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Journal of Bacteriology, September 2004, p . 6159-6167, Vol .
186, No . 18
Characterization of Heme Uptake Cluster Genes in the Fish Pathogen Vibrio
anguillarum
Susana Mouriño, Carlos R . Osorio, and Manuel L . Lemos*
Department of Microbiology and Parasitology, Institute of Aquaculture and
Faculty of Biology, University of Santiago de Compostela, Santiago de
Compostela, Spain
Received 25 May 2004/ Accepted 25 June 2004
Vibrio anguillarum can utilize hemin and hemoglobin as sole
iron sources . In previous work we identified HuvA, the V . anguillarum
outer membrane heme receptor by complementation of a heme utilization
mutant with a cosmid clone [pML1] isolated from a genomic library
of V . anguillarum . In the present study, we describe a gene
cluster contained in cosmid pML1, coding for nine potential
heme uptake and utilization proteins: HuvA, the heme receptor;HuvZ
and HuvX; TonB, ExbB, and ExbD; HuvB, the putative periplasmic
binding protein; HuvC, the putative inner membrane permease;and
HuvD, the putative ABC transporter ATPase . A V . anguillarum
strain with an in-frame chromosomal deletion of the nine-genecluster
was impaired for growth with heme or hemoglobin as thesole iron
source . Single-gene in-frame deletions were constructed,
demonstrating that each of the huvAZBCD genes are essential
for utilization of heme as an iron source in V . anguillarum,
whereas huvX is not . When expressed in Escherichia coli hemA
[strain EB53], a plasmid carrying the gene for the heme receptor,
HuvA, was sufficient to allow the use of heme as the porphyrin
source . For utilization of heme as an iron source in E . colient
[strain 101ESD], the tonB exbBD and huvBCD genes were required
in addition to huvA . The V . anguillarum heme uptake cluster
shows some differences in gene arrangement when compared to
homologous clusters described for other Vibrio species.
Iron is an essential element for most bacteria, serving as acofactor
in key metabolic processes such as nucleotide biosynthesis,electron
transfer, and energy transduction . Most bacterial pathogensrequire
iron for growth and to establish an infection, and thusthey have
developed efficient mechanisms to obtain iron fromthe host [32] .
The small amounts of extracellular iron are quicklybound by
high-affinity carrier proteins such as transferrinin serum and
lactoferrin in secretions . Vibrio anguillarum isthe
etiological agent of a septicemic disease known as vibriosis,which
affects a large number of marine fish species . Withinthe 10 O
serogroups described by Sørensen and Larsen[35],
only serotypes O1 and O2 and, to a lesser extent, serotypeO3 are
considered important fish pathogens . Although V . anguillarum
is the best known fish pathogen of the genus Vibrio, the nature
of its virulence mechanisms is not thoroughly understood . Strains
of pathogenic V . anguillarum serotypes can acquire iron by the
production and secretion of siderophores [2,
4, 16, 19,
38].Heme and some heme-containing proteins,
including hemoglobinand hemoglobin-haptoglobin, can also be used as
iron sourcesby a siderophore-independent mechanism [23,
24].
In this way, many gram-negative pathogens have the ability to
obtain iron through utilization of free heme or heme proteinsfrom
the host tissues [7, 18], and heme
utilization genes havebeen identified in numerous species, including
Yersinia enterocolitica[36,
37], Vibrio cholerae [13, 26,
29], Escherichia coli O157[39],
Vibrio vulnificus [20], Plesiomonas shigelloides
[14],and Shigella dysenteriae [28]
among others . Specific receptorsare involved in heme binding and
transport . Receptor-mediateduptake of heme includes translocation of
the ligands into theperiplasm by an energy-dependent process that
requires a functionalTonB system [30,
36] . The TonB protein, which is anchored inthe
cytoplasmic membrane and associated with two accessory proteins,ExbB
and ExbD, spans the periplasm and interacts with the ligand-loaded
receptor . The TonB-ExbBD system is believed to be involved in
transducing the energy of the proton motive force of the cytoplasmic
membrane into transport energy required by the receptor . The
pernicious oxidative effects of free heme dictate the presenceof a
periplasmic binding protein to transport heme across theperiplasmic
compartment . Transport of heme or iron across thecytoplasmic
membrane is driven by ATP hydrolysis, and an ATP-bindingcassette
[ABC] transporter is commonly involved in transportthrough the
cytoplasmic membrane [17].
