protein that has a mosaic
of discrete domains which have individual functions .
| TABLE 3 . Summary of the relevant phenotypes of each Y .
pseudotuberculosis yopD allele variant
|
|
In bacterial pathogens of animals, members of the TTSS translocon
family often have multiple functions involving regulatory, structural,
and effector mechanisms . This is particularly true for IpaB and
IpaC of Shigella spp . (16, 43),
SipB and SipC of Salmonella enterica serovar Typhimurium (16),
EspB and EspD of enteropathogenic and enterohemorrhagic E . coli
(16), and YopD and LcrV of Yersinia spp . (3,
13, 14; this study) . This level of
complexity presents obstacles to studying the individual functions of
these important proteins . Therefore, the fact that we isolated three
YopD mutants,
10
(YopD 234-254),
11
(YopD 256-275),
and
13
(YopD 293-305),which
are specifically defective in pore formation and translocation
of antihost effectors into target cells but not yop regulatory
control and chaperone binding, is important .
Not surprisingly, deletion of the putative coiled coil domain
encompassing residues 248 to 277 (44) eliminated effector
translocation . As this domain is intimately involved in
protein-protein interactions (38) and is
widespread in proteins of TTSSs (16, 44),
this mutant phenotype supports the notion that the Yersinia
translocon is a multiprotein complex that presumably includes YopD,
YopB, and LcrV . However, the observed interactions of YopD with
either LcrV (52) or YopB (29,
42) are not known to specifically involve the YopD
coiled coil domain . Another consideration is that the coiled coil
domain may initiate YopD multimerization (39,
62), which might be a requirement for biological function, as was
recently proposed for PopD, a YopD homologue encoded by the
TTSS of P . aeruginosa (54) . To investigate the
translocon complex, one approach which we have used is a comparative
analysis of the functional complementation of translocon components
from Y . pseudotuberculosis and P . aeruginosa (8-10) .
This analysis revealed that YopD and PopD, despite their
similarities, were not functionally interchangeable, indicating that
only interactions with native translocon members support effector
translocation (8) . We are currently pursuing this
line of investigation with the view that the coiled coil domain may
indeed confer specificity within YopD toward its binding partners .
This is particularly significant since a corresponding coiled coil
domain in PopD was not predicted (8) .
The translocon proteins are thought to generate a pore complex in
the eukaryotic membrane through which antihost effectors pass en
route to the inside of infected cells (15, 36) .
A paradoxical finding, however, is that several of the pore
components may partially localize to the target cell cytosol,
resulting in an intracellular effector function (6,
16) . In this regard, YopD was observed inside
infected HeLa cells, but no obvious effector function was identified
(22) . Perhaps translocating YopD might be
necessary to maintain effector molecules in a translocation-competent
state during microinjection . Indeed, the fact that YopD interacts
with the YopE cytotoxin in vitro (29) may well be
a consequence of this putative chaperone role in vivo . In this study,
we identified four YopD mutants,
1
(YopD 4-20),
2
(YopD 23-47),
3
(YopD 53-68),
and
6
(YopD 128-149),
that did not translocate effector proteins (YopE and ExoS), even
though the pore formation in erythrocyte membranes was equivalent to
that induced by mutants
7
(YopD 150-170)
and
9
(YopD 207-227),
which could efficiently translocate effectors . This was a surprising
finding and supported the hypothesis that pore formation is not
sufficient for effector microinjection . The data for these mutants
indicate that there is an additional function of YopD in the
translocation process that extends beyond pore formation .
Interestingly, deletion of the region encompassing residues 128 to
149, which formed pores without mediating effector translocation ( 6),
corresponded to a putative hydrophobic domain (25) that
is required for YopE binding (29) . Taken together,
these data indirectly support the hypothesis that YopD has a guidance
role during translocation, and they may also have implications for
the intracellular role of translocon components from other animal
pathogens . In this context, the observation that mutant
8
(YopD 174-198)
has an enhanced rate of ExoS translocation compared to that of
wild-type Yersinia, while it exhibits an equivalent degree of
lytic activity, is also very significant . Indeed, this supports our
notion that pore formation in target cell plasma membranes and
effector microinjection are separate events and that discrete domains
of YopD are dedicated to each activity .
It is also interesting that the poorly secreting mutants
1
(YopD 4-20)
and
2
(YopD 23-47)
could still induce pore formation but not effector translocation .
This was not due to low levels of secreted YopD, since very low
levels of secreted YopD and YopB translocator proteins were all that
was necessary for a subset of LcrH mutants to efficiently translocate
Yop effectors (Edqvist and Francis, unpublished) . Importantly, it
appears that as little as the first three N-terminal amino acids are
sufficient for low-level YopD secretion . To our knowledge, this is
the first study that has defined the secretion domain of a
translocator protein . However, a precedent for a requirement for so
few N-terminal amino acids in type III-dependent protein secretion
has been established . An analysis of the type III secretion signal of
the S . enterica InvJ protein, which is required to control the
needle length of the type III needle complex, revealed that
residues 4 to 7 were predominantly required to ensure efficient
secretion of InvJ (50) . Whether these miniature secretion
signals are universal for the type III substrates presumably secreted
early during an infection, such as determinants of the outer
needle and the translocators, remains a fascinating challenge for
further studies .
The regulatory loops that control expression of the Yersinia
plasmid-borne TTSS are innately complex (14,
58) . One essential negative regulatory network was
illustrated by the finding that mutants with mutations in the LcrH
chaperone that are unable to bind YopD do not have yop
regulatory control (21) . We confirmed this
observation by showing that YopD mutants that are unable to bind LcrH
also are not able to control yop regulation . In this context,
the finding that an LcrH-YopD complex, in association with LcrQ, is
necessary for repressing translation of mRNA derived from type III
genes is a key observation (2, 11) .
However, since LcrQ does not interact with YopD or LcrH (67),
the exact mechanism of this regulatory cross talk remains unresolved .
In summary, we report the results of a thorough phenotypic analysis
of in-frame sequential deletions of YopD . Our results confirmed
that a YopD-LcrH interaction is necessary to maintain yop regulatory
control . In addition, we established that pore formation is
only one step in the process of effector translocation into target
cells . Furthermore, we isolated YopD mutants that are
indistinguishable from the wild type with respect to yop regulatory
control but are unable to induce pores in eukaryotic membranes
and to microinject antihost effectors . We concluded that YopD does
function in several steps leading to efficient effector translocation
by virtue of mutant phenotypes identified in (i) regulation, (ii)
secretion, (iii) pore formation, and (iv) translocation . Our results
should facilitate analysis of the molecular mechanisms that govern
the multistep process of effector translocation by TTSSs in numerous
bacterial pathogens . This may even preempt the discovery of a common
antibacterial therapy targeted toward this highly refined and
effective virulence strategy .
This work was supported by grants from the Swedish Research Council
(to Å.F., H.W.W., and M.S.F.), the Foundation for Medical Research at
Umeå University (to M.S.F.), the Swedish Foundation for Strategic
Research (to Å.F . and H.W.W.), and the J . C . Kempes Memorial Fund (to
J.O., P.J.E., and J.E.B.) .
We are indebted to Maria Vedin and Stefan Lindström for skillful
technical assistance, and we thank Victoria Shingler for advice
concerning the chymotrypsin digestion assay .
* Corresponding author . Mailing address: Department of
Molecular Biology, Umeå University, SE-901 87 Umeå, Sweden . Phone:
46-(0)90-7852536 . Fax: 46-(0)90-771420 . E-mail: matthew.francis@molbiol.umu.se.
J.O., P.J.E., and J.E.B . contributed equally to this work .
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