In previous studies we identified HuvA, the outer membrane receptor
involved in heme uptake in V . anguillarum . The huvA gene was
isolated from a V . anguillarum H-775-3 cosmid library by its
ability to restore heme utilization in 101ESD, an E . coli mutant
strain that fails to grow under iron-limiting conditions and
cannot use heme as an iron source [25] . A TonB-ExbB-ExbD
systemhas also been recently found in V . anguillarum . It was
observedthat a tonB mutant strain was still able to take up
heme, suggestingthat V . anguillarum may harbor two TonB
systems [M . Stork, M.Di Lorenzo, S . Mouriño, C . R . Osorio, M . L .
Lemos, andJ . H . Crosa, unpublished data].
The goal of the present study was to identify and characterizethe
genes involved in heme transport in V . anguillarum . Sequences
of the heme uptake cluster genes were determined and analyzed,and
deletion mutants were constructed and tested for the abilityto grow
with hemin or hemoglobin as the sole iron source . Complementationof
E . coli mutants with V . anguillarum genes for restoration
of heme utilization as an iron and porphyrin source was also
evaluated.
Plasmids, bacteria, and media. Plasmids and bacterial strains
used in this study are listedin Table 1 . V .
anguillarum cells were routinely grown at 25°Cin tryptic soy
agar [Difco] supplemented with 1% NaCl [TSA-1],as well as in M9
minimal medium [27] supplemented with 0.2%
Casamino Acids [Difco] [CM9] . E . coli strains were grown at
37°C in Luria-Bertani [LB] broth, LB agar, or CM9 supplementedwith
antibiotics when appropriate . Strain EB53 aroB hemA andits
derivatives were routinely grown in LB medium supplementedwith 2 µg
of 5-aminolevulinic acid [ALA; Sigma] ml–1.All strains
were stored frozen at –80°C in LB brothwith 20% glycerol .
Antibiotics were used at the following finalconcentrations:
tetracycline hydrochloride at 15 µg ml–1,kanamycin at 25
µg ml–1, and ampicillin sodium saltat 50 µg ml–1 .
2,2'-Dipyridyl [Sigma], used to chelatenonheme iron, was prepared at
10 mM in ultrapure water [milli-Q;Millipore] . Bovine hemin [Sigma]
was dissolved at 5 mM in 10mM NaOH . Bovine hemoglobin [Sigma] was
dissolved at 1 mM inultrapure water.
| TABLE 1 . Bacterial strains and plasmids used in this study
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Recombinant DNA techniques. Recombinant DNA methods including
restriction-enzyme digestions,ligation reactions, agarose gel
electrophoresis, and plasmidanalysis were performed following
standard protocols [34] . ChromosomalDNA was
isolated by using the Easy-DNA kit [Invitrogen] . Plasmidpurification
and elution of DNA fragments from agarose gelswere performed with
kits from QIAGEN . Southern blot analyseswere performed with
Hybond-N+ membranes [Amersham Biosciences],using the ECL Direct
Nucleic Acid Labeling and Detection system[Amersham Biosciences],
following the manufacturer's instructions.E . coli strains
were transformed by a standard calcium chloridemethod [34] .
Triparental mating for transfer of cosmid pML1into E . coli
EB53 was performed as described previously [8].
E . coli strain HB101 harboring the helper plasmid pRK2013 was
used as a mobilizing strain [5].
DNA sequencing and data analysis. DNA sequences were
determined by the dideoxy-chain terminationmethod by using the Big
Dye Terminator v3.0 DNA sequencing kit[Applied Biosystems] on an
automated sequencer, ABI 377 [AppliedBiosystems] . Restriction maps
were generated and DNA translationwas performed with the BioEdit
Sequence Alignment Editor [11].Homologies of the
deduced amino acid sequences were determinedby consulting the EMBL
and SWALL databases, using the FASTA3and BLAST algorithms, at the
European Bioinformatics Institutewebsite.
Construction of chromosomal mutations. Gene deletions in
V . anguillarum H-775-3 were constructed byusing PCR
amplifications of two fragments of each gene, whichwhen ligated
together would result in an in-frame [nonpolar]deletion .
Amplification was carried out using the Expand HighFidelity PCR
system [Roche] . The oligonucleotides used to amplifythe carboxy- and
amino-terminal fragments of each gene are listedin Table
2 . Construction of an in-frame huvAZXBCD tonB exbBD
mutant was accomplished by ligating the PCR products obtained
with primer pairs HuvA.A-HuvA.B and HuvD.C2-HuvD.D . Allelicexchange
was carried out using the suicide vector pNidKan . PlasmidpKEK229 [3]
was cut with PstI, and a kanamycin resistance cassette[Genblock;
Pharmacia] was inserted, producing pNidKan . As apCVD442 derivative,
pNidKan contains R6K ori, requiring thepir gene
product for replication, and the sacB gene, conferringsucrose
sensitivity . Construction of in-frame deletions of huvX,
huvZ, huvC, huvD, huvB, huvA and deletion of the
complete genecluster occurred in several steps . The PCR-amplified
carboxy-terminalgene fragments were ligated into pWKS30, and
resulting plasmidswere cut with appropriate enzymes and ligated to
the amino-terminalPCR fragments of each corresponding gene . This
process resultedin the formation of mutant alleles
huvZ
[removes coding sequencesfor amino acids 76 to 126],
huvX
[removes coding sequences foramino acids 90 to 144],
huvC
[removes coding sequences for aminoacids 19 to 291],
huvB
[removes coding sequences for amino acids18 to 259],
huvD
[removes coding sequences for amino acids 183to 345], and
huvA
[removes coding sequences for amino acids178 to 698] and the
complete gene cluster deletion mutant
huv
[removes coding sequences encompassing amino acid 178 encoded
by huvA and amino acid 345 encoded by huvD] . Each deleted allele
cloned in pWKS30 was digested with NotI and SalI and ligated
into the NotI/SalI sites of the suicide vector pNidKan . Theresulting
plasmids were mated from E . coli S17-1- pir
into V.anguillarum H-775-3, and transformants with the
plasmid integratedinto the chromosome by homologous recombination
were selectedon agar medium containing kanamycin and ampicillin . A
secondrecombination event was obtained by selecting for sucrose
resistance[10% wt/vol] and resistance to the specific antibiotic for
therecipient strain [ampicillin] . This led to obtention of V .
anguillarum
huvZ,
huvX,
huvC,
huvB,
huvD,
huvA,
and
huv
mutant strains.Southern blot hybridization analysis was used to
verify allelicexchange of the parental gene . In addition, for each
mutantstrain, the region involved in the deletion construction was
PCR amplified and sequenced to ensure that the constructs were
nonpolar [data not shown].
| TABLE 2 . Oligonucleotides used in this study
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Subcloning of pML1 and construction of plasmids carrying V .
anguillarum genes. Oligonucleotides used to amplify genes of the
V . anguillarumheme uptake system are listed in Table
2 . Cosmid pML1 was cutwith ApaLI, and two
fragments were subcloned in pACYC177, yieldingpCAR121 [containing
huvA] and pCAR126 [containing huvX, tonB-exbBD,
huvB, and partial huvZC genes] . An EcoRV fragment containing
complete huvZX genes was cloned in pWKS30 to yield pSML11 . A
SacI-HindIII fragment including complete tonB-exbBD genes was
cloned in pWKS30 to yield pSML34.
The complete nine-gene heme uptake cluster was PCR amplifiedwith
primers huvA-5' and HuvC.D . The PCR product was cut withEcoRI and
cloned in pWKS30 to produce pSML23 . A PstI-EcoRI fragmentof pSML23
containing huvBCD genes, and a SacI-ApaI fragment,including
the tonB system plus huvBCD genes, were subclonedin
pWKS30 to yield pSML32 and pSML33, respectively [in caseswhere a
unique promoter exists upstream of tonB from which thesix
downstream genes are transcribed, huvBCD genes cloned in
pSML32 will not be expressed].
The complete huvA gene including upstream and downstream DNA
was amplified with primers huvA-5' and huvA-Eco-3' . The PCR
product was cut with EcoRI and cloned in pWKS30 to yield pCAR115.The
complete huvX gene including upstream DNA was amplifiedwith
primers VA-huvZ-D and VA-HutZ-1 . The PCR product was clonedin
pGEMT-Easy, and the insert was cut with EcoRI and subclonedin pWKS30
to yield pCAR181 . The complete huvZ gene includingthe
putative huvX promoter and in-frame-deleted huvX open reading
frame [ORF] was amplified from V . anguillarum
huvX
with primersPX3 and VA-TonB-4 [this allows the cloning of huvZ
independentlyof huvX while still maintaining the putative
huvX promoter,from which it is feasible that transcription of
huvZ may occur].The PCR product was cloned in pGEMT-Easy, and
the insert wascut with EcoRI and cloned in pWKS30 to yield pCAR179 .
All thePCR-amplified V . anguillarum genes to be used in
complementationassays were obtained with the Expand High Fidelity
PCR system[Roche] and further DNA sequenced to ensure that no PCR
errorswere artificially introduced.
Hemin and hemoglobin utilization assays. To test the ability
of V . anguillarum mutants to utilize heminor hemoglobin as an
iron source, overnight cultures of the parentalstrain, V .
anguillarum H-775-3, and the mutant strains wereadjusted to the
same optical density and diluted 1:100 in freshCM9 broth containing
the iron source [hemin, 10 µM; orhemoglobin, 1 µM] with or without
the iron chelator 2,2'-dipyridylat 100 µM . Cultures were shaken at
25°C, and absorbanceat 600 nm was monitored at 1-h intervals over 12
h.
Complementation experiments. To test which genes of the
cluster were essential for the utilizationof hemin and hemoglobin as
iron and porphyrin sources, E . colistrain EB53 aroB hemA
and strain 101ESD
[entC-entA]
were transformedwith several plasmids . One-hundred-microliter
portions of overnightcultures were added to 3 ml of molten soft
nutrient broth [NB]or CM9 and plated onto appropriately prepared NB,
CM9, or CM9supplemented with 100 µM 2,2'-dipyridyl plates . Sterile
filter paper disks were loaded with 20 µl of 5 and 0.05mM
hemin and 1 mM hemoglobin . Disks spotted with 20 µlof 2 mg-ml–1
ALA or 5 mM FeSO4 were included as positivecontrols for
utilization of porphyrin and iron sources, respectively.Results were
annotated as positive or negative after 24 h ofincubation.
Nucleotide sequence accession number. The EMBL accession
number for the sequence described in thisarticle is
AJ496544.
Nucleotide sequence analysis of V . anguillarum heme utilization
genes. The genetic organization of the V . anguillarum heme
utilizationgene cluster was determined by partial DNA sequence
analysisof pML1, a cosmid which enabled E . coli 101ESD to
utilize hemeas an iron source and which contains the heme receptor
gene,huvA [25] . The two strands of a DNA
region downstream of huvAspanning ca . 6,000 bp were
sequenced, and eight closely linkedORFs were identified [Fig.
1] . The predicted products displaysignificant
similarity to components of other heme uptake systemsin Vibrio
and Plesiomonas species [Table 3].
|
FIG . 1 . [A] Physical map of the heme uptake gene cluster of V .
anguillarum and mutant allele construction . ORFs are depicted as
arrows, which indicate the direction of transcription, and the vertical
numbers show the start and the end points of each gene . Deleted regions
within each gene are shown as stippled boxes . [B] Relevant plasmid
derivatives of the heme uptake cluster and restriction sites used in
subcloning procedures.
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| TABLE 3 . Proteins with homology to products of V . anguillarum huvZ,
huvX, and huvBCD genes
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A gene which we termed huvZ was found 125 bp downstream of the
huvA stop codon and is transcribed from the opposite strand.
huvZ encodes a 176-amino-acid protein with homology to proteins
linked to heme transport systems [Table 3] . The function
ofHuvZ homologues remains uncharacterized, though some observations
suggest that P . shigelloides HugZ could be involved in preventing
heme toxicity [14] . Interestingly, database comparisons
evidencethat HuvZ has homology to proteins containing a flavin
mononucleotide-bindingsplit barrel [data not shown] . This homology
suggests that thisprotein may play a role in processes of electron
transfer, withthe heme group being involved.
The next ORF in the cluster corresponds to the huvX gene, located
55 nucleotides upstream of the huvZ start codon, and codes for
a predicted protein of 171 amino acids . The highest similarities
were to proteins linked to heme transport systems of gram-negative
bacteria [Table 3] . None of the HuvX homologues has a
knownfunction, but it has been suggested that P . shigelloides
HugXcould be involved in preventing heme toxicity [14].
Six additional genes are transcribed from the same strand as
huvA . The three ORFs located adjacent to huvX encode the three
proteins TonB, ExbB, and ExbD . The remaining three ORFs located
downstream of exbD in this cluster code for proteins which show
characteristics of heme transport proteins [Table 3] .
The predictedstart codon for the seventh ORF of the cluster, huvB,
is 51nucleotides downstream from the stop codon of exbD . It
encodesa predicted 282-amino-acid protein with homology to putative
periplasmic heme-binding proteins . These proteins are believed
to be involved in the transport of heme across the periplasmfrom the
receptor to the ABC transporter located in the innermembrane.
The eighth ORF of the cluster encodes a 314-amino-acid protein
which we termed HuvC, which has homology to members of a familyof
ABC-type permease proteins involved in the uptake of iron[Table
3] . The last ORF of the cluster encoded a protein termed
HuvD, which showed homology to the ATP-binding protein component
of permeases involved in heme transport [Table 3] . The
firstputative ATG of the V . anguillarum HuvD ORF determines a
proteinof 199 amino acids, which is shorter than homologues such as
V . cholerae HutD or P . shigelloides HugD . Two TTG triplets,
which is an unusual start codon in eubacteria [9], are
locatedin frame upstream of the candidate ATG start codon and can be
considered putative start codons for V . anguillarum HuvD . The
amino acid sequence translated from any of these TTG triplets
show high similarity to the N-terminal amino acids of V . cholerae
HutD . Considering one of these two in-frame TTG triplets asthe
start codon, the larger V . anguillarum predicted HuvD ORF
encodes a protein with features common to ABC transporter ATPases:
the walkerA nucleotide-binding consensus motif GPNGAGKS [located42
bp upstream of the first ATG codon] and the walkerB motifLMLDE at
positions 103 to 107 downstream of the putative ATGstart . These two
sites are part of a highly conserved ATP-bindingmotif that
constitute an ATP-binding pocket [40] . In addition,
an ABC transporter signature motif, LSGGE, is found at positions
77 to 81 of HuvD [Fig . 2] . The presence of these
features suggeststhat V . anguillarum HuvD is the ATPase
component of the hemeABC transporter.
|
FIG . 2 . Alignment of the V . anguillarum HuvD ORF with homologues
of other Vibrio species . Predicted amino acid sequence starting
from a putative TTG start codon is shown in italics . Conserved GPNGAGKS,
LMLDE, and LSGGE domains are shown in bold . Asterisks denote amino acids
conserved in all the compared sequences.
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Similarities with other heme uptake gene clusters. The spatial
organization of heme uptake genes in the chromosomeof V .
anguillarum is similar to that described for other Vibrio
species and for P . shigelloides [Fig . 3] . This fact
suggeststhat the genes of the heme transport cluster were acquired
byhorizontal gene transfer, simultaneously with the TonB genes.
This may have represented a selective advantage, allowing efficient
heme transport by the recipient strain . However, some differences
in gene order are observed . Among the Vibrio species, V .
anguillarumis unique in that the outer membrane receptor gene is
linkedto the rest of the heme transport genes . Similarly, upstream
of the huvX homologue, all other Vibrio species, as well as
P . shigelloides, contain a gene which is transcribed in the
same direction as huvX and huvZ homologues and is absent in
the V . anguillarum heme uptake cluster . This gene codes for
a putative coproporphyrinogen oxidase [it has been named HutW,
PhuW, or HugW], an enzyme that converts coproporphyrinogen IIIinto
protoporphyrin IX, one of the steps in the heme biosynthesispathway
[31].
|
FIG . 3 . Comparative chromosomal arrangement of heme uptake cluster genes
in Vibrio species and P . shigelloides.
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Finally, a gene [hupR] coding for a member of the LysR family
of transcriptional activators, which regulates expression ofthe heme
receptor, has been found in V . vulnificus [21] .
Homologuesof this gene are encountered upstream of V .
parahaemolyticushutA [22] and V . cholerae
hutA [12] . However, the nucleotidesequence
immediately upstream of V . anguillarum huvA does notcode for
an HupR homologue [data not shown].
Phenotypic analysis of heme uptake system chromosomal mutants with
hemin or hemoglobin as the only iron source. In order to evaluate the
importance of individual genes of theheme uptake system in the
utilization of hemin or hemoglobin,individual in-frame deletions of
huvA, huvZ, huvX, huvB, huvC,and huvD
and an in-frame deletion of the complete nine-genecluster were
constructed . The H-775-3 strain, deficient in siderophoreanguibactin
biosynthesis, was chosen in order to eliminate backgroundgrowth
resulting from anguibactin-mediated iron uptake in iron-restricted
media . Growth assays were carried out in triplicate, and results
shown here are the means of three independent experiments . Strains
were first assayed in an iron-sufficient medium with hemin [10µM] .
No significant differences in growth rates were seenin
iron-sufficient medium between mutant strains and V . anguillarum
H-775-3 [Fig . 4A] . The same mutants were then grown in
an iron-restrictedmedium with the iron chelator 2,2'-dipyridyl added
at a concentrationof 100 µM and containing 10 µM hemin as the sole
iron source . Under these conditions, no significant differences
in growth were observed between the
huvX
strain and the parentalstrain, V . anguillarum H-775-3, with
the slight differencesobserved likely due to a lower initial
inoculum . This demonstratesthat this gene is not essential for the
utilization of heminas the sole iron source in V . anguillarum .
By contrast, therest of the assayed mutants were drastically
affected in theirability to use hemin . Mutation of any huvAZBCD
gene decreasedbacterial growth to minimal levels [Fig .
4B] . The
huv
strainshowed a reduction in growth with hemin as the sole iron
sourcecomparable to that observed in the single
huvA,
-Z, -B, -C,and -D mutants [Fig.
4B] . The same results were obtained forall the
assayed strains when hemoglobin was used as the ironsource instead
of hemin [data not shown].
|
FIG . 4 . Growth of V . anguillarum H-775-3 [ ]
and
huvA
[ ],
huvZ
[ ],
huvX
[ ],
huvB
[ ],
huvC
[•],
huvD
[+], and
huv
[*] mutants in CM9 minimal medium . Growth was with hemin [10 µM] as the
iron source without [A] and with [B] the free-iron chelator
2,2'-dipyridyl [100 µM] . Results are expressed as the averages of three
independent experiments . OD600, optical density at 600 nm.
|
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Utilization of heme compounds by E . coli EB53 and 101ESD
complemented with V . anguillarum genes. The ability of V .
anguillarum heme transport genes to allowthe use of hemin or
hemoglobin as porphyrin and iron sourceswas evaluated in E . coli
EB53 [aroB hemA] and in E . coli 101ESD [ [entC-entA]],
respectively . The aroB and entC-entA mutationsrender
E . coli unable to produce its own siderophore, enterochelin,
and the hemA mutation disrupts synthesis of heme . Therefore,
E . coli EB53 cannot grow unless supplied with the heme biosynthetic
precursor ALA . EB53 could satisfy the porphyrin deficiency by
utilizing exogenously supplied hemin, as long as a genetic systemfor
hemin uptake is provided . Similarly, 101ESD cannot growin the
presence of iron chelators unless supplied with a utilizablesource
of iron.
Growth around hemin [0.05 and 5 mM] or hemoglobin [1 mM] diskson
nutrient agar plates [NB] was used to assay the use of porphyrin
sources by E . coli EB53 . To test whether the introduction of
the entire heme transport gene cluster would promote hemin and
hemoglobin utilization as porphyrin sources, cosmid pML1, containing
the entire heme transport region within a ca . 15-kb V . anguillarum
H-775-3 genome fragment, was introduced into EB53 by triparental
mating . This transformant utilized hemin and hemoglobin as porphyrin
sources . A subclone of pML1 [pCAR121] containing only huvA proved
to be sufficient to confer the utilization of hemin and hemoglobin
as porphyrin sources upon E . coli EB53 . This indicates that
E . coli EB53 [a K-12 derivative] encodes all the additional
functions necessary for transporting and utilizing heme as a
porphyrin when an outer membrane heme receptor is provided.None of
other plasmid combinations assayed, in which huvA wasabsent,
could complement EB53 [data not shown].
To determine which genes are necessary for the utilization of
hemin and hemoglobin as iron sources, E . coli 101ESD was complemented
with V . anguillarum genes and tested on CM9 minimal medium plates
supplemented with 100 µM 2,2'-dipyridyl and with heminand
hemoglobin supplied on paper disks . Results are summarizedin Table
4 . E . coli 101ESD transformed with plasmids containing
huvA alone did not grow in this medium, indicating that other
genes in addition to huvA are needed for the utilization of
hemin or hemoglobin as an iron source . However, E . coli 101ESD
transformed with cosmid pML1 utilized both compounds as iron
sources . In order to determine the minimum genetic background
necessary for utilization of heme as an iron source, differentgene
combinations were assayed.
| TABLE 4 . Utilization of hemin and hemoglobin as iron sources by E .
coli 101ESD complemented with V . anguillarum heme uptake
genesa
|
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Heme iron utilization did not occur when strain 101ESD/pCAR121was
transformed with pSML11 [huvZX] or with pCAR126 [huvX tonB
exbBD huvB] . The complete nine-gene cluster was PCR amplified,
cloned in pWKS30 to yield pSML23, and transformed into 101ESD.This
strain utilized hemin and hemoglobin as iron sources, indicatingthat
this capacity is encoded within the nine-gene cluster describedhere
and that this utilization is not due to extra genes presentin pML1.
Complete tonB exbBD huvBCD genes cloned in pSML33 and transformed
into strain 101ESD/pCAR121 allowed this strain to utilize hemin
and hemoglobin as iron sources . However, 101ESD/pCAR121/pSML32and
101ESD/pCAR121/pSML34 failed to grow with hemin or hemoglobin.These
results together demonstrate that tonB exbBD genes in
combination with huvA are not sufficient for heme iron utilization
unless huvBCD genes are also provided . It is feasible that
huvBCDgenes are the crucial ones in combination with huvA
to allowtransport of heme compounds into the cytoplasm of E . coli
andfurther utilization as iron sources . The finding that tonB
exbBDgenes need to be provided in the same plasmid together with
downstream huvBCD genes in order to allow complementation may
be explained by the existence of a single promoter upstreamof
tonB, as has been reported for V . cholerae [29].
Utilization of hemin and heme-containing proteins as iron sourceshas
been reported for V . anguillarum [23,
24], but the molecularmechanism supporting heme uptake is
unknown . In a recent work,the V . anguillarum outer membrane
heme receptor gene huvA wascharacterized, and a huvA
mutant obtained by chemical mutagenesisshowed a reduction in
virulence for fish [25] . In the presentstudy, we
characterized a gene cluster in V . anguillarum thathas
similarities with heme iron assimilation systems found inother
Vibrio species and P . shigelloides, both at the aminoacid
level and gene organization.
Homologues of V . anguillarum HuvZX proteins have been described,
associated with the heme utilization systems of V . cholerae,
V . vulnificus, Vibrio parahaemolyticus, and P .
shigelloides,but to date their roles remain unascertained . In
the presentstudy we report the mutational analysis of V .
anguillarum huvZXgenes . Our results have shown that a huvX
deletion mutant isable to use heme nearly as efficiently as the
parental strain.This suggests that either huvX is not
directly involved in theuse of heme as an iron source or additional
V . anguillarum genesmay substitute for the function of
huvX . However, deletion ofhuvZ drastically reduces the
ability of the bacterium to growwith heme as the sole iron source,
indicating that this geneis essential for heme iron utilization . A
HuvZ-related activitymay be present in E . coli 101ESD, since
the heme uptake systemof V . anguillarum can be easily
reconstituted in 101ESD withoutHuvZ . However, the actual function of
HuvZ remains unknown.A possibility would be that HuvZ is involved in
removing ironfrom heme . It has been proposed that the oxidative
cleavageof heme mediated by heme oxygenases is a mechanism for iron
acquisition for some bacteria . Heme oxygenase genes have been
described recently for Neisseria meningitidis [44],
and Corynebacteriumdiphtheriae [42], but
no significant homology exists betweenthese described heme oxygenase
genes and HuvZ . Recently, Wyckoffet al . [43]
demonstrated that hutZ [homologous to huvZ] is also
essential for heme iron utilization in V . cholerae . These authors
could not demonstrate a heme oxygenase activity for HutZ, suggesting
that it may act as a heme carrier or storage protein . Further
studies are needed in order to ascertain the role played byHuvZ in
the utilization of heme as an iron source.
V . anguillarum huvBCD genes are essential for heme uptake . Nonpolar
deletions in any of these three genes drastically reduce the
growth of V . anguillarum with hemin or hemoglobin as the sole
iron source . In contrast, it has been reported that V . cholerae
hutB, hutC, or hutD mutants still retain significant growth
when hemin is used as the only iron source [29] . Thus,
it ispossible that proteins of other transport systems of V .
choleraecan substitute for the physiological role of either
HutB, -C,or -D, while in V . anguillarum each one of these
proteins isessential for heme uptake.
Complementation studies carried out with E . coli EB53 showed
that the V . anguillarum outer membrane heme receptor HuvA is
sufficient for utilization of heme compounds as porphyrin sources.
Complementation of E . coli heme-deficient mutants with an outer
membrane heme receptor provided in trans has been previously
reported [36] . Interestingly, the P . shigelloides
heme receptorgene hugA could not complement an E . coli
DHE-1 hemA mutantfor the use of heme as a porphyrin source
unless P . shigelloidestonB-exbB-exbD genes were also provided
in trans [14].
In the use of heme compounds as an iron source, huvA plus tonB
exbBD huvBCD are needed to reconstitute the V . anguillarum heme
transport system in E . coli 101ESD [an HB101 derivative] .
Similarly,Occhino et al . [29] reported that
utilization of hemin as aniron source can be reconstituted in E .
coli 1017 [HB101 derivative,ent] with V . cholerae hutA,
tonB exbBD, and hutBCD genes . Incontrast, Henderson et
al . [14] observed that a plasmid containing
hugWXZ was necessary in addition to hugA and tonB-exbBD to
reconstitutethe P . shigelloides heme iron utilization system
in E . coli1017.
We hypothesize that the V . anguillarum huvBCD genes are crucial
for heme iron utilization in E . coli 101ESD but the tonB and
exbBD genes are not . Complementation of EB53 for heme utilization
as a porphyrin source did not depend on the presence of the
V . anguillarum TonB system in trans, which means that huvA
aloneis active in an E . coli background . We propose that
hutBCD genesare transcribed from a promoter located upstream of
the tonBgene, and thus actual complementation for heme iron
utilizationis achieved only when the six genes tonB, exbBD,
and huvBCD,are provided together on a plasmid . It remains to
be explainedwhy heme utilization as a porphyrin source in E . coli
EB53 doesnot depend on huvBCD genes while utilization as an
iron sourcein E . coli 101ESD does require huvBCD . This
could be due toa difference in strain background, as for example,
the presenceof an inner membrane transporter in EB53.
As reported by Stojiljkovic and Hantke [36], the Y .
enterocoliticaouter membrane heme receptor HemR alone is
sufficient to complementE . coli for utilization of heme as a
porphyrin source, and itis possible that hemin, once in the
periplasm, can be incorporatedinto cytochromes located in the
cytoplasmic membrane [10] . However,utilization of
heme compounds as iron sources would be feasibleonly as long as the
heme compound is transported from the periplasmicspace into the
cytoplasm, where it is expected that additionalproteins are
implicated in degradation of the heme moleculeand in the release of
iron . As proposed by Stojiljkovic andHantke [36],
the difference between porphyrin and iron utilizationfrom heme may
be merely quantitative, being the amount of hemeneeded to satisfy
the cell's requirements for iron, much largerthan the amount
necessary as a porphyrin source . This beingthe case, E . coli
EB53 complemented with V . anguillarum HuvAcould transport
trace amounts of heme as a porphyrin sourceinto the cytoplasm via
nonspecific E . coli ABC transporters.However, heme iron
utilization could be effective only as longas a specific ABC
transporter [HuvBCD] is provided.
The gene coding for the V . anguillarum outer membrane heme receptor
is linked to the rest of heme transport genes . Such a spatial
organization is unusual in other species of the family Vibrionaceae,
where the outer membrane receptor gene is separated from the
rest of the transport genes by hundreds of kilobases [1,
12,22] . Other differences in
the V . anguillarum heme uptake clusterinclude the absence of
a putative coproporphyrinogen oxidasegene and a gene for a LysR
transcriptional activator homologue,which are present in V .
vulnificus, V . cholerae, and V . parahaemolyticus[1,
12, 22] . It is possible that the heme
transport clusteroriginally included homologues of these genes,
which eventuallyunderwent a spatial reorganization in the genome of
V . anguillarum.
In conclusion, we have shown in this study that the heme uptake
cluster of V . anguillarum H-775-3 includes nine genes, fiveof
which proved to be essential for utilization of heme as aniron
source . The gene arrangement of the V . anguillarum hemeuptake
cluster has unique features which differentiate it fromhomologous
clusters found in other gram-negative bacteria.
We gratefully acknowledge J . H . Crosa, K . E . Klose, and V . Braunfor
providing strains and plasmids.
This work was supported by grants AGL2000-0492 and AGL-2003-00086
from the Ministry of Science and Technology of Spain [cofundedby the
FEDER Programme from the European Union] and grant PGIDT01PXI26202PN
from Xunta de Galicia to M.L.L.
* Corresponding author . Mailing address: Department of
Microbiology and Parasitology, Institute of Aquaculture and Faculty of Biology,
University of Santiago de Compostela, Santiago de Compostela 15782, Spain .
Phone: 34-981563100, ext . 16080 . Fax: 34-981547165 . E-mail: mlemos@usc.es .
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